Wall clock time and date at job start Sun Mar 29 2020 22:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47506 * 2 1 4 4 C 1.52996 * 109.47292 * 120.00575 * 2 1 3 5 5 C 1.53002 * 109.47340 * 64.99459 * 4 2 1 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2 7 7 N 1.29949 * 126.28516 * 90.02698 * 6 5 4 8 8 O 1.21303 * 110.24828 * 179.97438 * 7 6 5 9 9 C 1.33639 * 109.81167 * 0.02562 * 8 7 6 10 10 C 1.50706 * 126.55166 * 179.97438 * 9 8 7 11 11 C 1.52991 * 109.47046 * 269.97597 * 10 9 8 12 12 C 1.50706 * 109.47046 * 179.97438 * 11 10 9 13 13 H 1.07992 * 119.99562 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99624 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00416 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99598 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46974 * 89.99864 * 16 14 12 18 18 H 1.48493 * 109.47284 * 209.99797 * 16 14 12 19 19 H 1.48501 * 109.47184 * 329.99831 * 16 14 12 20 20 N 1.31134 * 106.89726 * 359.76539 * 9 8 7 21 21 H 1.09000 * 109.47145 * 299.99710 * 1 2 3 22 22 H 1.09002 * 109.47139 * 59.99820 * 1 2 3 23 23 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46822 * 239.99976 * 2 1 3 25 25 H 1.08998 * 109.47407 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47069 * 300.00223 * 3 2 1 27 27 H 1.09000 * 109.46682 * 60.00006 * 3 2 1 28 28 H 1.09004 * 109.46785 * 304.99767 * 4 2 1 29 29 H 1.09004 * 109.47694 * 184.99866 * 4 2 1 30 30 H 1.09000 * 109.46497 * 60.00561 * 5 4 2 31 31 H 1.09000 * 109.47312 * 300.00340 * 5 4 2 32 32 H 1.09002 * 109.46756 * 29.97587 * 10 9 8 33 33 H 1.09001 * 109.47141 * 149.96983 * 10 9 8 34 34 H 1.09002 * 109.47334 * 299.99636 * 11 10 9 35 35 H 1.09001 * 109.47652 * 59.99698 * 11 10 9 36 36 H 0.97002 * 120.00258 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6352 -2.1956 1.1878 6 6 2.1370 -2.9059 2.4186 7 7 1.4977 -3.0435 3.5415 8 8 2.1723 -3.6654 4.3351 9 6 3.3415 -3.9929 3.7770 10 6 4.4610 -4.7652 4.4264 11 6 5.4140 -3.7926 5.1238 12 6 6.5331 -4.5649 5.7737 13 1 6.5613 -5.6417 5.6972 14 6 7.5201 -3.8966 6.4667 15 7 7.4853 -2.5853 6.5601 16 14 8.9068 -4.8540 7.2728 17 1 10.0288 -5.0039 6.3116 18 1 9.3797 -4.1223 8.4753 19 1 8.4144 -6.1968 7.6722 20 7 3.3269 -3.5178 2.5549 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -0.2618 2.1369 29 1 3.1263 -0.6445 1.2951 30 1 2.0698 -2.6550 0.3001 31 1 0.5488 -2.2725 1.1419 32 1 4.0471 -5.4572 5.1599 33 1 5.0053 -5.3248 3.6657 34 1 5.8278 -3.1005 4.3903 35 1 4.8696 -3.2330 5.8845 36 1 8.1800 -2.1152 7.0474 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232620945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:24 Heat of formation + Delta-G solvation = 25.115132 kcal Electronic energy + Delta-G solvation = -16356.785665 eV Core-core repulsion = 13649.964959 eV Total energy + Delta-G solvation = -2706.820706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.07697 -37.36339 -35.45085 -34.47207 -32.65929 -30.89076 -29.75574 -27.34255 -25.83354 -24.88169 -23.02596 -21.78671 -20.35163 -20.03722 -17.60671 -16.94018 -16.37202 -15.45741 -14.89429 -14.54726 -14.34353 -13.91987 -13.58690 -13.30954 -12.70061 -12.45953 -12.41892 -12.10940 -11.99067 -11.57065 -11.48392 -11.26962 -11.00011 -10.86668 -10.78609 -10.71298 -10.59852 -10.51137 -10.12088 -9.96946 -9.32700 -9.14386 -8.45270 -6.09531 -4.14307 1.64051 2.66820 3.28864 3.34664 3.37007 3.41477 3.98293 4.37624 4.43755 4.70304 4.75166 4.81147 5.19710 5.27105 5.29384 5.40280 5.47385 5.52737 5.63340 5.71819 5.75061 5.89240 5.91143 6.04568 6.05936 6.12898 6.22022 6.25691 6.29657 6.46886 6.63604 7.49161 7.56314 7.85997 8.21509 8.63882 8.90977 9.50633 11.01734 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034426 B = 0.004302 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.147357 B = 6507.740883 C = 7058.852470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.111 4.111 5 C -0.025 4.025 6 C 0.165 3.835 7 N -0.401 5.401 8 O 0.066 5.934 9 C 0.213 3.787 10 C -0.028 4.028 11 C 0.028 3.972 12 C -0.526 4.526 13 H 0.062 0.938 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 N -0.496 5.496 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.026 0.974 35 H 0.024 0.976 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.530 2.804 -11.252 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.150 4.150 5 C -0.064 4.064 6 C -0.108 4.108 7 N -0.112 5.112 8 O 0.010 5.990 9 C -0.006 4.006 10 C -0.067 4.067 11 C -0.011 4.011 12 C -0.564 4.564 13 H 0.080 0.920 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.197 1.197 20 N -0.230 5.230 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.086 3.342 -11.438 16.973 hybrid contribution 0.914 -0.440 0.629 1.194 sum -11.172 2.901 -10.810 15.814 Atomic orbital electron populations 1.21919 0.95298 1.01863 1.01720 1.21099 0.95826 0.96354 0.98037 1.21835 1.01275 0.95753 1.01658 1.21638 1.02001 0.92979 0.98361 1.19968 1.01086 0.94381 0.90915 1.25784 0.88779 0.99816 0.96454 1.74537 1.19408 1.15077 1.02189 1.85262 1.24225 1.51836 1.37646 1.29630 0.88758 0.94608 0.87624 1.20745 0.88839 0.97613 0.99553 1.19156 0.92685 0.93849 0.95364 1.21074 1.08167 0.93477 1.33697 0.92022 1.25012 0.98145 0.94891 0.96189 1.69966 1.34250 1.06934 1.41821 0.86505 0.82138 0.79937 0.78913 1.20544 1.21178 1.19689 1.71925 1.19037 1.15651 1.16419 0.92600 0.92792 0.92456 0.90913 0.92454 0.92724 0.92659 0.91555 0.90970 0.89003 0.89409 0.89130 0.88245 0.95544 0.95812 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.95 37.16 0.33 -0.93 16 2 C -0.09 -0.89 2.92 -90.62 -0.26 -1.15 16 3 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 4 C -0.11 -1.33 4.66 -26.73 -0.12 -1.46 16 5 C -0.02 -0.32 5.60 -27.88 -0.16 -0.47 16 6 C 0.16 2.86 7.47 -156.37 -1.17 1.69 16 7 N -0.40 -7.46 12.16 30.90 0.38 -7.08 16 8 O 0.07 1.27 11.31 18.11 0.20 1.47 16 9 C 0.21 4.14 7.77 -13.05 -0.10 4.04 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.03 0.69 4.95 -27.88 -0.14 0.55 16 12 C -0.53 -14.10 9.11 -34.44 -0.31 -14.41 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 16 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 N -0.50 -9.64 11.55 -9.87 -0.11 -9.75 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 0.98 6.57 -51.93 -0.34 0.64 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -29.88 306.05 -6.78 -36.65 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -5.72 Total: -4.07 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -1.85 Total: -12.27 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 1.00 Total: -42.28 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.20 Total: 1.47 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.88 -6.78 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232620945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.767 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds