Wall clock time and date at job start Sun Mar 29 2020 22:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47217 * 2 1 4 4 C 1.34326 * 126.44551 * 89.99974 * 3 2 1 5 5 N 1.34472 * 107.67135 * 179.76815 * 4 3 2 6 6 C 1.30260 * 108.69973 * 0.42025 * 5 4 3 7 7 C 1.50704 * 125.61847 * 179.83557 * 6 5 4 8 8 N 1.46899 * 109.46488 * 89.70006 * 7 6 5 9 9 C 1.46910 * 110.99545 * 175.53615 * 8 7 6 10 10 H 1.08996 * 109.46915 * 325.93736 * 9 8 7 11 11 C 1.50701 * 109.46955 * 205.93430 * 9 8 7 12 12 H 1.07997 * 119.99836 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99781 * 179.97438 * 11 9 8 14 14 N 1.31515 * 119.99669 * 180.02562 * 13 11 9 15 15 Si 1.86800 * 119.99881 * 0.02562 * 13 11 9 16 16 H 1.48493 * 109.46937 * 90.00027 * 15 13 11 17 17 H 1.48505 * 109.46911 * 210.00006 * 15 13 11 18 18 H 1.48495 * 109.47176 * 329.99754 * 15 13 11 19 19 C 1.53002 * 109.47206 * 85.93551 * 9 8 7 20 20 C 1.53008 * 109.46816 * 59.24433 * 19 9 8 21 21 O 1.33966 * 108.75791 * 359.57812 * 6 5 4 22 22 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46763 * 300.00232 * 1 2 3 24 24 H 1.08998 * 109.46971 * 60.00031 * 1 2 3 25 25 H 1.09007 * 109.47188 * 240.00013 * 2 1 3 26 26 H 1.09004 * 109.47392 * 120.00137 * 2 1 3 27 27 H 1.08005 * 126.16138 * 0.02562 * 4 3 2 28 28 H 1.08995 * 109.47253 * 329.70196 * 7 6 5 29 29 H 1.08999 * 109.46946 * 209.69703 * 7 6 5 30 30 H 1.00901 * 111.00739 * 51.58116 * 8 7 6 31 31 H 0.97005 * 119.99515 * 179.97438 * 14 13 11 32 32 H 1.08994 * 109.47242 * 299.24994 * 19 9 8 33 33 H 1.08991 * 109.47034 * 179.24508 * 19 9 8 34 34 H 1.09004 * 109.46691 * 175.55805 * 20 19 9 35 35 H 1.08993 * 109.47098 * 55.56268 * 20 19 9 36 36 H 1.08993 * 109.47340 * 295.55878 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2984 2.1732 1.0805 5 7 2.7277 3.3718 0.6478 6 6 2.7215 3.3722 -0.6548 7 6 3.1290 4.5264 -1.5341 8 7 4.5673 4.4400 -1.8200 9 6 4.9807 5.4894 -2.7613 10 1 4.1732 5.6830 -3.4672 11 6 6.2065 5.0364 -3.5119 12 1 6.6351 4.0659 -3.3103 13 6 6.7800 5.8606 -4.4568 14 7 7.8494 5.4651 -5.1122 15 14 6.0380 7.5390 -4.8060 16 1 6.6562 8.5494 -3.9105 17 1 6.2944 7.9088 -6.2212 18 1 4.5737 7.4929 -4.5639 19 6 5.3005 6.7706 -1.9884 20 6 6.4213 6.4940 -0.9841 21 8 2.2988 2.1756 -1.0840 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.1911 1.8687 2.1112 28 1 2.9159 5.4653 -1.0231 29 1 2.5696 4.4862 -2.4687 30 1 4.8126 3.5251 -2.1679 31 1 8.2526 6.0448 -5.7773 32 1 4.4104 7.1056 -1.4561 33 1 5.6202 7.5451 -2.6854 34 1 6.7033 7.4234 -0.4894 35 1 7.2852 6.0844 -1.5075 36 1 6.0738 5.7773 -0.2401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231648739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:11 Heat of formation + Delta-G solvation = -6.118777 kcal Electronic energy + Delta-G solvation = -16881.642431 eV Core-core repulsion = 14173.467322 eV Total energy + Delta-G solvation = -2708.175110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.32148 -38.49475 -35.75930 -35.40802 -34.51359 -33.26909 -30.40543 -28.68193 -26.46321 -24.98184 -24.41647 -23.01045 -21.83385 -21.23878 -18.81992 -17.84042 -17.72910 -17.35333 -16.05335 -15.83054 -15.53472 -15.47695 -15.12891 -14.76614 -14.42963 -14.15071 -13.75244 -13.50325 -13.43939 -12.94970 -12.64690 -12.56785 -12.43668 -12.31647 -12.10432 -12.07639 -11.82568 -11.43173 -11.24158 -10.96988 -10.69162 -9.69140 -9.25396 -8.28992 -6.32561 0.41835 1.34219 1.36997 1.47057 1.63661 1.72087 2.32773 3.06195 3.07142 3.51733 3.76238 4.05888 4.09367 4.29193 4.31937 4.36320 4.47444 4.48166 4.60020 4.71023 4.77608 4.92599 4.95195 5.00227 5.16389 5.23084 5.29614 5.33924 5.34252 5.37118 5.62341 5.76286 5.91123 6.37286 6.53801 6.75089 6.78766 7.32356 8.87388 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040544 B = 0.005238 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.436122 B = 5344.258434 C = 5582.129200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.036 4.036 3 C -0.048 4.048 4 C -0.058 4.058 5 N -0.491 5.491 6 C 0.183 3.817 7 C 0.157 3.843 8 N -0.670 5.670 9 C 0.192 3.808 10 H 0.008 0.992 11 C -0.513 4.513 12 H 0.038 0.962 13 C 0.020 3.980 14 N -0.946 5.946 15 Si 0.944 3.056 16 H -0.266 1.266 17 H -0.300 1.300 18 H -0.245 1.245 19 C -0.116 4.116 20 C -0.118 4.118 21 O -0.216 6.216 22 H 0.090 0.910 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.123 0.877 27 H 0.210 0.790 28 H 0.116 0.884 29 H 0.063 0.937 30 H 0.337 0.663 31 H 0.266 0.734 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.033 0.967 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.464 -7.025 10.464 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C -0.102 4.102 4 C -0.196 4.196 5 N -0.221 5.221 6 C -0.024 4.024 7 C 0.027 3.973 8 N -0.302 5.302 9 C 0.083 3.917 10 H 0.025 0.975 11 C -0.551 4.551 12 H 0.057 0.943 13 C -0.178 4.178 14 N -0.586 5.586 15 Si 0.772 3.228 16 H -0.192 1.192 17 H -0.228 1.228 18 H -0.169 1.169 19 C -0.154 4.154 20 C -0.175 4.175 21 O -0.103 6.103 22 H 0.108 0.892 23 H 0.082 0.918 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.141 0.859 27 H 0.226 0.774 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.989 -6.115 11.206 19.689 hybrid contribution -0.163 -0.204 -1.708 1.728 sum -15.152 -6.319 9.498 18.966 Atomic orbital electron populations 1.21786 0.92757 1.03708 1.02101 1.20306 0.97105 0.84151 1.05810 1.24310 1.04516 0.97394 0.83936 1.23591 1.04815 0.89468 1.01757 1.70416 1.18064 1.24105 1.09543 1.26269 0.99282 0.86321 0.90487 1.20384 0.89955 0.91347 0.95603 1.60539 1.12285 1.07779 1.49630 1.19495 0.94083 0.89649 0.88510 0.97480 1.21183 1.11396 1.02940 1.19586 0.94339 1.25684 0.94846 1.01996 0.95259 1.70032 1.22712 1.39146 1.26689 0.85910 0.80672 0.80349 0.75906 1.19231 1.22794 1.16927 1.21758 0.98899 0.96797 0.97911 1.21366 0.98086 0.99857 0.98233 1.84401 1.64108 1.23910 1.37909 0.89163 0.91845 0.93785 0.89657 0.85899 0.77375 0.86612 0.91898 0.84582 0.92512 0.91776 0.94595 0.93518 0.94786 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.89 71.98 0.71 -1.10 16 2 C -0.04 -0.55 6.49 29.85 0.19 -0.35 16 3 C -0.05 -1.20 6.64 24.79 0.16 -1.04 16 4 C -0.06 -1.51 11.80 83.39 0.98 -0.53 16 5 N -0.49 -16.42 11.29 -303.82 -3.43 -19.85 16 6 C 0.18 6.13 7.81 88.34 0.69 6.82 16 7 C 0.16 5.23 6.16 85.56 0.53 5.76 16 8 N -0.67 -27.01 5.61 -499.44 -2.80 -29.81 16 9 C 0.19 8.64 1.89 44.17 0.08 8.73 16 10 H 0.01 0.34 6.77 -2.39 -0.02 0.33 16 11 C -0.51 -28.35 7.87 25.60 0.20 -28.15 16 12 H 0.04 2.38 7.85 -2.91 -0.02 2.36 16 13 C 0.02 1.14 5.45 84.66 0.46 1.60 16 14 N -0.95 -58.28 13.96 21.45 0.30 -57.98 16 15 Si 0.94 44.02 24.38 68.60 1.67 45.69 16 16 H -0.27 -11.94 6.86 99.48 0.68 -11.26 16 17 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 18 H -0.25 -10.46 6.53 99.48 0.65 -9.81 16 19 C -0.12 -4.83 5.29 30.60 0.16 -4.66 16 20 C -0.12 -4.91 9.52 71.98 0.69 -4.22 16 21 O -0.22 -6.83 10.78 -3.70 -0.04 -6.87 16 22 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.21 3.82 8.06 -2.91 -0.02 3.79 16 28 H 0.12 3.61 7.62 -2.39 -0.02 3.59 16 29 H 0.06 1.96 7.94 -2.39 -0.02 1.94 16 30 H 0.34 14.29 8.13 -89.69 -0.73 13.56 16 31 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 32 H 0.06 2.29 7.62 -2.39 -0.02 2.28 16 33 H 0.04 1.55 3.26 -2.39 -0.01 1.55 16 34 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.03 1.61 7.09 -2.39 -0.02 1.60 16 36 H 0.06 2.34 7.73 -2.39 -0.02 2.33 16 Total: -1.00 -67.06 294.57 0.82 -66.24 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.26 Total: 19.73 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 4.87 Total: -17.14 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -5.94 Total: -107.65 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.04 Total: -6.87 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.67 Total: 45.69 kcal Total: -67.06 0.82 -66.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231648739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.120 kcal (2) G-P(sol) polarization free energy of solvation -67.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds