Wall clock time and date at job start Sun Mar 29 2020 22:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47257 * 2 1 4 4 C 1.34332 * 126.44850 * 89.99517 * 3 2 1 5 5 N 1.34474 * 107.66956 * 179.77056 * 4 3 2 6 6 C 1.30260 * 108.70262 * 0.41741 * 5 4 3 7 7 C 1.50700 * 125.61793 * 179.83751 * 6 5 4 8 8 N 1.46894 * 109.46823 * 89.70147 * 7 6 5 9 9 C 1.46904 * 111.00088 * 183.08411 * 8 7 6 10 10 H 1.09006 * 109.46592 * 11.31850 * 9 8 7 11 11 C 1.50703 * 109.46909 * 131.31167 * 9 8 7 12 12 H 1.07997 * 120.00223 * 5.39424 * 11 9 8 13 13 C 1.37879 * 119.99735 * 185.39595 * 11 9 8 14 14 N 1.31509 * 120.00239 * 197.20249 * 13 11 9 15 15 Si 1.86802 * 119.99982 * 17.20424 * 13 11 9 16 16 H 1.48498 * 109.47007 * 86.80681 * 15 13 11 17 17 H 1.48499 * 109.47115 * 206.80631 * 15 13 11 18 18 H 1.48498 * 109.47269 * 326.80392 * 15 13 11 19 19 C 1.52991 * 109.47524 * 251.31543 * 9 8 7 20 20 C 1.53004 * 109.47001 * 65.64701 * 19 9 8 21 21 O 1.33963 * 108.75764 * 359.58316 * 6 5 4 22 22 H 1.09003 * 109.47020 * 60.00786 * 1 2 3 23 23 H 1.09001 * 109.47345 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47624 * 300.00428 * 1 2 3 25 25 H 1.08993 * 109.47165 * 239.99329 * 2 1 3 26 26 H 1.09005 * 109.46669 * 119.99896 * 2 1 3 27 27 H 1.07998 * 126.16105 * 0.02562 * 4 3 2 28 28 H 1.08994 * 109.47221 * 329.69976 * 7 6 5 29 29 H 1.08997 * 109.46593 * 209.70113 * 7 6 5 30 30 H 1.00905 * 111.00390 * 307.03640 * 8 7 6 31 31 H 0.96995 * 120.00731 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.46771 * 305.65028 * 19 9 8 33 33 H 1.08993 * 109.47507 * 185.65080 * 19 9 8 34 34 H 1.09005 * 109.46665 * 185.50609 * 20 19 9 35 35 H 1.08997 * 109.46981 * 65.51204 * 20 19 9 36 36 H 1.08996 * 109.47041 * 305.50811 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1732 1.0806 5 7 2.7276 3.3718 0.6477 6 6 2.7216 3.3721 -0.6549 7 6 3.1290 4.5262 -1.5342 8 7 4.5673 4.4399 -1.8201 9 6 5.0159 5.5903 -2.6159 10 1 4.2278 6.3430 -2.6425 11 6 6.2537 6.1810 -1.9914 12 1 6.7161 5.6950 -1.1450 13 6 6.7958 7.3420 -2.5006 14 7 8.0312 7.6780 -2.2000 15 14 5.7754 8.4379 -3.6174 16 1 4.9821 9.3839 -2.7922 17 1 6.6755 9.2016 -4.5184 18 1 4.8574 7.5994 -4.4294 19 6 5.3324 5.1325 -4.0410 20 6 4.0459 4.6631 -4.7234 21 8 2.2988 2.1756 -1.0841 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 2.1910 1.8688 2.1112 28 1 2.9158 5.4651 -1.0233 29 1 2.5697 4.4860 -2.4688 30 1 5.1013 4.3596 -0.9677 31 1 8.4125 8.4949 -2.5578 32 1 6.0471 4.3102 -4.0080 33 1 5.7596 5.9629 -4.6029 34 1 4.2849 4.2464 -5.7018 35 1 3.3693 5.5091 -4.8442 36 1 3.5672 3.8996 -4.1103 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231648742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:13 Heat of formation + Delta-G solvation = 11.907246 kcal Electronic energy + Delta-G solvation = -16864.411453 eV Core-core repulsion = 14157.018011 eV Total energy + Delta-G solvation = -2707.393443 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.12145 -36.72496 -34.50960 -34.43129 -32.65134 -31.62899 -29.23237 -27.40302 -25.01863 -23.48702 -22.47299 -21.71910 -20.66881 -19.69970 -17.38053 -16.50395 -16.46068 -15.34346 -14.92661 -14.72294 -14.10240 -13.90273 -13.59274 -13.21995 -12.92044 -12.70950 -12.44946 -12.27846 -11.91800 -11.68122 -11.52028 -11.41315 -11.11407 -10.82564 -10.77007 -10.40096 -10.27889 -9.84798 -9.51795 -9.23559 -8.56196 -8.44155 -7.61779 -6.17073 -4.12608 1.59596 2.79480 2.88931 3.26038 3.35351 3.37588 4.24107 4.37477 4.64299 4.83257 4.96303 5.09861 5.13703 5.24423 5.30708 5.49795 5.54348 5.73444 5.81886 5.88327 6.02160 6.06149 6.07825 6.20884 6.25413 6.47496 6.58823 6.75792 6.99853 7.01293 7.39862 7.56587 7.83716 7.95824 8.21658 8.50787 8.91324 9.48252 10.95703 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041325 B = 0.005308 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.393772 B = 5274.087574 C = 5588.079730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.035 4.035 3 C -0.058 4.058 4 C -0.041 4.041 5 N -0.484 5.484 6 C 0.212 3.788 7 C 0.149 3.851 8 N -0.675 5.675 9 C 0.193 3.807 10 H 0.012 0.988 11 C -0.541 4.541 12 H 0.077 0.923 13 C 0.081 3.919 14 N -0.886 5.886 15 Si 0.863 3.137 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.252 1.252 19 C -0.108 4.108 20 C -0.151 4.151 21 O -0.193 6.193 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.178 0.822 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.348 0.652 31 H 0.265 0.735 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.155 -12.196 1.785 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.073 4.073 3 C -0.112 4.112 4 C -0.180 4.180 5 N -0.213 5.213 6 C 0.005 3.995 7 C 0.019 3.981 8 N -0.309 5.309 9 C 0.085 3.915 10 H 0.030 0.970 11 C -0.579 4.579 12 H 0.095 0.905 13 C -0.123 4.123 14 N -0.522 5.522 15 Si 0.689 3.311 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.176 1.176 19 C -0.146 4.146 20 C -0.208 4.208 21 O -0.080 6.080 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.195 0.805 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.167 0.833 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.898 -11.951 1.518 18.392 hybrid contribution -0.542 0.831 -0.174 1.007 sum -14.441 -11.120 1.344 18.275 Atomic orbital electron populations 1.21800 0.94000 1.02261 1.02680 1.19993 0.96185 0.86867 1.04242 1.23394 1.06615 0.96245 0.84945 1.23012 1.04663 0.90246 1.00071 1.70490 1.18752 1.22629 1.09469 1.26520 0.97026 0.85937 0.90037 1.20500 0.93325 0.88481 0.95776 1.60732 0.99486 1.45814 1.24869 1.19487 0.95212 0.86208 0.90601 0.97033 1.21258 1.09988 1.09452 1.17191 0.90548 1.24885 0.94165 0.97699 0.95520 1.69991 1.12501 1.24495 1.45220 0.87194 0.81357 0.81214 0.81311 1.20478 1.21316 1.17573 1.21838 0.95883 1.00308 0.96614 1.21874 0.99400 1.00238 0.99318 1.84412 1.63691 1.23582 1.36297 0.92307 0.91584 0.92170 0.89944 0.88754 0.80461 0.91115 0.88933 0.83283 0.92531 0.92231 0.92890 0.94448 0.94391 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.04 -0.31 6.49 -27.89 -0.18 -0.49 16 3 C -0.06 -0.78 6.64 -35.69 -0.24 -1.02 16 4 C -0.04 -0.59 11.80 -17.77 -0.21 -0.80 16 5 N -0.48 -8.56 11.29 -11.10 -0.13 -8.68 16 6 C 0.21 3.70 7.82 -12.94 -0.10 3.60 16 7 C 0.15 2.64 5.72 -4.98 -0.03 2.61 16 8 N -0.68 -13.87 5.97 -109.23 -0.65 -14.53 16 9 C 0.19 4.44 1.74 -68.87 -0.12 4.32 16 10 H 0.01 0.27 6.16 -51.93 -0.32 -0.04 16 11 C -0.54 -14.83 9.00 -34.44 -0.31 -15.14 16 12 H 0.08 2.28 7.62 -52.49 -0.40 1.88 16 13 C 0.08 2.29 5.30 -17.82 -0.09 2.19 16 14 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 15 Si 0.86 20.73 25.86 -169.99 -4.40 16.33 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.25 -5.66 5.65 56.52 0.32 -5.34 16 19 C -0.11 -2.34 4.95 -26.73 -0.13 -2.48 16 20 C -0.15 -2.73 9.49 37.16 0.35 -2.37 16 21 O -0.19 -3.16 10.78 5.36 0.06 -3.10 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 29 H 0.09 1.49 6.63 -51.93 -0.34 1.15 16 30 H 0.35 7.58 7.79 -39.29 -0.31 7.28 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.05 1.20 5.17 -51.93 -0.27 0.94 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.98 6.28 -51.93 -0.33 0.66 16 LS Contribution 295.78 15.07 4.46 4.46 Total: -1.00 -30.64 295.78 -5.98 -36.62 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.41 Total: 5.04 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.69 Total: -10.34 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.00 Total: -49.01 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.06 Total: -3.10 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.40 Total: 16.33 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.64 -5.98 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231648742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.531 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds