Wall clock time and date at job start Sun Mar 29 2020 22:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47485 * 2 1 4 4 H 1.09000 * 109.46742 * 305.65301 * 3 2 1 5 5 C 1.50702 * 109.47028 * 185.65606 * 3 2 1 6 6 H 1.07998 * 119.99697 * 239.99748 * 5 3 2 7 7 C 1.37877 * 120.00256 * 59.99814 * 5 3 2 8 8 N 1.31509 * 120.00006 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47132 * 60.00404 * 9 7 5 11 11 H 1.48502 * 109.46744 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47269 * 300.00124 * 9 7 5 13 13 N 1.46901 * 109.47281 * 65.65382 * 3 2 1 14 14 C 1.46895 * 110.99951 * 205.57873 * 13 3 2 15 15 C 1.50707 * 109.47009 * 183.75804 * 14 13 3 16 16 N 1.30253 * 125.62276 * 89.99597 * 15 14 13 17 17 C 1.34476 * 108.69996 * 179.97438 * 16 15 14 18 18 C 1.50692 * 126.16492 * 180.02562 * 17 16 15 19 19 C 1.34326 * 107.66852 * 0.02562 * 17 16 15 20 20 C 1.50706 * 126.44108 * 180.02562 * 19 17 16 21 21 O 1.33966 * 125.61119 * 269.68769 * 15 14 13 22 22 H 1.08994 * 109.47373 * 295.55835 * 1 2 3 23 23 H 1.09002 * 109.46318 * 55.55648 * 1 2 3 24 24 H 1.08999 * 109.47204 * 175.55210 * 1 2 3 25 25 H 1.09006 * 109.47482 * 239.99531 * 2 1 3 26 26 H 1.09000 * 109.47028 * 119.99804 * 2 1 3 27 27 H 0.96999 * 119.99970 * 179.97438 * 8 7 5 28 28 H 1.00907 * 110.99583 * 329.52889 * 13 3 2 29 29 H 1.08993 * 109.47475 * 63.75038 * 14 13 3 30 30 H 1.08999 * 109.47119 * 303.75012 * 14 13 3 31 31 H 1.09001 * 109.47164 * 89.97370 * 18 17 16 32 32 H 1.09001 * 109.47385 * 209.97336 * 18 17 16 33 33 H 1.09000 * 109.47239 * 329.97502 * 18 17 16 34 34 H 1.09002 * 109.47292 * 90.00318 * 20 19 17 35 35 H 1.09005 * 109.46963 * 209.99753 * 20 19 17 36 36 H 1.08993 * 109.47279 * 329.99563 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8351 5 6 3.5406 1.4447 -0.1400 6 1 4.1542 1.8863 0.6312 7 6 4.1300 0.8829 -1.2527 8 7 3.3828 0.3447 -2.1916 9 14 5.9899 0.8863 -1.4265 10 1 6.5947 0.1480 -0.2889 11 1 6.3690 0.2265 -2.7017 12 1 6.4844 2.2865 -1.4268 13 7 1.6651 2.0945 1.2618 14 6 1.5712 3.5509 1.0942 15 6 1.2761 4.1918 2.4259 16 7 2.1659 4.6029 3.2837 17 6 1.5302 5.1178 4.3510 18 6 2.1819 5.7065 5.5756 19 6 0.2096 5.0129 4.1287 20 6 -0.8923 5.4608 5.0541 21 8 0.0554 4.4378 2.9198 22 1 -0.3634 0.4433 0.9270 23 1 -0.3632 0.5813 -0.8476 24 1 -0.3633 -1.0246 -0.0797 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7975 -0.0501 -2.9746 28 1 0.8020 1.7156 1.6220 29 1 0.7704 3.7850 0.3928 30 1 2.5158 3.9338 0.7081 31 1 2.3409 6.7743 5.4248 32 1 1.5356 5.5539 6.4400 33 1 3.1405 5.2172 5.7478 34 1 -1.1565 6.4945 4.8309 35 1 -1.7659 4.8242 4.9137 36 1 -0.5516 5.3877 6.0869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231655939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:25 Heat of formation + Delta-G solvation = 8.802490 kcal Electronic energy + Delta-G solvation = -16887.479071 eV Core-core repulsion = 14179.950996 eV Total energy + Delta-G solvation = -2707.528075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.03538 -36.51841 -34.91352 -33.45429 -32.17620 -31.10923 -29.12505 -27.60742 -25.86218 -23.84452 -22.54196 -21.33261 -20.22802 -19.61475 -16.61514 -16.31226 -16.21463 -15.07172 -14.74931 -14.14688 -13.99029 -13.79844 -13.25816 -13.09937 -12.96410 -12.59730 -12.33540 -12.28808 -12.09551 -11.96671 -11.43096 -11.13926 -10.81906 -10.63734 -10.63153 -10.10813 -9.96472 -9.82228 -9.67742 -9.14568 -8.34566 -8.28606 -7.37892 -5.96978 -4.01207 1.67377 2.91336 2.97373 3.37664 3.40845 3.45862 4.30764 4.47132 4.84484 4.96297 5.09360 5.28004 5.30118 5.40991 5.46272 5.61064 5.64900 5.77268 5.91378 6.10855 6.13987 6.19322 6.25635 6.35092 6.39665 6.61780 6.81500 7.01595 7.10400 7.38540 7.73101 7.90422 8.11468 8.16526 8.33430 8.64947 9.07161 9.64038 11.08478 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.005905 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.738511 B = 4740.419386 C = 5510.422233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.221 3.779 4 H 0.007 0.993 5 C -0.497 4.497 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.162 3.838 15 C 0.216 3.784 16 N -0.468 5.468 17 C -0.017 4.017 18 C -0.068 4.068 19 C -0.071 4.071 20 C -0.061 4.061 21 O -0.206 6.206 22 H 0.034 0.966 23 H 0.043 0.957 24 H 0.039 0.961 25 H 0.103 0.897 26 H 0.042 0.958 27 H 0.260 0.740 28 H 0.321 0.679 29 H 0.046 0.954 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 8.265 11.061 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.114 3.886 4 H 0.024 0.976 5 C -0.536 4.536 6 H 0.083 0.917 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.311 5.311 14 C 0.032 3.968 15 C 0.008 3.992 16 N -0.198 5.198 17 C -0.137 4.137 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.118 4.118 21 O -0.094 6.094 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.064 0.936 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.726 8.135 10.986 15.235 hybrid contribution -0.572 0.027 -0.560 0.801 sum -7.297 8.163 10.426 15.119 Atomic orbital electron populations 1.21895 0.99536 0.99867 0.99587 1.21777 0.91269 0.99988 1.03355 1.19219 0.95879 0.90138 0.83344 0.97553 1.21192 0.91019 1.36901 1.04438 0.91748 1.24943 0.98239 0.95461 0.95745 1.69856 1.34865 1.39378 1.09576 0.86569 0.85577 0.78244 0.77074 1.20272 1.21494 1.20316 1.60698 1.36716 0.99932 1.33768 1.20312 1.02517 0.90442 0.83575 1.26679 0.76075 0.98070 0.98391 1.70410 1.33594 1.14267 1.01486 1.21553 0.90273 1.04204 0.97676 1.20065 1.00806 1.00118 0.91497 1.23029 0.97380 1.04931 0.87115 1.20169 0.94488 1.01415 0.95711 1.84385 1.35292 1.60831 1.28888 0.94687 0.93747 0.94229 0.87913 0.93872 0.92973 0.86150 0.93589 0.86464 0.91069 0.91153 0.90633 0.90334 0.90682 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.67 37.16 0.36 -2.54 16 2 C -0.13 -2.93 5.36 -26.73 -0.14 -3.07 16 3 C 0.22 5.43 2.02 -68.86 -0.14 5.29 16 4 H 0.01 0.18 7.84 -51.93 -0.41 -0.23 16 5 C -0.50 -13.67 8.58 -34.44 -0.30 -13.97 16 6 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 7 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.22 11.29 55.43 0.63 -24.59 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 N -0.68 -14.75 6.26 -109.22 -0.68 -15.44 16 14 C 0.16 3.19 6.08 -4.98 -0.03 3.16 16 15 C 0.22 4.10 7.89 -12.94 -0.10 4.00 16 16 N -0.47 -9.15 11.29 -7.36 -0.08 -9.23 16 17 C -0.02 -0.27 7.11 -82.82 -0.59 -0.86 16 18 C -0.07 -0.77 10.22 36.00 0.37 -0.40 16 19 C -0.07 -1.05 7.39 -35.69 -0.26 -1.31 16 20 C -0.06 -0.56 10.22 36.01 0.37 -0.19 16 21 O -0.21 -3.58 10.78 5.35 0.06 -3.52 16 22 H 0.03 0.61 6.61 -51.93 -0.34 0.26 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.32 6.47 6.61 -39.29 -0.26 6.21 16 29 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.12 2.45 7.96 -51.93 -0.41 2.04 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.60 7.16 -51.93 -0.37 0.22 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.61 7.17 -51.93 -0.37 0.24 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -30.49 300.82 -6.53 -37.02 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.40 Total: 3.06 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.56 Total: -8.42 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.14 Total: -49.26 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: 0.06 Total: -3.52 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.49 -6.53 -37.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231655939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.822 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds