Wall clock time and date at job start Sun Mar 29 2020 22:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47111 * 2 1 4 4 H 1.08998 * 109.47205 * 56.16867 * 3 2 1 5 5 C 1.50701 * 109.46765 * 176.17000 * 3 2 1 6 6 H 1.08007 * 119.99722 * 114.55920 * 5 3 2 7 7 C 1.37878 * 120.00038 * 294.55042 * 5 3 2 8 8 N 1.31511 * 119.99828 * 349.69962 * 7 5 3 9 9 Si 1.86803 * 119.99695 * 169.70183 * 7 5 3 10 10 H 1.48501 * 109.47079 * 60.00411 * 9 7 5 11 11 H 1.48505 * 109.46647 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47071 * 300.00016 * 9 7 5 13 13 N 1.46895 * 109.46893 * 296.16742 * 3 2 1 14 14 C 1.46901 * 110.99847 * 156.12937 * 13 3 2 15 15 H 1.09000 * 109.47284 * 32.99936 * 14 13 3 16 16 C 1.53006 * 109.47096 * 272.99888 * 14 13 3 17 17 C 1.50706 * 109.47238 * 153.00267 * 14 13 3 18 18 N 1.30249 * 125.61839 * 44.69203 * 17 14 13 19 19 C 1.34485 * 108.69891 * 179.83885 * 18 17 14 20 20 C 1.34329 * 107.66470 * 0.42166 * 19 18 17 21 21 C 1.50705 * 126.43793 * 179.76598 * 20 19 18 22 22 O 1.33965 * 125.61403 * 224.99424 * 17 14 13 23 23 H 1.09000 * 109.46802 * 185.20484 * 1 2 3 24 24 H 1.09010 * 109.46613 * 305.20018 * 1 2 3 25 25 H 1.09003 * 109.47118 * 65.19659 * 1 2 3 26 26 H 1.09001 * 109.47016 * 240.00469 * 2 1 3 27 27 H 1.09000 * 109.47349 * 120.00220 * 2 1 3 28 28 H 0.96999 * 120.00167 * 354.42534 * 8 7 5 29 29 H 1.00899 * 111.00270 * 280.07831 * 13 3 2 30 30 H 1.08998 * 109.47239 * 305.26159 * 16 14 13 31 31 H 1.09005 * 109.46728 * 65.25675 * 16 14 13 32 32 H 1.08997 * 109.47281 * 185.25549 * 16 14 13 33 33 H 1.07997 * 126.16703 * 180.16891 * 19 18 17 34 34 H 1.08998 * 109.47055 * 269.97349 * 21 20 19 35 35 H 1.08996 * 109.47350 * 29.98051 * 21 20 19 36 36 H 1.09005 * 109.46438 * 149.97261 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9758 0.8536 5 6 3.5440 1.4435 0.0949 6 1 4.1368 1.8136 -0.7286 7 6 4.1633 0.9721 1.2330 8 7 3.4526 0.7124 2.3087 9 14 6.0117 0.7025 1.2471 10 1 6.7016 1.9880 0.9695 11 1 6.4278 0.1956 2.5795 12 1 6.3751 -0.2897 0.2038 13 7 1.6274 2.1077 -1.2430 14 6 1.5778 3.5655 -1.0685 15 1 2.3494 3.8734 -0.3629 16 6 0.2036 3.9682 -0.5296 17 6 1.8137 4.2386 -2.3961 18 7 1.2686 3.8953 -3.5282 19 6 1.7125 4.7244 -4.4895 20 6 2.5628 5.5931 -3.9178 21 6 3.3088 6.7036 -4.6117 22 8 2.6228 5.2852 -2.6073 23 1 -0.3633 -1.0234 0.0932 24 1 -0.3633 0.5925 0.8398 25 1 -0.3633 0.4311 -0.9329 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.5071 0.9280 2.3290 29 1 2.2359 1.8556 -2.0073 30 1 -0.5731 3.5790 -1.1877 31 1 0.0713 3.5573 0.4713 32 1 0.1339 5.0552 -0.4882 33 1 1.4383 4.6943 -5.5336 34 1 4.2697 6.3302 -4.9654 35 1 2.7234 7.0606 -5.4590 36 1 3.4726 7.5235 -3.9122 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231742369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:31 Heat of formation + Delta-G solvation = -16.048876 kcal Electronic energy + Delta-G solvation = -17307.810224 eV Core-core repulsion = 14599.204513 eV Total energy + Delta-G solvation = -2708.605711 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.35686 -38.79797 -35.96751 -35.38879 -33.60616 -32.83137 -30.69948 -27.84700 -27.33050 -25.07719 -24.32065 -22.78284 -21.69413 -21.51920 -19.20770 -18.07960 -17.73592 -16.93264 -16.03557 -15.68585 -15.45792 -15.15548 -14.71415 -14.34552 -14.15165 -14.00149 -13.81591 -13.61589 -13.23101 -12.98500 -12.87309 -12.60544 -12.45826 -12.34274 -12.29271 -11.99635 -11.68240 -11.59514 -11.48982 -10.95167 -10.47295 -9.63404 -9.27116 -8.54871 -6.35822 0.40122 1.49289 1.54705 1.60146 1.69446 1.74907 2.53149 3.04455 3.13967 3.39738 3.86259 4.06074 4.13484 4.24056 4.43899 4.45498 4.54778 4.59250 4.65746 4.69184 4.79424 4.87016 4.94603 5.04183 5.16164 5.18314 5.24013 5.32918 5.39174 5.45724 5.65820 5.89618 5.92528 6.36125 6.52875 6.61736 6.78372 7.42693 8.74126 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021945 B = 0.007531 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.613603 B = 3716.979044 C = 4568.914619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 C 0.208 3.792 4 H 0.012 0.988 5 C -0.642 4.642 6 H 0.034 0.966 7 C -0.013 4.013 8 N -0.922 5.922 9 Si 1.100 2.900 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.275 1.275 13 N -0.649 5.649 14 C 0.186 3.814 15 H 0.047 0.953 16 C -0.119 4.119 17 C 0.174 3.826 18 N -0.481 5.481 19 C -0.063 4.063 20 C -0.056 4.056 21 C -0.063 4.063 22 O -0.221 6.221 23 H 0.050 0.950 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.263 0.737 29 H 0.330 0.670 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.214 0.786 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 10.074 -11.642 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.138 4.138 3 C 0.099 3.901 4 H 0.030 0.970 5 C -0.680 4.680 6 H 0.053 0.947 7 C -0.214 4.214 8 N -0.558 5.558 9 Si 0.923 3.077 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.201 1.201 13 N -0.280 5.280 14 C 0.075 3.925 15 H 0.065 0.935 16 C -0.177 4.177 17 C -0.033 4.033 18 N -0.211 5.211 19 C -0.201 4.201 20 C -0.109 4.109 21 C -0.119 4.119 22 O -0.108 6.108 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.230 0.770 34 H 0.114 0.886 35 H 0.140 0.860 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.381 8.953 -10.617 14.091 hybrid contribution 0.295 1.128 -0.611 1.317 sum -2.086 10.082 -11.228 15.233 Atomic orbital electron populations 1.21575 0.95170 1.00241 1.01406 1.21366 0.95569 0.97622 0.99278 1.19206 0.92061 0.91539 0.87293 0.97049 1.22891 0.93883 1.47552 1.03723 0.94729 1.26886 1.09782 0.92987 0.91794 1.70884 1.09866 1.45587 1.29449 0.83148 0.70881 0.77232 0.76400 1.20350 1.20623 1.20077 1.61008 1.56175 1.03278 1.07551 1.19753 0.99113 0.88325 0.85292 0.93465 1.21678 0.94031 1.00806 1.01203 1.26378 0.91172 0.87883 0.97858 1.70415 1.25120 1.26685 0.98855 1.23714 1.00305 0.94532 1.01544 1.24472 1.03166 1.02964 0.80323 1.20511 0.99932 0.91913 0.99583 1.84415 1.54496 1.42818 1.29079 0.93138 0.94166 0.92053 0.94348 0.94457 0.92705 0.85380 0.91229 0.91760 0.91323 0.76969 0.88631 0.86026 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 9.73 71.98 0.70 -4.20 16 2 C -0.10 -4.66 5.37 30.60 0.16 -4.50 16 3 C 0.21 10.26 1.43 44.17 0.06 10.32 16 4 H 0.01 0.62 6.52 -2.39 -0.02 0.60 16 5 C -0.64 -35.46 8.15 25.60 0.21 -35.25 16 6 H 0.03 1.95 7.74 -2.91 -0.02 1.93 16 7 C -0.01 -0.74 5.16 84.66 0.44 -0.31 16 8 N -0.92 -54.38 12.82 21.45 0.27 -54.11 16 9 Si 1.10 50.15 29.92 68.60 2.05 52.20 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 13 N -0.65 -28.32 5.53 -477.14 -2.64 -30.96 16 14 C 0.19 7.49 2.96 44.17 0.13 7.62 16 15 H 0.05 2.13 7.58 -2.39 -0.02 2.12 16 16 C -0.12 -4.05 9.38 71.98 0.68 -3.38 16 17 C 0.17 6.58 6.82 88.35 0.60 7.18 16 18 N -0.48 -17.38 11.27 -303.83 -3.43 -20.80 16 19 C -0.06 -1.74 11.80 83.39 0.98 -0.76 16 20 C -0.06 -1.50 7.39 24.79 0.18 -1.32 16 21 C -0.06 -0.92 10.43 71.24 0.74 -0.18 16 22 O -0.22 -7.81 10.78 -3.73 -0.04 -7.85 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.04 1.52 8.14 -2.38 -0.02 1.51 16 25 H 0.06 2.30 7.87 -2.39 -0.02 2.29 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.92 6.59 -2.39 -0.02 1.90 16 28 H 0.26 15.57 6.46 -92.71 -0.60 14.97 16 29 H 0.33 15.14 8.01 -89.70 -0.72 14.42 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 2.22 7.63 -2.38 -0.02 2.21 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.21 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -65.32 301.85 1.63 -63.70 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.51 Total: 22.58 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 4.89 Total: -24.77 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -5.79 Total: -105.87 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.04 Total: -7.85 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.05 Total: 52.20 kcal Total: -65.32 1.63 -63.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231742369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.647 kcal (2) G-P(sol) polarization free energy of solvation -65.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds