Wall clock time and date at job start Sun Mar 29 2020 22:22:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53002 * 109.47506 * 2 1
4 4 C 1.52996 * 109.47292 * 120.00575 * 2 1 3
5 5 C 1.53002 * 109.47340 * 64.99459 * 4 2 1
6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2
7 7 N 1.29949 * 126.28516 * 90.02698 * 6 5 4
8 8 O 1.21303 * 110.24828 * 179.97438 * 7 6 5
9 9 C 1.33639 * 109.81167 * 0.02562 * 8 7 6
10 10 C 1.50706 * 126.55166 * 179.97438 * 9 8 7
11 11 C 1.52991 * 109.47046 * 269.97597 * 10 9 8
12 12 C 1.50706 * 109.47046 * 179.97438 * 11 10 9
13 13 H 1.07992 * 119.99562 * 359.97438 * 12 11 10
14 14 C 1.37882 * 119.99624 * 180.02562 * 12 11 10
15 15 N 1.31508 * 120.00416 * 359.97438 * 14 12 11
16 16 Si 1.86798 * 119.99598 * 179.97438 * 14 12 11
17 17 H 1.48504 * 109.46974 * 89.99864 * 16 14 12
18 18 H 1.48493 * 109.47284 * 209.99797 * 16 14 12
19 19 H 1.48501 * 109.47184 * 329.99831 * 16 14 12
20 20 N 1.31134 * 106.89726 * 359.76539 * 9 8 7
21 21 H 1.09000 * 109.47145 * 299.99710 * 1 2 3
22 22 H 1.09002 * 109.47139 * 59.99820 * 1 2 3
23 23 H 1.08997 * 109.47474 * 179.97438 * 1 2 3
24 24 H 1.09006 * 109.46822 * 239.99976 * 2 1 3
25 25 H 1.08998 * 109.47407 * 179.97438 * 3 2 1
26 26 H 1.09002 * 109.47069 * 300.00223 * 3 2 1
27 27 H 1.09000 * 109.46682 * 60.00006 * 3 2 1
28 28 H 1.09004 * 109.46785 * 304.99767 * 4 2 1
29 29 H 1.09004 * 109.47694 * 184.99866 * 4 2 1
30 30 H 1.09000 * 109.46497 * 60.00561 * 5 4 2
31 31 H 1.09000 * 109.47312 * 300.00340 * 5 4 2
32 32 H 1.09002 * 109.46756 * 29.97587 * 10 9 8
33 33 H 1.09001 * 109.47141 * 149.96983 * 10 9 8
34 34 H 1.09002 * 109.47334 * 299.99636 * 11 10 9
35 35 H 1.09001 * 109.47652 * 59.99698 * 11 10 9
36 36 H 0.97002 * 120.00258 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2491
5 6 1.6352 -2.1956 1.1878
6 6 2.1370 -2.9059 2.4186
7 7 1.4977 -3.0435 3.5415
8 8 2.1723 -3.6654 4.3351
9 6 3.3415 -3.9929 3.7770
10 6 4.4610 -4.7652 4.4264
11 6 5.4140 -3.7926 5.1238
12 6 6.5331 -4.5649 5.7737
13 1 6.5613 -5.6417 5.6972
14 6 7.5201 -3.8966 6.4667
15 7 7.4853 -2.5853 6.5601
16 14 8.9068 -4.8540 7.2728
17 1 10.0288 -5.0039 6.3116
18 1 9.3797 -4.1223 8.4753
19 1 8.4144 -6.1968 7.6722
20 7 3.3269 -3.5178 2.5549
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3634 -1.0276 -0.0005
24 1 1.8933 -0.5139 -0.8900
25 1 3.1300 1.4425 0.0005
26 1 1.6767 1.9563 -0.8900
27 1 1.6767 1.9563 0.8900
28 1 1.6054 -0.2618 2.1369
29 1 3.1263 -0.6445 1.2951
30 1 2.0698 -2.6550 0.3001
31 1 0.5488 -2.2725 1.1419
32 1 4.0471 -5.4572 5.1599
33 1 5.0053 -5.3248 3.6657
34 1 5.8278 -3.1005 4.3903
35 1 4.8696 -3.2330 5.8845
36 1 8.1800 -2.1152 7.0474
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000232620945.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:22:24
Heat of formation + Delta-G solvation = 7.250350 kcal
Electronic energy + Delta-G solvation = -16357.560340 eV
Core-core repulsion = 13649.964959 eV
Total energy + Delta-G solvation = -2707.595381 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-46.54941 -38.32283 -36.90485 -36.12858 -34.44145 -32.37027 -31.14079 -28.02331
-27.74129 -26.00556 -24.63235 -23.44145 -21.78284 -20.91636 -19.13944 -18.58847
-18.20290 -16.52026 -16.38090 -15.97129 -15.70770 -15.12066 -14.86050 -14.49725
-14.32291 -13.71193 -13.59177 -13.35145 -13.27170 -12.94922 -12.81268 -12.65506
-12.42590 -12.34861 -12.07893 -11.95626 -11.88778 -11.61324 -11.55841 -11.50076
-11.34232 -10.72646 -10.56907 -8.20445 -6.32717 0.13006 1.22061 1.46483
1.47381 1.58570 1.87583 2.43908 2.70140 3.06862 3.15024 3.80833
3.87568 3.95770 4.12707 4.27335 4.39931 4.50558 4.52725 4.53727
4.71219 4.79269 4.84921 4.87685 4.96590 5.00120 5.02891 5.08011
5.10704 5.28347 5.42742 5.44671 5.49063 5.52537 5.77252 6.12802
6.82993 7.15105 7.37622 8.92062
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.034426 B = 0.004302 C = 0.003966
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 813.147357 B = 6507.740883 C = 7058.852470
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.089 4.089
3 C -0.149 4.149
4 C -0.107 4.107
5 C -0.024 4.024
6 C 0.169 3.831
7 N -0.412 5.412
8 O 0.056 5.944
9 C 0.207 3.793
10 C -0.014 4.014
11 C 0.034 3.966
12 C -0.539 4.539
13 H 0.079 0.921
14 C 0.000 4.000
15 N -0.936 5.936
16 Si 0.971 3.029
17 H -0.274 1.274
18 H -0.287 1.287
19 H -0.256 1.256
20 N -0.512 5.512
21 H 0.049 0.951
22 H 0.068 0.932
23 H 0.061 0.939
24 H 0.084 0.916
25 H 0.049 0.951
26 H 0.070 0.930
27 H 0.049 0.951
28 H 0.052 0.948
29 H 0.051 0.949
30 H 0.108 0.892
31 H 0.109 0.891
32 H 0.115 0.885
33 H 0.114 0.886
34 H -0.007 1.007
35 H -0.004 1.004
36 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.911 1.728 -12.218 17.151
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.108 4.108
3 C -0.206 4.206
4 C -0.145 4.145
5 C -0.062 4.062
6 C -0.104 4.104
7 N -0.126 5.126
8 O 0.003 5.997
9 C -0.013 4.013
10 C -0.053 4.053
11 C -0.005 4.005
12 C -0.577 4.577
13 H 0.097 0.903
14 C -0.198 4.198
15 N -0.576 5.576
16 Si 0.795 3.205
17 H -0.199 1.199
18 H -0.213 1.213
19 H -0.180 1.180
20 N -0.247 5.247
21 H 0.068 0.932
22 H 0.087 0.913
23 H 0.080 0.920
24 H 0.102 0.898
25 H 0.068 0.932
26 H 0.089 0.911
27 H 0.068 0.932
28 H 0.071 0.929
29 H 0.070 0.930
30 H 0.127 0.873
31 H 0.127 0.873
32 H 0.133 0.867
33 H 0.132 0.868
34 H 0.011 0.989
35 H 0.015 0.985
36 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -12.480 2.243 -12.399 17.734
hybrid contribution 0.989 -0.044 0.885 1.328
sum -11.491 2.199 -11.514 16.415
Atomic orbital electron populations
1.21914 0.94222 1.02347 1.02192 1.21078 0.96646 0.96213 0.96816
1.21849 1.00851 0.95688 1.02238 1.21601 1.00684 0.92837 0.99426
1.20247 1.02374 0.94190 0.89424 1.26581 0.87848 0.98716 0.97286
1.74532 1.19750 1.15647 1.02650 1.85244 1.24253 1.52163 1.38018
1.29566 0.88990 0.94810 0.87888 1.20517 0.88064 0.96523 1.00179
1.18946 0.93285 0.94125 0.94105 1.21572 1.08417 0.94501 1.33182
0.90293 1.26013 1.01105 0.95767 0.96951 1.70116 1.35442 1.08917
1.43077 0.85357 0.78609 0.78911 0.77631 1.19922 1.21311 1.17962
1.71943 1.20039 1.16078 1.16600 0.93190 0.91307 0.91964 0.89766
0.93192 0.91062 0.93179 0.92885 0.92975 0.87338 0.87315 0.86653
0.86761 0.98879 0.98532 0.92763
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.17 8.95 71.98 0.64 -1.53 16
2 C -0.09 -1.52 2.92 -10.80 -0.03 -1.55 16
3 C -0.15 -2.48 9.19 71.98 0.66 -1.82 16
4 C -0.11 -2.49 4.66 30.59 0.14 -2.35 16
5 C -0.02 -0.57 5.60 29.85 0.17 -0.40 16
6 C 0.17 5.75 7.47 138.47 1.03 6.79 16
7 N -0.41 -15.22 12.16 -60.32 -0.73 -15.95 16
8 O 0.06 2.14 11.31 74.86 0.85 2.99 16
9 C 0.21 8.02 7.77 88.38 0.69 8.71 16
10 C -0.01 -0.54 5.78 29.85 0.17 -0.37 16
11 C 0.03 1.71 4.95 29.85 0.15 1.86 16
12 C -0.54 -28.76 9.11 25.60 0.23 -28.53 16
13 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16
14 C 0.00 -0.02 5.46 84.66 0.46 0.44 16
15 N -0.94 -56.12 13.29 21.45 0.28 -55.83 16
16 Si 0.97 42.55 29.54 68.60 2.03 44.57 16
17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
18 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16
19 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16
20 N -0.51 -19.72 11.55 -303.19 -3.50 -23.22 16
21 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16
22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16
23 H 0.06 0.84 6.57 -2.39 -0.02 0.83 16
24 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16
25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16
26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16
28 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16
29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16
30 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16
31 H 0.11 2.18 6.57 -2.39 -0.02 2.16 16
32 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16
33 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16
34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16
35 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16
36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16
Total: -1.00 -64.43 306.05 4.29 -60.14
By element:
Atomic # 1 Polarization: 5.00 SS G_CDS: 1.04 Total: 6.05 kcal
Atomic # 6 Polarization: -23.07 SS G_CDS: 4.32 Total: -18.75 kcal
Atomic # 7 Polarization: -91.05 SS G_CDS: -3.95 Total: -95.01 kcal
Atomic # 8 Polarization: 2.14 SS G_CDS: 0.85 Total: 2.99 kcal
Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal
Total: -64.43 4.29 -60.14 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000232620945.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.390 kcal
(2) G-P(sol) polarization free energy of solvation -64.426 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.964 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.139 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.250 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds