Wall clock time and date at job start Sun Mar 29 2020 22:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47567 * 2 1 4 4 H 1.09001 * 109.46791 * 305.64733 * 3 2 1 5 5 C 1.50695 * 109.47149 * 185.64153 * 3 2 1 6 6 H 1.07998 * 119.99848 * 239.99279 * 5 3 2 7 7 C 1.37880 * 119.99911 * 60.00219 * 5 3 2 8 8 N 1.31515 * 120.00065 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99719 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47221 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47243 * 120.00248 * 9 7 5 12 12 H 1.48503 * 109.46837 * 239.99550 * 9 7 5 13 13 N 1.46902 * 109.47215 * 65.63804 * 3 2 1 14 14 C 1.46899 * 111.00465 * 204.29566 * 13 3 2 15 15 H 1.09003 * 109.46626 * 326.20497 * 14 13 3 16 16 C 1.52992 * 109.47236 * 86.20500 * 14 13 3 17 17 C 1.50693 * 109.47160 * 206.20934 * 14 13 3 18 18 N 1.30252 * 125.61968 * 315.02292 * 17 14 13 19 19 C 1.34478 * 108.70200 * 179.97438 * 18 17 14 20 20 C 1.34331 * 107.67103 * 359.97438 * 19 18 17 21 21 C 1.50702 * 126.44397 * 180.02562 * 20 19 18 22 22 O 1.33971 * 125.62149 * 134.71407 * 17 14 13 23 23 H 1.09003 * 109.47055 * 293.71988 * 1 2 3 24 24 H 1.09004 * 109.46971 * 53.71462 * 1 2 3 25 25 H 1.08998 * 109.47177 * 173.71089 * 1 2 3 26 26 H 1.09005 * 109.46775 * 120.00275 * 2 1 3 27 27 H 1.08995 * 109.46945 * 239.99705 * 2 1 3 28 28 H 0.97000 * 119.99876 * 180.02562 * 8 7 5 29 29 H 1.00907 * 111.00279 * 328.25169 * 13 3 2 30 30 H 1.09000 * 109.47166 * 64.53478 * 16 14 13 31 31 H 1.09003 * 109.47009 * 184.53686 * 16 14 13 32 32 H 1.09003 * 109.47373 * 304.53104 * 16 14 13 33 33 H 1.08004 * 126.16567 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.47160 * 89.97232 * 21 20 19 35 35 H 1.09002 * 109.46801 * 209.97012 * 21 20 19 36 36 H 1.08995 * 109.46765 * 329.96832 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9846 -0.8351 5 6 3.5406 1.4446 -0.1397 6 1 4.1540 1.8864 0.6316 7 6 4.1302 0.8828 -1.2522 8 7 3.3832 0.3446 -2.1913 9 14 5.9901 0.8862 -1.4257 10 1 6.5964 1.5478 -0.2425 11 1 6.4813 -0.5122 -1.5173 12 1 6.3712 1.6262 -2.6555 13 7 1.6648 2.0946 1.2617 14 6 1.6006 3.5534 1.1016 15 1 2.3560 3.8737 0.3840 16 6 0.2133 3.9501 0.5929 17 6 1.8569 4.2163 2.4304 18 7 1.3326 3.8617 3.5687 19 6 1.7934 4.6817 4.5298 20 6 2.6260 5.5621 3.9500 21 6 3.3778 6.6712 4.6397 22 8 2.6662 5.2639 2.6365 23 1 -0.3633 0.4134 0.9409 24 1 -0.3633 0.6082 -0.8284 25 1 -0.3633 -1.0215 -0.1126 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.7980 -0.0509 -2.9738 29 1 0.7910 1.7304 1.6111 30 1 -0.5345 3.7023 1.3463 31 1 0.1909 5.0222 0.3975 32 1 -0.0048 3.4084 -0.3275 33 1 1.5397 4.6400 5.5788 34 1 4.3479 6.3010 4.9714 35 1 3.5229 7.4985 3.9450 36 1 2.8065 7.0163 5.5014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231742366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:29 Heat of formation + Delta-G solvation = 11.717960 kcal Electronic energy + Delta-G solvation = -17261.530994 eV Core-core repulsion = 14554.129344 eV Total energy + Delta-G solvation = -2707.401651 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.90092 -37.04058 -34.32137 -33.62535 -32.01623 -31.36974 -28.72616 -26.51414 -26.10322 -23.44130 -22.66257 -21.41690 -20.11740 -19.59665 -16.72012 -16.35350 -16.15489 -14.97299 -14.73123 -14.31182 -13.91306 -13.56635 -13.20015 -13.10732 -12.83340 -12.57101 -12.26245 -12.22570 -11.75723 -11.55862 -11.17600 -10.89639 -10.86527 -10.79232 -10.59562 -10.04503 -9.97294 -9.81285 -9.63782 -9.11571 -8.37174 -8.28035 -7.33196 -5.98784 -4.03081 1.81315 2.97632 3.13021 3.30991 3.39171 3.45226 4.44365 4.50883 4.95936 5.13024 5.24884 5.31201 5.38648 5.43806 5.57482 5.62395 5.70646 5.95794 6.17888 6.19281 6.19814 6.25534 6.34089 6.44565 6.46253 6.74940 6.86148 7.06500 7.14576 7.44342 7.76627 7.90294 8.14539 8.26833 8.36104 8.70991 9.05244 9.62335 11.06370 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.007487 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.796192 B = 3739.013202 C = 4629.560545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.008 0.992 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.671 5.671 14 C 0.183 3.817 15 H 0.109 0.891 16 C -0.172 4.172 17 C 0.228 3.772 18 N -0.478 5.478 19 C -0.044 4.044 20 C -0.073 4.073 21 C -0.062 4.062 22 O -0.203 6.203 23 H 0.037 0.963 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.101 0.899 28 H 0.259 0.741 29 H 0.331 0.669 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.176 0.824 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 9.146 8.418 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C 0.114 3.886 4 H 0.025 0.975 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.304 5.304 14 C 0.070 3.930 15 H 0.127 0.873 16 C -0.231 4.231 17 C 0.020 3.980 18 N -0.206 5.206 19 C -0.183 4.183 20 C -0.126 4.126 21 C -0.119 4.119 22 O -0.091 6.091 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.069 0.931 29 H 0.151 0.849 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.193 0.807 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.629 8.556 8.519 12.608 hybrid contribution 0.715 0.552 -0.541 1.053 sum -2.915 9.108 7.978 12.454 Atomic orbital electron populations 1.21895 0.99452 0.99863 0.99654 1.21752 0.91369 0.99947 1.03240 1.19246 0.95559 0.90169 0.83640 0.97457 1.21261 0.91236 1.36759 1.04267 0.92081 1.24935 0.98108 0.95519 0.95795 1.69875 1.34606 1.39396 1.09568 0.86505 0.85807 0.77653 0.77854 1.19828 1.21071 1.21179 1.60357 1.36968 0.99527 1.33519 1.19702 0.97512 0.90305 0.85492 0.87340 1.22465 0.96810 1.01772 1.02093 1.26732 0.88255 0.85163 0.97838 1.70386 1.26132 1.25803 0.98322 1.23026 1.00177 0.94737 1.00347 1.23300 1.04725 1.02911 0.81669 1.20159 0.99219 0.93612 0.98903 1.84393 1.54743 1.43153 1.26763 0.94429 0.93815 0.94315 0.93904 0.88068 0.93073 0.84949 0.92041 0.92521 0.90752 0.80728 0.90234 0.90761 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.63 37.16 0.36 -2.52 16 2 C -0.12 -2.90 5.37 -26.73 -0.14 -3.04 16 3 C 0.22 5.35 1.83 -68.87 -0.13 5.23 16 4 H 0.01 0.20 7.19 -51.93 -0.37 -0.17 16 5 C -0.50 -13.59 8.46 -34.44 -0.29 -13.88 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.56 5.29 -17.82 -0.09 1.47 16 8 N -0.89 -24.99 11.29 55.43 0.63 -24.37 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.67 -14.49 6.02 -102.18 -0.61 -15.11 16 14 C 0.18 3.55 2.93 -68.87 -0.20 3.35 16 15 H 0.11 2.27 7.60 -51.93 -0.39 1.87 16 16 C -0.17 -2.78 9.14 37.15 0.34 -2.44 16 17 C 0.23 4.41 7.19 -12.95 -0.09 4.31 16 18 N -0.48 -9.07 11.28 -11.10 -0.13 -9.20 16 19 C -0.04 -0.69 11.80 -17.77 -0.21 -0.90 16 20 C -0.07 -1.09 7.39 -35.69 -0.26 -1.36 16 21 C -0.06 -0.60 10.43 36.01 0.38 -0.22 16 22 O -0.20 -3.73 10.78 5.36 0.06 -3.68 16 23 H 0.04 0.65 6.67 -51.93 -0.35 0.31 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.10 2.63 5.94 -51.93 -0.31 2.33 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.33 6.73 6.34 -39.29 -0.25 6.48 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.21 7.46 -51.93 -0.39 0.82 16 33 H 0.18 2.10 8.06 -52.48 -0.42 1.68 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -29.97 300.20 -6.31 -36.28 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.41 Total: 5.08 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -0.35 Total: -10.01 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.11 Total: -48.67 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: 0.06 Total: -3.68 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.97 -6.31 -36.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231742366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.998 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds