Wall clock time and date at job start Sun Mar 29 2020 22:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47257 * 2 1 4 4 C 1.34332 * 126.44850 * 89.99517 * 3 2 1 5 5 N 1.34474 * 107.66956 * 179.77056 * 4 3 2 6 6 C 1.30260 * 108.70262 * 0.41741 * 5 4 3 7 7 C 1.50700 * 125.61793 * 179.83751 * 6 5 4 8 8 N 1.46894 * 109.46823 * 89.70147 * 7 6 5 9 9 C 1.46904 * 111.00088 * 183.08411 * 8 7 6 10 10 H 1.09006 * 109.46592 * 11.31850 * 9 8 7 11 11 C 1.50703 * 109.46909 * 131.31167 * 9 8 7 12 12 H 1.07997 * 120.00223 * 5.39424 * 11 9 8 13 13 C 1.37879 * 119.99735 * 185.39595 * 11 9 8 14 14 N 1.31509 * 120.00239 * 197.20249 * 13 11 9 15 15 Si 1.86802 * 119.99982 * 17.20424 * 13 11 9 16 16 H 1.48498 * 109.47007 * 86.80681 * 15 13 11 17 17 H 1.48499 * 109.47115 * 206.80631 * 15 13 11 18 18 H 1.48498 * 109.47269 * 326.80392 * 15 13 11 19 19 C 1.52991 * 109.47524 * 251.31543 * 9 8 7 20 20 C 1.53004 * 109.47001 * 65.64701 * 19 9 8 21 21 O 1.33963 * 108.75764 * 359.58316 * 6 5 4 22 22 H 1.09003 * 109.47020 * 60.00786 * 1 2 3 23 23 H 1.09001 * 109.47345 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47624 * 300.00428 * 1 2 3 25 25 H 1.08993 * 109.47165 * 239.99329 * 2 1 3 26 26 H 1.09005 * 109.46669 * 119.99896 * 2 1 3 27 27 H 1.07998 * 126.16105 * 0.02562 * 4 3 2 28 28 H 1.08994 * 109.47221 * 329.69976 * 7 6 5 29 29 H 1.08997 * 109.46593 * 209.70113 * 7 6 5 30 30 H 1.00905 * 111.00390 * 307.03640 * 8 7 6 31 31 H 0.96995 * 120.00731 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.46771 * 305.65028 * 19 9 8 33 33 H 1.08993 * 109.47507 * 185.65080 * 19 9 8 34 34 H 1.09005 * 109.46665 * 185.50609 * 20 19 9 35 35 H 1.08997 * 109.46981 * 65.51204 * 20 19 9 36 36 H 1.08996 * 109.47041 * 305.50811 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1732 1.0806 5 7 2.7276 3.3718 0.6477 6 6 2.7216 3.3721 -0.6549 7 6 3.1290 4.5262 -1.5342 8 7 4.5673 4.4399 -1.8201 9 6 5.0159 5.5903 -2.6159 10 1 4.2278 6.3430 -2.6425 11 6 6.2537 6.1810 -1.9914 12 1 6.7161 5.6950 -1.1450 13 6 6.7958 7.3420 -2.5006 14 7 8.0312 7.6780 -2.2000 15 14 5.7754 8.4379 -3.6174 16 1 4.9821 9.3839 -2.7922 17 1 6.6755 9.2016 -4.5184 18 1 4.8574 7.5994 -4.4294 19 6 5.3324 5.1325 -4.0410 20 6 4.0459 4.6631 -4.7234 21 8 2.2988 2.1756 -1.0841 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 2.1910 1.8688 2.1112 28 1 2.9158 5.4651 -1.0233 29 1 2.5697 4.4860 -2.4688 30 1 5.1013 4.3596 -0.9677 31 1 8.4125 8.4949 -2.5578 32 1 6.0471 4.3102 -4.0080 33 1 5.7596 5.9629 -4.6029 34 1 4.2849 4.2464 -5.7018 35 1 3.3693 5.5091 -4.8442 36 1 3.5672 3.8996 -4.1103 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231648742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:13 Heat of formation + Delta-G solvation = -11.526537 kcal Electronic energy + Delta-G solvation = -16865.427618 eV Core-core repulsion = 14157.018011 eV Total energy + Delta-G solvation = -2708.409608 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.31168 -38.41557 -35.76323 -35.34763 -34.48897 -33.29090 -30.58719 -28.93887 -26.47002 -24.51042 -24.16476 -22.87556 -21.84054 -21.45737 -19.24306 -17.88985 -17.73815 -17.00665 -16.04135 -15.92274 -15.66187 -15.28278 -14.98377 -14.75933 -14.14038 -14.02627 -13.86732 -13.54574 -13.33052 -13.08423 -12.74267 -12.60850 -12.56651 -12.34319 -12.11205 -12.03890 -11.66846 -11.45429 -11.30711 -11.16469 -10.58513 -9.70137 -9.26534 -8.34067 -6.34319 0.42732 1.36452 1.39288 1.49289 1.62887 1.72205 2.34887 3.00036 3.05016 3.58810 3.76454 4.06125 4.09942 4.32746 4.33800 4.43504 4.48829 4.56398 4.56653 4.64716 4.80124 4.88129 4.95972 5.01447 5.22727 5.24351 5.29121 5.29994 5.35332 5.40404 5.52801 5.78227 5.94050 6.32076 6.52433 6.74085 6.78274 7.30519 8.82542 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041325 B = 0.005308 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.393772 B = 5274.087574 C = 5588.079730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.035 4.035 3 C -0.046 4.046 4 C -0.061 4.061 5 N -0.509 5.509 6 C 0.188 3.812 7 C 0.154 3.846 8 N -0.675 5.675 9 C 0.199 3.801 10 H 0.020 0.980 11 C -0.548 4.548 12 H 0.033 0.967 13 C 0.025 3.975 14 N -0.937 5.937 15 Si 0.928 3.072 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.223 1.223 19 C -0.108 4.108 20 C -0.142 4.142 21 O -0.205 6.205 22 H 0.045 0.955 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.208 0.792 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.336 0.664 31 H 0.267 0.733 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.736 -13.440 0.862 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 C -0.099 4.099 4 C -0.199 4.199 5 N -0.240 5.240 6 C -0.018 4.018 7 C 0.024 3.976 8 N -0.307 5.307 9 C 0.090 3.910 10 H 0.037 0.963 11 C -0.586 4.586 12 H 0.051 0.949 13 C -0.175 4.175 14 N -0.576 5.576 15 Si 0.751 3.249 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.145 1.145 19 C -0.147 4.147 20 C -0.199 4.199 21 O -0.091 6.091 22 H 0.064 0.936 23 H 0.109 0.891 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.140 0.860 27 H 0.224 0.776 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.154 0.846 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.509 -13.222 0.586 21.160 hybrid contribution 0.281 1.067 0.254 1.133 sum -16.228 -12.155 0.839 20.293 Atomic orbital electron populations 1.21788 0.92745 1.03731 1.02106 1.20301 0.97092 0.83979 1.05881 1.24338 1.04270 0.97429 0.83904 1.23545 1.05105 0.89396 1.01833 1.70442 1.19064 1.24583 1.09869 1.26255 0.99015 0.86544 0.90012 1.20454 0.91364 0.88890 0.96887 1.60709 1.01273 1.44506 1.24177 1.19371 0.93225 0.86993 0.91419 0.96265 1.21564 1.11383 1.09546 1.16099 0.94884 1.25781 0.95039 0.99118 0.97540 1.70129 1.14611 1.25327 1.47503 0.86144 0.80010 0.79224 0.79524 1.19970 1.21278 1.14511 1.21753 0.97670 0.99458 0.95822 1.21777 0.97290 1.00884 0.99989 1.84402 1.63725 1.23476 1.37480 0.93599 0.89101 0.92061 0.89343 0.86046 0.77572 0.91381 0.86999 0.84634 0.92416 0.93745 0.93909 0.92378 0.93115 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.89 71.98 0.71 -1.04 16 2 C -0.04 -0.51 6.49 29.85 0.19 -0.32 16 3 C -0.05 -1.15 6.64 24.79 0.16 -0.98 16 4 C -0.06 -1.64 11.80 83.40 0.98 -0.66 16 5 N -0.51 -17.82 11.29 -303.83 -3.43 -21.25 16 6 C 0.19 6.48 7.82 88.34 0.69 7.17 16 7 C 0.15 5.32 5.72 85.56 0.49 5.81 16 8 N -0.67 -27.82 5.97 -499.48 -2.98 -30.80 16 9 C 0.20 9.06 1.74 44.17 0.08 9.13 16 10 H 0.02 0.87 6.16 -2.38 -0.01 0.85 16 11 C -0.55 -30.95 9.00 25.60 0.23 -30.72 16 12 H 0.03 2.09 7.62 -2.91 -0.02 2.07 16 13 C 0.02 1.41 5.30 84.66 0.45 1.86 16 14 N -0.94 -58.09 13.96 21.45 0.30 -57.80 16 15 Si 0.93 42.51 25.86 68.60 1.77 44.29 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 18 H -0.22 -9.09 5.65 99.48 0.56 -8.52 16 19 C -0.11 -4.56 4.95 30.59 0.15 -4.41 16 20 C -0.14 -4.68 9.49 71.98 0.68 -3.99 16 21 O -0.20 -6.43 10.78 -3.74 -0.04 -6.48 16 22 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.21 4.04 8.06 -2.91 -0.02 4.01 16 28 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 29 H 0.11 3.38 6.63 -2.39 -0.02 3.37 16 30 H 0.34 15.20 7.79 -89.69 -0.70 14.50 16 31 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.87 5.17 -2.39 -0.01 1.85 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.96 6.28 -2.39 -0.02 1.94 16 Total: -1.00 -68.18 295.78 0.67 -67.50 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.23 Total: 22.69 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 4.83 Total: -18.16 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -6.11 Total: -109.84 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.04 Total: -6.48 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.77 Total: 44.29 kcal Total: -68.18 0.67 -67.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231648742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.978 kcal (2) G-P(sol) polarization free energy of solvation -68.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds