Wall clock time and date at job start Sun Mar 29 2020 22:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47217 * 2 1 4 4 C 1.34326 * 126.44551 * 89.99974 * 3 2 1 5 5 N 1.34472 * 107.67135 * 179.76815 * 4 3 2 6 6 C 1.30260 * 108.69973 * 0.42025 * 5 4 3 7 7 C 1.50704 * 125.61847 * 179.83557 * 6 5 4 8 8 N 1.46899 * 109.46488 * 89.70006 * 7 6 5 9 9 C 1.46910 * 110.99545 * 175.53615 * 8 7 6 10 10 H 1.08996 * 109.46915 * 325.93736 * 9 8 7 11 11 C 1.50701 * 109.46955 * 205.93430 * 9 8 7 12 12 H 1.07997 * 119.99836 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99781 * 179.97438 * 11 9 8 14 14 N 1.31515 * 119.99669 * 180.02562 * 13 11 9 15 15 Si 1.86800 * 119.99881 * 0.02562 * 13 11 9 16 16 H 1.48493 * 109.46937 * 90.00027 * 15 13 11 17 17 H 1.48505 * 109.46911 * 210.00006 * 15 13 11 18 18 H 1.48495 * 109.47176 * 329.99754 * 15 13 11 19 19 C 1.53002 * 109.47206 * 85.93551 * 9 8 7 20 20 C 1.53008 * 109.46816 * 59.24433 * 19 9 8 21 21 O 1.33966 * 108.75791 * 359.57812 * 6 5 4 22 22 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46763 * 300.00232 * 1 2 3 24 24 H 1.08998 * 109.46971 * 60.00031 * 1 2 3 25 25 H 1.09007 * 109.47188 * 240.00013 * 2 1 3 26 26 H 1.09004 * 109.47392 * 120.00137 * 2 1 3 27 27 H 1.08005 * 126.16138 * 0.02562 * 4 3 2 28 28 H 1.08995 * 109.47253 * 329.70196 * 7 6 5 29 29 H 1.08999 * 109.46946 * 209.69703 * 7 6 5 30 30 H 1.00901 * 111.00739 * 51.58116 * 8 7 6 31 31 H 0.97005 * 119.99515 * 179.97438 * 14 13 11 32 32 H 1.08994 * 109.47242 * 299.24994 * 19 9 8 33 33 H 1.08991 * 109.47034 * 179.24508 * 19 9 8 34 34 H 1.09004 * 109.46691 * 175.55805 * 20 19 9 35 35 H 1.08993 * 109.47098 * 55.56268 * 20 19 9 36 36 H 1.08993 * 109.47340 * 295.55878 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2984 2.1732 1.0805 5 7 2.7277 3.3718 0.6478 6 6 2.7215 3.3722 -0.6548 7 6 3.1290 4.5264 -1.5341 8 7 4.5673 4.4400 -1.8200 9 6 4.9807 5.4894 -2.7613 10 1 4.1732 5.6830 -3.4672 11 6 6.2065 5.0364 -3.5119 12 1 6.6351 4.0659 -3.3103 13 6 6.7800 5.8606 -4.4568 14 7 7.8494 5.4651 -5.1122 15 14 6.0380 7.5390 -4.8060 16 1 6.6562 8.5494 -3.9105 17 1 6.2944 7.9088 -6.2212 18 1 4.5737 7.4929 -4.5639 19 6 5.3005 6.7706 -1.9884 20 6 6.4213 6.4940 -0.9841 21 8 2.2988 2.1756 -1.0840 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.1911 1.8687 2.1112 28 1 2.9159 5.4653 -1.0231 29 1 2.5696 4.4862 -2.4687 30 1 4.8126 3.5251 -2.1679 31 1 8.2526 6.0448 -5.7773 32 1 4.4104 7.1056 -1.4561 33 1 5.6202 7.5451 -2.6854 34 1 6.7033 7.4234 -0.4894 35 1 7.2852 6.0844 -1.5075 36 1 6.0738 5.7773 -0.2401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231648739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:11 Heat of formation + Delta-G solvation = 17.230065 kcal Electronic energy + Delta-G solvation = -16880.629950 eV Core-core repulsion = 14173.467322 eV Total energy + Delta-G solvation = -2707.162628 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.15444 -36.79250 -34.53483 -34.46406 -32.80230 -31.46074 -29.10779 -27.05123 -25.03271 -23.45592 -23.12435 -21.86073 -20.68590 -19.44184 -17.11507 -16.51558 -16.34643 -15.63861 -14.98205 -14.68912 -14.04072 -13.84679 -13.71495 -13.23856 -13.01110 -12.69920 -12.59269 -12.30031 -11.97675 -11.78940 -11.43316 -11.15700 -11.07133 -10.71230 -10.56729 -10.27550 -10.22562 -10.01718 -9.35592 -9.02195 -8.60759 -8.56144 -7.64394 -6.12868 -4.12633 1.56491 2.76235 2.87360 3.26239 3.34582 3.36748 4.22431 4.35932 4.63298 4.81845 4.95358 5.07252 5.13777 5.22457 5.27688 5.49405 5.53905 5.70903 5.76303 5.87337 6.00902 6.13714 6.18380 6.21559 6.45481 6.45726 6.67789 6.89618 7.10381 7.18368 7.48543 7.55174 7.77026 7.95617 8.17580 8.52823 8.90677 9.48413 10.99801 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040544 B = 0.005238 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.436122 B = 5344.258434 C = 5582.129200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.036 4.036 3 C -0.057 4.057 4 C -0.042 4.042 5 N -0.471 5.471 6 C 0.207 3.793 7 C 0.152 3.848 8 N -0.666 5.666 9 C 0.186 3.814 10 H 0.006 0.994 11 C -0.516 4.516 12 H 0.079 0.921 13 C 0.075 3.925 14 N -0.896 5.896 15 Si 0.887 3.113 16 H -0.276 1.276 17 H -0.297 1.297 18 H -0.268 1.268 19 C -0.114 4.114 20 C -0.126 4.126 21 O -0.201 6.201 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.178 0.822 28 H 0.107 0.893 29 H 0.052 0.948 30 H 0.344 0.656 31 H 0.265 0.735 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.021 0.979 35 H 0.067 0.933 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 -7.230 9.080 17.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 C -0.110 4.110 4 C -0.181 4.181 5 N -0.200 5.200 6 C 0.000 4.000 7 C 0.022 3.978 8 N -0.300 5.300 9 C 0.078 3.922 10 H 0.023 0.977 11 C -0.554 4.554 12 H 0.097 0.903 13 C -0.128 4.128 14 N -0.534 5.534 15 Si 0.717 3.283 16 H -0.202 1.202 17 H -0.225 1.225 18 H -0.193 1.193 19 C -0.152 4.152 20 C -0.183 4.183 21 O -0.088 6.088 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.196 0.804 28 H 0.124 0.876 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.825 -6.311 9.804 17.332 hybrid contribution -0.806 0.046 -1.368 1.588 sum -13.630 -6.265 8.436 17.210 Atomic orbital electron populations 1.21799 0.93973 1.02295 1.02668 1.20009 0.96211 0.86843 1.04294 1.23387 1.06557 0.96211 0.84866 1.23048 1.04629 0.90346 1.00058 1.70466 1.17839 1.22326 1.09379 1.26475 0.97342 0.85784 0.90425 1.20435 0.92031 0.90484 0.94866 1.60614 1.09708 1.08847 1.50791 1.19655 0.96072 0.88352 0.88106 0.97698 1.20968 1.10344 1.04625 1.19482 0.90275 1.24877 0.94509 0.98021 0.95346 1.69885 1.20697 1.37388 1.25399 0.86859 0.80185 0.85014 0.76228 1.20250 1.22508 1.19326 1.21760 0.97569 0.97922 0.97919 1.21474 0.99525 0.98808 0.98529 1.84404 1.64000 1.23834 1.36604 0.91551 0.92175 0.92307 0.89917 0.88704 0.80438 0.87552 0.92978 0.83772 0.92514 0.94845 0.93899 0.95987 0.91389 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.04 -0.32 6.49 -27.88 -0.18 -0.50 16 3 C -0.06 -0.75 6.64 -35.69 -0.24 -0.99 16 4 C -0.04 -0.59 11.80 -17.78 -0.21 -0.80 16 5 N -0.47 -8.17 11.29 -11.10 -0.13 -8.29 16 6 C 0.21 3.55 7.81 -12.94 -0.10 3.45 16 7 C 0.15 2.63 6.16 -4.97 -0.03 2.60 16 8 N -0.67 -13.54 5.61 -109.21 -0.61 -14.15 16 9 C 0.19 4.28 1.89 -68.86 -0.13 4.15 16 10 H 0.01 0.13 6.77 -51.93 -0.35 -0.22 16 11 C -0.52 -13.95 7.87 -34.44 -0.27 -14.22 16 12 H 0.08 2.33 7.85 -52.49 -0.41 1.92 16 13 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 14 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 15 Si 0.89 21.61 24.38 -169.99 -4.14 17.47 16 16 H -0.28 -6.61 6.86 56.52 0.39 -6.22 16 17 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 19 C -0.11 -2.50 5.29 -26.73 -0.14 -2.64 16 20 C -0.13 -2.70 9.52 37.16 0.35 -2.35 16 21 O -0.20 -3.26 10.78 5.37 0.06 -3.20 16 22 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.18 1.88 8.06 -52.48 -0.42 1.46 16 28 H 0.11 1.77 7.62 -51.93 -0.40 1.37 16 29 H 0.05 0.85 7.94 -51.93 -0.41 0.43 16 30 H 0.34 7.14 8.13 -39.29 -0.32 6.82 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.03 0.65 7.62 -51.93 -0.40 0.26 16 33 H 0.04 0.99 3.26 -51.93 -0.17 0.82 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 1.62 7.09 -51.93 -0.37 1.25 16 36 H 0.06 1.18 7.73 -51.93 -0.40 0.78 16 LS Contribution 294.57 15.07 4.44 4.44 Total: -1.00 -30.56 294.57 -5.66 -36.22 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.37 Total: 3.59 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.68 Total: -10.05 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.04 Total: -48.46 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.06 Total: -3.20 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.14 Total: 17.47 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.56 -5.66 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231648739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.451 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds