Wall clock time and date at job start Sun Mar 29 2020 22:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42910 * 110.36593 * 2 1 4 4 C 1.54257 * 110.32776 * 122.17775 * 2 1 3 5 5 C 1.54381 * 105.14978 * 118.84533 * 4 2 1 6 6 N 1.48833 * 104.46643 * 23.88131 * 5 4 2 7 7 C 1.46897 * 110.97300 * 200.94630 * 6 5 4 8 8 C 1.53002 * 109.47030 * 285.42204 * 7 6 5 9 9 H 1.08994 * 109.47483 * 55.00078 * 8 7 6 10 10 C 1.47200 * 109.46734 * 294.99632 * 8 7 6 11 11 N 5.70560 * 157.71706 * 230.34736 * 2 1 3 12 12 C 1.53001 * 109.46637 * 175.00056 * 8 7 6 13 13 C 1.50702 * 109.46868 * 184.99652 * 12 8 7 14 14 H 1.08002 * 119.99959 * 0.02562 * 13 12 8 15 15 C 1.37881 * 120.00215 * 180.02562 * 13 12 8 16 16 N 1.31513 * 120.00113 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99585 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47390 * 90.00436 * 17 15 13 19 19 H 1.48509 * 109.46930 * 209.99927 * 17 15 13 20 20 H 1.48499 * 109.47680 * 330.00061 * 17 15 13 21 21 C 1.48564 * 104.23345 * 320.50078 * 6 5 4 22 22 H 1.08999 * 109.46787 * 299.27112 * 1 2 3 23 23 H 1.08998 * 109.47221 * 59.27474 * 1 2 3 24 24 H 1.08996 * 109.46887 * 179.27531 * 1 2 3 25 25 H 0.96699 * 114.00154 * 60.72701 * 3 2 1 26 26 H 1.09002 * 110.32715 * 237.79589 * 4 2 1 27 27 H 1.08998 * 110.32251 * 359.90115 * 4 2 1 28 28 H 1.09000 * 110.41095 * 142.68340 * 5 4 2 29 29 H 1.08999 * 110.41612 * 265.13091 * 5 4 2 30 30 H 1.09000 * 109.46943 * 45.41718 * 7 6 5 31 31 H 1.08998 * 109.46919 * 165.41895 * 7 6 5 32 32 H 1.08997 * 109.47627 * 304.99489 * 12 8 7 33 33 H 1.09001 * 109.46964 * 65.00123 * 12 8 7 34 34 H 0.96998 * 120.00194 * 179.97438 * 16 15 13 35 35 H 1.09001 * 110.40797 * 280.72597 * 21 6 5 36 36 H 1.09005 * 110.40897 * 158.28739 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0274 1.3398 0.0000 4 6 2.0659 -0.7703 1.2243 5 6 2.8802 -1.9436 0.6380 6 7 3.2695 -1.4828 -0.7226 7 6 3.6070 -2.6216 -1.5869 8 6 4.9773 -3.1745 -1.1900 9 1 4.9763 -3.4202 -0.1281 10 6 6.0114 -2.1620 -1.4585 11 7 6.8095 -1.3806 -1.6657 12 6 5.2739 -4.4351 -2.0048 13 6 6.5655 -5.0484 -1.5287 14 1 7.1192 -4.5857 -0.7251 15 6 7.0405 -6.2004 -2.1191 16 7 8.1674 -6.7359 -1.7034 17 14 6.0826 -7.0010 -3.5086 18 1 6.5367 -6.4441 -4.8082 19 1 6.3161 -8.4675 -3.4899 20 1 4.6335 -6.7282 -3.3324 21 6 2.0662 -0.7709 -1.2253 22 1 -0.3633 0.5025 0.8965 23 1 -0.3633 0.5250 -0.8834 24 1 -0.3633 -1.0276 -0.0130 25 1 1.7593 1.8588 0.7706 26 1 2.7082 -0.1266 1.8253 27 1 1.2389 -1.1470 1.8262 28 1 3.7657 -2.1324 1.2449 29 1 2.2636 -2.8401 0.5745 30 1 2.8536 -3.4008 -1.4718 31 1 3.6346 -2.2934 -2.6259 32 1 4.4623 -5.1510 -1.8752 33 1 5.3629 -4.1735 -3.0592 34 1 8.5014 -7.5465 -2.1184 35 1 1.3230 -1.4848 -1.5803 36 1 2.3394 -0.0778 -2.0210 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177071733.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:40 Heat of formation + Delta-G solvation = -54.486209 kcal Electronic energy + Delta-G solvation = -16949.556008 eV Core-core repulsion = 14239.283530 eV Total energy + Delta-G solvation = -2710.272479 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60349 -38.42447 -36.74869 -35.48263 -34.04903 -32.18999 -30.48076 -29.05314 -26.57839 -24.49575 -23.28394 -22.10769 -21.20537 -18.90967 -18.29814 -17.75740 -16.86242 -16.14924 -16.03332 -15.59124 -15.20268 -14.90258 -14.53727 -14.38923 -14.30743 -13.89431 -13.63607 -13.40322 -13.17100 -13.03021 -12.77188 -12.75406 -12.43336 -12.27216 -11.96373 -11.75328 -11.72916 -11.67867 -11.41762 -11.21834 -10.83483 -10.73520 -9.35058 -8.24441 -6.30408 1.43569 1.44969 1.55920 2.03298 2.11304 2.41412 2.99078 3.12067 3.28486 3.32410 3.66421 3.76822 4.08693 4.12214 4.30208 4.37118 4.50767 4.63447 4.64241 4.74701 4.78309 4.83751 4.87638 4.97116 5.08735 5.09518 5.22497 5.23588 5.32327 5.43153 5.63096 5.94814 6.05604 6.27153 6.76827 6.89293 6.97228 7.33976 8.92679 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038883 B = 0.005356 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.934005 B = 5226.337330 C = 5485.549684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.123 3.877 3 O -0.576 6.576 4 C -0.145 4.145 5 C 0.025 3.975 6 N -0.537 5.537 7 C 0.058 3.942 8 C 0.029 3.971 9 H 0.111 0.889 10 C 0.262 3.738 11 N -0.518 5.518 12 C -0.002 4.002 13 C -0.532 4.532 14 H 0.026 0.974 15 C 0.003 3.997 16 N -0.955 5.955 17 Si 0.949 3.051 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.221 1.221 21 C 0.042 3.958 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.389 0.611 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.080 0.920 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.703 9.175 4.085 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.082 3.918 3 O -0.384 6.384 4 C -0.183 4.183 5 C -0.102 4.102 6 N -0.261 5.261 7 C -0.072 4.072 8 C 0.007 3.993 9 H 0.129 0.871 10 C -0.054 4.054 11 N -0.196 5.196 12 C -0.041 4.041 13 C -0.570 4.570 14 H 0.045 0.955 15 C -0.193 4.193 16 N -0.595 5.595 17 Si 0.772 3.228 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.143 1.143 21 C -0.085 4.085 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.238 0.762 26 H 0.089 0.911 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.660 10.372 3.205 23.338 hybrid contribution -0.314 -1.120 0.107 1.168 sum -20.974 9.252 3.312 23.162 Atomic orbital electron populations 1.22394 0.92927 1.03707 1.03253 1.21984 0.93358 0.82229 0.94264 1.86595 1.77716 1.24359 1.49764 1.23078 1.00277 0.97354 0.97638 1.23281 0.99337 0.97553 0.90061 1.65398 1.34233 1.23328 1.03129 1.22323 0.93986 0.93027 0.97835 1.19025 0.88158 0.88957 1.03122 0.87147 1.29490 0.92834 0.91983 0.91063 1.80982 1.12674 1.14543 1.11391 1.19601 0.96551 0.92396 0.95569 1.21393 1.07233 1.09439 1.18931 0.95527 1.26052 0.95760 0.97642 0.99894 1.70090 1.22995 1.21979 1.44478 0.85687 0.81671 0.77020 0.78457 1.20314 1.21457 1.14341 1.23119 0.91466 0.96905 0.97035 0.90598 0.91981 0.90287 0.76199 0.91085 0.88220 0.91029 0.91214 0.89380 0.90077 0.91496 0.95623 0.92634 0.90159 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.58 71.98 0.62 -1.21 16 2 C 0.12 2.12 1.44 -9.90 -0.01 2.11 16 3 O -0.58 -12.01 12.96 -148.98 -1.93 -13.94 16 4 C -0.15 -2.38 6.44 31.49 0.20 -2.18 16 5 C 0.03 0.52 5.92 86.40 0.51 1.03 16 6 N -0.54 -13.75 5.04 -880.73 -4.44 -18.19 16 7 C 0.06 1.50 4.19 86.30 0.36 1.86 16 8 C 0.03 1.03 2.26 -12.60 -0.03 1.00 16 9 H 0.11 3.76 7.28 -2.39 -0.02 3.75 16 10 C 0.26 11.44 13.67 89.44 1.22 12.66 16 11 N -0.52 -25.24 18.54 20.01 0.37 -24.87 16 12 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 13 C -0.53 -29.16 9.15 25.60 0.23 -28.93 16 14 H 0.03 1.66 7.84 -2.91 -0.02 1.63 16 15 C 0.00 0.18 5.47 84.66 0.46 0.64 16 16 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 17 Si 0.95 41.55 27.47 68.60 1.88 43.43 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.22 -8.14 6.54 99.48 0.65 -7.49 16 21 C 0.04 0.89 5.74 86.45 0.50 1.39 16 22 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.08 0.72 8.12 -2.39 -0.02 0.70 16 25 H 0.39 4.70 9.09 -74.06 -0.67 4.03 16 26 H 0.07 1.28 7.98 -2.39 -0.02 1.26 16 27 H 0.10 1.10 7.71 -2.39 -0.02 1.09 16 28 H 0.07 1.68 7.74 -2.39 -0.02 1.66 16 29 H 0.07 1.17 7.76 -2.39 -0.02 1.15 16 30 H 0.09 1.76 7.77 -2.39 -0.02 1.74 16 31 H 0.08 2.10 8.08 -2.39 -0.02 2.08 16 32 H 0.07 2.39 7.20 -2.39 -0.02 2.38 16 33 H 0.03 1.04 7.57 -2.39 -0.02 1.02 16 34 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.08 1.30 7.70 -2.39 -0.02 1.28 16 36 H 0.07 1.73 8.08 -2.38 -0.02 1.71 16 Total: -1.00 -74.56 299.61 0.69 -73.87 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.34 Total: 10.65 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.17 Total: -11.62 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.77 Total: -102.40 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -1.93 Total: -13.94 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.88 Total: 43.43 kcal Total: -74.56 0.69 -73.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177071733.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.387 kcal (2) G-P(sol) polarization free energy of solvation -74.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds