Wall clock time and date at job start Sun Mar 29 2020 22:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47485 * 2 1 4 4 H 1.09000 * 109.46742 * 305.65301 * 3 2 1 5 5 C 1.50702 * 109.47028 * 185.65606 * 3 2 1 6 6 H 1.07998 * 119.99697 * 239.99748 * 5 3 2 7 7 C 1.37877 * 120.00256 * 59.99814 * 5 3 2 8 8 N 1.31509 * 120.00006 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47132 * 60.00404 * 9 7 5 11 11 H 1.48502 * 109.46744 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47269 * 300.00124 * 9 7 5 13 13 N 1.46901 * 109.47281 * 65.65382 * 3 2 1 14 14 C 1.46895 * 110.99951 * 205.57873 * 13 3 2 15 15 C 1.50707 * 109.47009 * 183.75804 * 14 13 3 16 16 N 1.30253 * 125.62276 * 89.99597 * 15 14 13 17 17 C 1.34476 * 108.69996 * 179.97438 * 16 15 14 18 18 C 1.50692 * 126.16492 * 180.02562 * 17 16 15 19 19 C 1.34326 * 107.66852 * 0.02562 * 17 16 15 20 20 C 1.50706 * 126.44108 * 180.02562 * 19 17 16 21 21 O 1.33966 * 125.61119 * 269.68769 * 15 14 13 22 22 H 1.08994 * 109.47373 * 295.55835 * 1 2 3 23 23 H 1.09002 * 109.46318 * 55.55648 * 1 2 3 24 24 H 1.08999 * 109.47204 * 175.55210 * 1 2 3 25 25 H 1.09006 * 109.47482 * 239.99531 * 2 1 3 26 26 H 1.09000 * 109.47028 * 119.99804 * 2 1 3 27 27 H 0.96999 * 119.99970 * 179.97438 * 8 7 5 28 28 H 1.00907 * 110.99583 * 329.52889 * 13 3 2 29 29 H 1.08993 * 109.47475 * 63.75038 * 14 13 3 30 30 H 1.08999 * 109.47119 * 303.75012 * 14 13 3 31 31 H 1.09001 * 109.47164 * 89.97370 * 18 17 16 32 32 H 1.09001 * 109.47385 * 209.97336 * 18 17 16 33 33 H 1.09000 * 109.47239 * 329.97502 * 18 17 16 34 34 H 1.09002 * 109.47292 * 90.00318 * 20 19 17 35 35 H 1.09005 * 109.46963 * 209.99753 * 20 19 17 36 36 H 1.08993 * 109.47279 * 329.99563 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8351 5 6 3.5406 1.4447 -0.1400 6 1 4.1542 1.8863 0.6312 7 6 4.1300 0.8829 -1.2527 8 7 3.3828 0.3447 -2.1916 9 14 5.9899 0.8863 -1.4265 10 1 6.5947 0.1480 -0.2889 11 1 6.3690 0.2265 -2.7017 12 1 6.4844 2.2865 -1.4268 13 7 1.6651 2.0945 1.2618 14 6 1.5712 3.5509 1.0942 15 6 1.2761 4.1918 2.4259 16 7 2.1659 4.6029 3.2837 17 6 1.5302 5.1178 4.3510 18 6 2.1819 5.7065 5.5756 19 6 0.2096 5.0129 4.1287 20 6 -0.8923 5.4608 5.0541 21 8 0.0554 4.4378 2.9198 22 1 -0.3634 0.4433 0.9270 23 1 -0.3632 0.5813 -0.8476 24 1 -0.3633 -1.0246 -0.0797 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7975 -0.0501 -2.9746 28 1 0.8020 1.7156 1.6220 29 1 0.7704 3.7850 0.3928 30 1 2.5158 3.9338 0.7081 31 1 2.3409 6.7743 5.4248 32 1 1.5356 5.5539 6.4400 33 1 3.1405 5.2172 5.7478 34 1 -1.1565 6.4945 4.8309 35 1 -1.7659 4.8242 4.9137 36 1 -0.5516 5.3877 6.0869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231655939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:24 Heat of formation + Delta-G solvation = -13.512650 kcal Electronic energy + Delta-G solvation = -16888.446728 eV Core-core repulsion = 14179.950996 eV Total energy + Delta-G solvation = -2708.495732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.31782 -38.33162 -36.16493 -35.01648 -33.86429 -32.71092 -30.04878 -29.26816 -27.56820 -25.23362 -24.26863 -22.68668 -21.57665 -21.42946 -18.41912 -17.86069 -17.56894 -16.80928 -16.52391 -15.75847 -15.35616 -15.06657 -14.54611 -14.22216 -14.05550 -14.02487 -13.71098 -13.66350 -13.26171 -13.10504 -13.03749 -12.89273 -12.73312 -12.55548 -12.00333 -11.93520 -11.63990 -11.52211 -11.42352 -11.10548 -10.43458 -9.47878 -9.17466 -8.07642 -6.19129 0.42132 1.43301 1.44381 1.52484 1.63097 1.71071 2.44986 3.03396 3.18373 3.66419 3.83390 3.91776 4.21718 4.33008 4.45425 4.50638 4.55224 4.64806 4.69522 4.74391 4.80021 4.91046 5.00172 5.05604 5.12084 5.17656 5.20963 5.32405 5.48097 5.53528 5.73139 5.84470 6.26247 6.38113 6.78511 6.85521 6.91964 7.49343 8.95573 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.005905 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.738511 B = 4740.419386 C = 5510.422233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.227 3.773 4 H -0.016 1.016 5 C -0.517 4.517 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.276 1.276 13 N -0.682 5.682 14 C 0.170 3.830 15 C 0.190 3.810 16 N -0.499 5.499 17 C -0.046 4.046 18 C -0.064 4.064 19 C -0.060 4.060 20 C -0.061 4.061 21 O -0.213 6.213 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.262 0.738 28 H 0.331 0.669 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.120 9.013 12.813 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.120 3.880 4 H 0.001 0.999 5 C -0.555 4.555 6 H 0.065 0.935 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.201 1.201 13 N -0.316 5.316 14 C 0.040 3.960 15 C -0.017 4.017 16 N -0.230 5.230 17 C -0.165 4.165 18 C -0.121 4.121 19 C -0.112 4.112 20 C -0.117 4.117 21 O -0.101 6.101 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.854 8.889 12.748 17.413 hybrid contribution -0.274 -0.132 -1.010 1.054 sum -8.129 8.757 11.738 16.749 Atomic orbital electron populations 1.21761 0.96110 1.01400 1.00493 1.21602 0.94341 0.98510 1.01471 1.18994 0.94331 0.90931 0.83754 0.99853 1.21399 0.92656 1.37169 1.04314 0.93527 1.25597 1.02119 0.95119 0.95460 1.69964 1.36243 1.39590 1.09788 0.85680 0.80931 0.78205 0.77189 1.20183 1.20581 1.20108 1.60532 1.37532 1.01235 1.32298 1.20054 1.01982 0.89105 0.84896 1.26191 0.76904 1.00132 0.98489 1.70357 1.34948 1.14786 1.02908 1.22290 0.91090 1.04956 0.98193 1.20218 1.00677 1.00506 0.90726 1.24142 0.98732 1.02265 0.86106 1.20505 0.92987 1.02567 0.95626 1.84372 1.34436 1.61084 1.30186 0.92802 0.93944 0.92195 0.90775 0.94633 0.92879 0.85053 0.92169 0.88637 0.89586 0.87753 0.91747 0.88115 0.89714 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 9.67 71.98 0.70 -4.52 16 2 C -0.12 -5.69 5.36 30.59 0.16 -5.53 16 3 C 0.23 11.48 2.02 44.17 0.09 11.57 16 4 H -0.02 -0.87 7.84 -2.39 -0.02 -0.89 16 5 C -0.52 -29.28 8.58 25.60 0.22 -29.06 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -52.33 11.29 21.45 0.24 -52.08 16 9 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.68 -30.25 6.26 -499.47 -3.13 -33.38 16 14 C 0.17 6.89 6.08 85.56 0.52 7.41 16 15 C 0.19 7.30 7.89 88.34 0.70 8.00 16 16 N -0.50 -19.64 11.29 -291.99 -3.30 -22.94 16 17 C -0.05 -1.38 7.11 41.26 0.29 -1.09 16 18 C -0.06 -1.30 10.22 71.23 0.73 -0.57 16 19 C -0.06 -1.61 7.39 24.79 0.18 -1.43 16 20 C -0.06 -0.86 10.22 71.24 0.73 -0.13 16 21 O -0.21 -7.21 10.78 -3.77 -0.04 -7.25 16 22 H 0.05 1.79 6.61 -2.39 -0.02 1.77 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 25 H 0.07 3.95 5.94 -2.38 -0.01 3.93 16 26 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.33 13.30 6.61 -89.69 -0.59 12.71 16 29 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 30 H 0.10 4.23 7.96 -2.39 -0.02 4.21 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.10 1.35 7.16 -2.39 -0.02 1.33 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.12 1.03 7.17 -2.39 -0.02 1.01 16 Total: -1.00 -67.43 300.82 1.04 -66.38 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.48 Total: 16.37 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 4.77 Total: -14.03 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -6.18 Total: -108.41 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.04 Total: -7.25 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.43 1.04 -66.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231655939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.868 kcal (2) G-P(sol) polarization free energy of solvation -67.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds