Wall clock time and date at job start Sun Mar 29 2020 22:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47567 * 2 1 4 4 H 1.09001 * 109.46791 * 305.64733 * 3 2 1 5 5 C 1.50695 * 109.47149 * 185.64153 * 3 2 1 6 6 H 1.07998 * 119.99848 * 239.99279 * 5 3 2 7 7 C 1.37880 * 119.99911 * 60.00219 * 5 3 2 8 8 N 1.31515 * 120.00065 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99719 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47221 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47243 * 120.00248 * 9 7 5 12 12 H 1.48503 * 109.46837 * 239.99550 * 9 7 5 13 13 N 1.46902 * 109.47215 * 65.63804 * 3 2 1 14 14 C 1.46899 * 111.00465 * 204.29566 * 13 3 2 15 15 H 1.09003 * 109.46626 * 326.20497 * 14 13 3 16 16 C 1.52992 * 109.47236 * 86.20500 * 14 13 3 17 17 C 1.50693 * 109.47160 * 206.20934 * 14 13 3 18 18 N 1.30252 * 125.61968 * 315.02292 * 17 14 13 19 19 C 1.34478 * 108.70200 * 179.97438 * 18 17 14 20 20 C 1.34331 * 107.67103 * 359.97438 * 19 18 17 21 21 C 1.50702 * 126.44397 * 180.02562 * 20 19 18 22 22 O 1.33971 * 125.62149 * 134.71407 * 17 14 13 23 23 H 1.09003 * 109.47055 * 293.71988 * 1 2 3 24 24 H 1.09004 * 109.46971 * 53.71462 * 1 2 3 25 25 H 1.08998 * 109.47177 * 173.71089 * 1 2 3 26 26 H 1.09005 * 109.46775 * 120.00275 * 2 1 3 27 27 H 1.08995 * 109.46945 * 239.99705 * 2 1 3 28 28 H 0.97000 * 119.99876 * 180.02562 * 8 7 5 29 29 H 1.00907 * 111.00279 * 328.25169 * 13 3 2 30 30 H 1.09000 * 109.47166 * 64.53478 * 16 14 13 31 31 H 1.09003 * 109.47009 * 184.53686 * 16 14 13 32 32 H 1.09003 * 109.47373 * 304.53104 * 16 14 13 33 33 H 1.08004 * 126.16567 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.47160 * 89.97232 * 21 20 19 35 35 H 1.09002 * 109.46801 * 209.97012 * 21 20 19 36 36 H 1.08995 * 109.46765 * 329.96832 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9846 -0.8351 5 6 3.5406 1.4446 -0.1397 6 1 4.1540 1.8864 0.6316 7 6 4.1302 0.8828 -1.2522 8 7 3.3832 0.3446 -2.1913 9 14 5.9901 0.8862 -1.4257 10 1 6.5964 1.5478 -0.2425 11 1 6.4813 -0.5122 -1.5173 12 1 6.3712 1.6262 -2.6555 13 7 1.6648 2.0946 1.2617 14 6 1.6006 3.5534 1.1016 15 1 2.3560 3.8737 0.3840 16 6 0.2133 3.9501 0.5929 17 6 1.8569 4.2163 2.4304 18 7 1.3326 3.8617 3.5687 19 6 1.7934 4.6817 4.5298 20 6 2.6260 5.5621 3.9500 21 6 3.3778 6.6712 4.6397 22 8 2.6662 5.2639 2.6365 23 1 -0.3633 0.4134 0.9409 24 1 -0.3633 0.6082 -0.8284 25 1 -0.3633 -1.0215 -0.1126 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.7980 -0.0509 -2.9738 29 1 0.7910 1.7304 1.6111 30 1 -0.5345 3.7023 1.3463 31 1 0.1909 5.0222 0.3975 32 1 -0.0048 3.4084 -0.3275 33 1 1.5397 4.6400 5.5788 34 1 4.3479 6.3010 4.9714 35 1 3.5229 7.4985 3.9450 36 1 2.8065 7.0163 5.5014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231742366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:29 Heat of formation + Delta-G solvation = -9.870046 kcal Electronic energy + Delta-G solvation = -17262.467121 eV Core-core repulsion = 14554.129344 eV Total energy + Delta-G solvation = -2708.337777 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.21565 -38.75350 -35.78225 -35.23419 -33.67237 -32.75643 -30.32832 -28.05886 -27.62256 -24.98386 -24.31647 -22.70113 -21.55301 -21.45553 -18.34077 -18.07815 -17.61098 -16.82042 -16.21915 -15.92720 -15.42087 -15.00657 -14.55587 -14.27676 -14.15345 -14.01391 -13.60412 -13.46522 -13.18027 -13.12638 -12.90079 -12.76213 -12.54996 -12.29956 -12.23209 -11.98989 -11.62789 -11.47449 -11.38439 -11.05310 -10.44270 -9.51671 -9.09606 -8.08115 -6.19664 0.53551 1.38267 1.41023 1.52220 1.71049 1.82574 2.43065 3.16773 3.23130 3.62568 3.95230 4.08326 4.15590 4.22730 4.48082 4.53187 4.59612 4.63455 4.69912 4.71356 4.80513 4.86900 5.03703 5.10770 5.19513 5.25232 5.27195 5.37069 5.46474 5.59567 5.73921 5.88452 6.32317 6.42529 6.88601 6.92037 6.93077 7.49103 8.94871 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.007487 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.796192 B = 3739.013202 C = 4629.560545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.229 3.771 4 H -0.012 1.012 5 C -0.515 4.515 6 H 0.041 0.959 7 C 0.016 3.984 8 N -0.913 5.913 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.676 5.676 14 C 0.184 3.816 15 H 0.083 0.917 16 C -0.159 4.159 17 C 0.199 3.801 18 N -0.493 5.493 19 C -0.063 4.063 20 C -0.065 4.065 21 C -0.061 4.061 22 O -0.222 6.222 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.032 0.968 27 H 0.072 0.928 28 H 0.262 0.738 29 H 0.338 0.662 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.210 0.790 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 10.151 9.780 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.122 3.878 4 H 0.005 0.995 5 C -0.554 4.554 6 H 0.059 0.941 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.204 1.204 13 N -0.310 5.310 14 C 0.071 3.929 15 H 0.101 0.899 16 C -0.218 4.218 17 C -0.009 4.009 18 N -0.223 5.223 19 C -0.201 4.201 20 C -0.118 4.118 21 C -0.118 4.118 22 O -0.109 6.109 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.158 0.842 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.227 0.773 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.784 9.575 9.886 14.273 hybrid contribution 0.796 0.315 -0.864 1.217 sum -2.987 9.889 9.022 13.715 Atomic orbital electron populations 1.21757 0.96024 1.01274 1.00647 1.21584 0.94442 0.98641 1.01206 1.18988 0.93863 0.90817 0.84137 0.99471 1.21450 0.92927 1.36993 1.04046 0.94116 1.25574 1.01920 0.95224 0.95541 1.69975 1.35978 1.39603 1.09802 0.85624 0.81229 0.77778 0.77681 1.20248 1.20429 1.20360 1.60208 1.37614 1.01035 1.32141 1.19595 0.98599 0.88943 0.85729 0.89873 1.22330 0.94845 1.02827 1.01829 1.26472 0.90028 0.86546 0.97841 1.70325 1.26487 1.26591 0.98858 1.23633 1.00554 0.94501 1.01413 1.24374 1.03762 1.03298 0.80353 1.20464 0.99645 0.92025 0.99626 1.84388 1.54719 1.43037 1.28790 0.92655 0.93756 0.92474 0.94936 0.90948 0.92887 0.84177 0.91194 0.90733 0.91170 0.77344 0.88960 0.89906 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 9.63 71.98 0.69 -4.49 16 2 C -0.12 -5.66 5.37 30.59 0.16 -5.50 16 3 C 0.23 11.43 1.83 44.17 0.08 11.52 16 4 H -0.01 -0.65 7.19 -2.39 -0.02 -0.67 16 5 C -0.52 -29.06 8.46 25.60 0.22 -28.84 16 6 H 0.04 2.41 7.81 -2.91 -0.02 2.38 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.91 -51.84 11.29 21.45 0.24 -51.59 16 9 Si 0.95 44.64 29.54 68.60 2.03 46.66 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.68 -29.74 6.02 -477.19 -2.87 -32.61 16 14 C 0.18 7.29 2.93 44.16 0.13 7.42 16 15 H 0.08 3.66 7.60 -2.39 -0.02 3.64 16 16 C -0.16 -5.09 9.14 71.98 0.66 -4.43 16 17 C 0.20 7.69 7.19 88.34 0.64 8.33 16 18 N -0.49 -18.32 11.28 -303.83 -3.43 -21.75 16 19 C -0.06 -1.85 11.80 83.39 0.98 -0.87 16 20 C -0.07 -1.83 7.39 24.79 0.18 -1.65 16 21 C -0.06 -0.98 10.43 71.24 0.74 -0.23 16 22 O -0.22 -8.08 10.78 -3.75 -0.04 -8.12 16 23 H 0.05 1.85 6.67 -2.39 -0.02 1.83 16 24 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.07 3.85 5.94 -2.39 -0.01 3.83 16 28 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.34 13.72 6.34 -89.69 -0.57 13.15 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.28 7.46 -2.39 -0.02 2.26 16 33 H 0.21 4.37 8.06 -2.91 -0.02 4.34 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -65.65 300.20 1.36 -64.29 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.50 Total: 20.53 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 4.94 Total: -17.41 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -6.05 Total: -105.96 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.04 Total: -8.12 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -65.65 1.36 -64.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231742366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.416 kcal (2) G-P(sol) polarization free energy of solvation -65.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds