Wall clock time and date at job start Sun Mar 29 2020 22:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46832 * 2 1 4 4 H 1.08999 * 109.47115 * 56.50286 * 3 2 1 5 5 C 1.50704 * 109.46833 * 176.49652 * 3 2 1 6 6 H 1.08001 * 119.99491 * 119.99968 * 5 3 2 7 7 C 1.37872 * 120.00177 * 300.00632 * 5 3 2 8 8 N 1.31520 * 120.00060 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99982 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46894 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47305 * 119.99630 * 9 7 5 12 12 H 1.48504 * 109.46815 * 239.99605 * 9 7 5 13 13 N 1.46898 * 109.47654 * 296.49894 * 3 2 1 14 14 C 1.46892 * 111.00257 * 149.88232 * 13 3 2 15 15 H 1.09001 * 109.47164 * 326.40207 * 14 13 3 16 16 C 1.53002 * 109.47330 * 86.40646 * 14 13 3 17 17 C 1.50705 * 109.47242 * 206.40571 * 14 13 3 18 18 N 1.30258 * 125.61728 * 314.97299 * 17 14 13 19 19 C 1.34479 * 108.70006 * 180.02562 * 18 17 14 20 20 C 1.34328 * 107.66893 * 0.02562 * 19 18 17 21 21 C 1.50701 * 126.44364 * 179.73184 * 20 19 18 22 22 O 1.33967 * 125.61917 * 134.99842 * 17 14 13 23 23 H 1.08998 * 109.47050 * 175.29926 * 1 2 3 24 24 H 1.09002 * 109.47023 * 295.30028 * 1 2 3 25 25 H 1.09003 * 109.47021 * 55.29721 * 1 2 3 26 26 H 1.08997 * 109.46533 * 240.00465 * 2 1 3 27 27 H 1.08998 * 109.47128 * 120.00429 * 2 1 3 28 28 H 0.96996 * 119.99832 * 179.97438 * 8 7 5 29 29 H 1.00897 * 110.99837 * 273.84093 * 13 3 2 30 30 H 1.08995 * 109.46934 * 59.99705 * 16 14 13 31 31 H 1.08997 * 109.47095 * 179.97438 * 16 14 13 32 32 H 1.09001 * 109.46680 * 300.00291 * 16 14 13 33 33 H 1.07999 * 126.16362 * 180.02562 * 19 18 17 34 34 H 1.08998 * 109.46948 * 90.02856 * 21 20 19 35 35 H 1.08996 * 109.47322 * 210.02343 * 21 20 19 36 36 H 1.08995 * 109.47513 * 330.03076 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6264 1.9741 0.8570 5 6 3.5445 1.4434 0.0868 6 1 4.1305 1.8948 -0.7001 7 6 4.1729 0.8679 1.1707 8 7 3.4592 0.3185 2.1292 9 14 6.0378 0.8696 1.2787 10 1 6.6021 1.5452 0.0827 11 1 6.4621 1.5944 2.5034 12 1 6.5316 -0.5297 1.3354 13 7 1.6207 2.1102 -1.2394 14 6 1.4289 3.5504 -1.0227 15 1 1.0555 3.7192 -0.0126 16 6 2.7644 4.2753 -1.2006 17 6 0.4326 4.0804 -2.0215 18 7 0.4174 3.8084 -3.2953 19 6 -0.6125 4.4605 -3.8632 20 6 -1.2404 5.1510 -2.8971 21 6 -2.4493 6.0341 -3.0693 22 8 -0.5830 4.9095 -1.7458 23 1 -0.3633 -1.0242 -0.0842 24 1 -0.3633 0.4392 0.9291 25 1 -0.3633 0.5851 -0.8449 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9013 -0.0867 2.8916 29 1 2.2818 1.9413 -1.9827 30 1 3.1377 4.1064 -2.2107 31 1 2.6220 5.3439 -1.0402 32 1 3.4850 3.8918 -0.4782 33 1 -0.8855 4.4339 -4.9078 34 1 -3.3542 5.4418 -2.9334 35 1 -2.4238 6.8335 -2.3287 36 1 -2.4445 6.4657 -4.0701 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231742363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:27 Heat of formation + Delta-G solvation = -10.051126 kcal Electronic energy + Delta-G solvation = -17255.827559 eV Core-core repulsion = 14547.481930 eV Total energy + Delta-G solvation = -2708.345629 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.20409 -38.64583 -35.74744 -35.19672 -33.56528 -32.80794 -30.30784 -28.10517 -27.43419 -24.75917 -24.40101 -22.67592 -21.57543 -21.39941 -18.68488 -17.92174 -17.59702 -16.78059 -16.11463 -15.74685 -15.25916 -15.01916 -14.41674 -14.35602 -14.05755 -13.89327 -13.66190 -13.28778 -13.18073 -13.11504 -13.00056 -12.63893 -12.51136 -12.26518 -12.21162 -11.98316 -11.51813 -11.43728 -11.35314 -10.98820 -10.43469 -9.51565 -9.13795 -8.03216 -6.22014 0.54809 1.41235 1.45431 1.54297 1.71117 1.83628 2.44317 3.19033 3.24983 3.68044 3.95035 4.10919 4.17057 4.28781 4.50366 4.60504 4.66998 4.71772 4.75175 4.81099 4.92723 4.94199 5.11727 5.15627 5.26197 5.29144 5.40033 5.47619 5.54545 5.63221 5.77881 6.08869 6.18155 6.35686 6.73085 6.92061 7.00972 7.48419 8.95760 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034875 B = 0.006195 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.672494 B = 4518.517288 C = 4977.523047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C 0.226 3.774 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.060 0.940 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.669 5.669 14 C 0.189 3.811 15 H 0.085 0.915 16 C -0.160 4.160 17 C 0.198 3.802 18 N -0.495 5.495 19 C -0.064 4.064 20 C -0.063 4.063 21 C -0.061 4.061 22 O -0.220 6.220 23 H 0.045 0.955 24 H 0.032 0.968 25 H 0.049 0.951 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.261 0.739 29 H 0.341 0.659 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.207 0.793 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 9.886 -8.392 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C 0.118 3.882 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.079 0.921 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.300 5.300 14 C 0.076 3.924 15 H 0.103 0.897 16 C -0.219 4.219 17 C -0.010 4.010 18 N -0.224 5.224 19 C -0.202 4.202 20 C -0.115 4.115 21 C -0.117 4.117 22 O -0.107 6.107 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.159 0.841 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.224 0.776 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.781 9.260 -8.386 15.270 hybrid contribution 1.495 0.368 0.732 1.705 sum -7.286 9.628 -7.655 14.296 Atomic orbital electron populations 1.21574 0.96950 0.99816 1.00070 1.21377 0.93920 0.98517 1.00223 1.19022 0.92231 0.91312 0.85653 0.97535 1.22151 0.93211 1.37348 1.06053 0.92143 1.25608 1.01821 0.94818 0.95499 1.70010 1.36365 1.38561 1.10166 0.85661 0.81420 0.77534 0.77903 1.19247 1.20942 1.21072 1.60444 1.53240 1.06475 1.09832 1.19587 0.90172 0.89610 0.93008 0.89660 1.22377 0.96204 1.00438 1.02874 1.26498 0.89917 0.91643 0.92904 1.70358 1.22342 1.23332 1.06338 1.23621 0.94671 0.99475 1.02456 1.24347 0.99839 1.04431 0.82932 1.20459 0.89283 0.96652 1.05348 1.84380 1.36240 1.53101 1.36998 0.93604 0.94898 0.93239 0.95378 0.91585 0.92967 0.84097 0.92216 0.91539 0.90596 0.77587 0.88674 0.89896 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 9.85 71.99 0.71 -4.59 16 2 C -0.10 -4.90 5.44 30.60 0.17 -4.74 16 3 C 0.23 11.01 2.01 44.17 0.09 11.10 16 4 H 0.01 0.36 7.32 -2.39 -0.02 0.34 16 5 C -0.55 -28.32 7.15 25.60 0.18 -28.14 16 6 H 0.06 3.06 6.95 -2.91 -0.02 3.04 16 7 C 0.02 1.20 5.30 84.65 0.45 1.64 16 8 N -0.91 -50.82 11.30 21.45 0.24 -50.58 16 9 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 N -0.67 -28.59 5.34 -477.16 -2.55 -31.14 16 14 C 0.19 7.28 3.13 44.17 0.14 7.41 16 15 H 0.09 3.41 7.35 -2.39 -0.02 3.40 16 16 C -0.16 -5.63 8.83 71.98 0.64 -4.99 16 17 C 0.20 7.29 7.19 88.34 0.64 7.93 16 18 N -0.49 -17.90 11.28 -303.82 -3.43 -21.32 16 19 C -0.06 -1.81 11.80 83.39 0.98 -0.82 16 20 C -0.06 -1.64 7.39 24.79 0.18 -1.46 16 21 C -0.06 -0.86 10.43 71.24 0.74 -0.12 16 22 O -0.22 -7.41 10.78 -3.78 -0.04 -7.45 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 3.55 5.98 -2.39 -0.01 3.53 16 28 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.34 14.78 8.01 -89.70 -0.72 14.06 16 30 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 2.95 6.27 -2.39 -0.01 2.94 16 33 H 0.21 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -60.97 299.01 1.52 -59.45 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.35 Total: 23.48 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.92 Total: -16.78 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -5.73 Total: -103.04 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.04 Total: -7.45 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -60.97 1.52 -59.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231742363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.397 kcal (2) G-P(sol) polarization free energy of solvation -60.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds