Wall clock time and date at job start Sun Mar 29 2020 22:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47111 * 2 1 4 4 H 1.08998 * 109.47205 * 56.16867 * 3 2 1 5 5 C 1.50701 * 109.46765 * 176.17000 * 3 2 1 6 6 H 1.08007 * 119.99722 * 114.55920 * 5 3 2 7 7 C 1.37878 * 120.00038 * 294.55042 * 5 3 2 8 8 N 1.31511 * 119.99828 * 349.69962 * 7 5 3 9 9 Si 1.86803 * 119.99695 * 169.70183 * 7 5 3 10 10 H 1.48501 * 109.47079 * 60.00411 * 9 7 5 11 11 H 1.48505 * 109.46647 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47071 * 300.00016 * 9 7 5 13 13 N 1.46895 * 109.46893 * 296.16742 * 3 2 1 14 14 C 1.46901 * 110.99847 * 156.12937 * 13 3 2 15 15 H 1.09000 * 109.47284 * 32.99936 * 14 13 3 16 16 C 1.53006 * 109.47096 * 272.99888 * 14 13 3 17 17 C 1.50706 * 109.47238 * 153.00267 * 14 13 3 18 18 N 1.30249 * 125.61839 * 44.69203 * 17 14 13 19 19 C 1.34485 * 108.69891 * 179.83885 * 18 17 14 20 20 C 1.34329 * 107.66470 * 0.42166 * 19 18 17 21 21 C 1.50705 * 126.43793 * 179.76598 * 20 19 18 22 22 O 1.33965 * 125.61403 * 224.99424 * 17 14 13 23 23 H 1.09000 * 109.46802 * 185.20484 * 1 2 3 24 24 H 1.09010 * 109.46613 * 305.20018 * 1 2 3 25 25 H 1.09003 * 109.47118 * 65.19659 * 1 2 3 26 26 H 1.09001 * 109.47016 * 240.00469 * 2 1 3 27 27 H 1.09000 * 109.47349 * 120.00220 * 2 1 3 28 28 H 0.96999 * 120.00167 * 354.42534 * 8 7 5 29 29 H 1.00899 * 111.00270 * 280.07831 * 13 3 2 30 30 H 1.08998 * 109.47239 * 305.26159 * 16 14 13 31 31 H 1.09005 * 109.46728 * 65.25675 * 16 14 13 32 32 H 1.08997 * 109.47281 * 185.25549 * 16 14 13 33 33 H 1.07997 * 126.16703 * 180.16891 * 19 18 17 34 34 H 1.08998 * 109.47055 * 269.97349 * 21 20 19 35 35 H 1.08996 * 109.47350 * 29.98051 * 21 20 19 36 36 H 1.09005 * 109.46438 * 149.97261 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9758 0.8536 5 6 3.5440 1.4435 0.0949 6 1 4.1368 1.8136 -0.7286 7 6 4.1633 0.9721 1.2330 8 7 3.4526 0.7124 2.3087 9 14 6.0117 0.7025 1.2471 10 1 6.7016 1.9880 0.9695 11 1 6.4278 0.1956 2.5795 12 1 6.3751 -0.2897 0.2038 13 7 1.6274 2.1077 -1.2430 14 6 1.5778 3.5655 -1.0685 15 1 2.3494 3.8734 -0.3629 16 6 0.2036 3.9682 -0.5296 17 6 1.8137 4.2386 -2.3961 18 7 1.2686 3.8953 -3.5282 19 6 1.7125 4.7244 -4.4895 20 6 2.5628 5.5931 -3.9178 21 6 3.3088 6.7036 -4.6117 22 8 2.6228 5.2852 -2.6073 23 1 -0.3633 -1.0234 0.0932 24 1 -0.3633 0.5925 0.8398 25 1 -0.3633 0.4311 -0.9329 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.5071 0.9280 2.3290 29 1 2.2359 1.8556 -2.0073 30 1 -0.5731 3.5790 -1.1877 31 1 0.0713 3.5573 0.4713 32 1 0.1339 5.0552 -0.4882 33 1 1.4383 4.6943 -5.5336 34 1 4.2697 6.3302 -4.9654 35 1 2.7234 7.0606 -5.4590 36 1 3.4726 7.5235 -3.9122 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231742369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:31 Heat of formation + Delta-G solvation = 5.250314 kcal Electronic energy + Delta-G solvation = -17306.886621 eV Core-core repulsion = 14599.204513 eV Total energy + Delta-G solvation = -2707.682109 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.07157 -37.02884 -34.49709 -33.81137 -32.03506 -31.36243 -29.08217 -26.63840 -25.49577 -23.39710 -22.72885 -21.51481 -20.14989 -19.75992 -17.24940 -16.66675 -16.40165 -15.25534 -14.65710 -13.99505 -13.76657 -13.55868 -13.36935 -13.14767 -13.00094 -12.34325 -12.34090 -12.15009 -12.08949 -11.39502 -11.16001 -11.02942 -10.96243 -10.71967 -10.41152 -10.18207 -10.14725 -9.87040 -9.74884 -8.98279 -8.44568 -8.36077 -7.39498 -6.38356 -4.15718 1.65020 2.84157 2.96441 3.39660 3.41882 3.60007 4.33964 4.48792 4.83236 5.00202 5.10207 5.27788 5.29730 5.38612 5.52688 5.68523 5.78744 6.01924 6.11015 6.20765 6.24476 6.28094 6.33769 6.48260 6.51259 6.68020 6.81942 6.95828 7.14935 7.29549 7.52660 7.86329 7.94253 8.07859 8.35853 8.52084 8.76869 9.56091 10.94168 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021945 B = 0.007531 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.613603 B = 3716.979044 C = 4568.914619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.201 3.799 4 H 0.030 0.970 5 C -0.633 4.633 6 H 0.046 0.954 7 C 0.032 3.968 8 N -0.902 5.902 9 Si 1.057 2.943 10 H -0.290 1.290 11 H -0.281 1.281 12 H -0.288 1.288 13 N -0.660 5.660 14 C 0.185 3.815 15 H 0.075 0.925 16 C -0.129 4.129 17 C 0.203 3.797 18 N -0.467 5.467 19 C -0.046 4.046 20 C -0.066 4.066 21 C -0.064 4.064 22 O -0.203 6.203 23 H 0.029 0.971 24 H 0.038 0.962 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.272 0.728 29 H 0.337 0.663 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.178 0.822 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.688 9.077 -9.855 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.093 3.907 4 H 0.048 0.952 5 C -0.672 4.672 6 H 0.065 0.935 7 C -0.174 4.174 8 N -0.537 5.537 9 Si 0.886 3.114 10 H -0.216 1.216 11 H -0.207 1.207 12 H -0.214 1.214 13 N -0.293 5.293 14 C 0.074 3.926 15 H 0.093 0.907 16 C -0.188 4.188 17 C -0.004 4.004 18 N -0.195 5.195 19 C -0.185 4.185 20 C -0.120 4.120 21 C -0.121 4.121 22 O -0.089 6.089 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.196 0.804 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.516 7.939 -8.821 12.131 hybrid contribution 0.331 1.340 -1.049 1.733 sum -2.185 9.279 -9.870 13.722 Atomic orbital electron populations 1.21712 0.98037 0.98787 1.01124 1.21499 0.93060 0.98900 1.00916 1.19384 0.93655 0.90835 0.86811 0.95188 1.22605 0.92208 1.48093 1.04282 0.93542 1.25662 1.06320 0.93391 0.92073 1.70784 1.10190 1.44009 1.28680 0.83723 0.75041 0.76532 0.76137 1.21636 1.20669 1.21404 1.61032 1.57135 1.01921 1.09170 1.19859 0.98575 0.89483 0.84728 0.90694 1.21766 0.95648 0.99555 1.01807 1.26803 0.89174 0.86373 0.98056 1.70479 1.24879 1.25843 0.98314 1.23105 0.99986 0.94888 1.00525 1.23396 1.04176 1.02684 0.81727 1.20194 0.99360 0.93544 0.98954 1.84424 1.54550 1.42993 1.26981 0.95228 0.94268 0.92568 0.93807 0.91877 0.91656 0.84508 0.91395 0.91221 0.93293 0.80444 0.90096 0.89342 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.73 37.16 0.36 -2.38 16 2 C -0.11 -2.42 5.37 -26.73 -0.14 -2.57 16 3 C 0.20 4.84 1.43 -68.86 -0.10 4.74 16 4 H 0.03 0.77 6.52 -51.93 -0.34 0.43 16 5 C -0.63 -17.09 8.15 -34.44 -0.28 -17.37 16 6 H 0.05 1.28 7.74 -52.48 -0.41 0.88 16 7 C 0.03 0.88 5.16 -17.82 -0.09 0.79 16 8 N -0.90 -26.06 12.82 55.43 0.71 -25.35 16 9 Si 1.06 24.79 29.92 -169.99 -5.09 19.71 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.66 -14.13 5.53 -102.16 -0.57 -14.69 16 14 C 0.18 3.63 2.96 -68.86 -0.20 3.43 16 15 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 16 C -0.13 -2.20 9.38 37.16 0.35 -1.85 16 17 C 0.20 3.85 6.82 -12.95 -0.09 3.76 16 18 N -0.47 -8.63 11.27 -11.10 -0.13 -8.76 16 19 C -0.05 -0.69 11.80 -17.77 -0.21 -0.90 16 20 C -0.07 -0.96 7.39 -35.69 -0.26 -1.22 16 21 C -0.06 -0.58 10.43 36.01 0.38 -0.20 16 22 O -0.20 -3.63 10.78 5.36 0.06 -3.57 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.60 6.59 -51.93 -0.34 1.25 16 28 H 0.27 7.81 6.46 -40.82 -0.26 7.55 16 29 H 0.34 7.59 8.01 -39.29 -0.31 7.27 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.19 7.63 -51.93 -0.40 0.79 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 301.85 15.07 4.55 4.55 Total: -1.00 -29.86 301.85 -6.22 -36.08 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.46 Total: 5.82 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.29 Total: -13.79 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.02 Total: -48.80 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: 0.06 Total: -3.57 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.09 Total: 19.71 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.86 -6.22 -36.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231742369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.329 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds