Wall clock time and date at job start Sun Mar 29 2020 22:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47506 * 2 1 4 4 C 1.52996 * 109.47292 * 120.00575 * 2 1 3 5 5 C 1.53002 * 109.47340 * 64.99459 * 4 2 1 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2 7 7 N 1.29949 * 126.28516 * 90.02698 * 6 5 4 8 8 O 1.21303 * 110.24828 * 179.97438 * 7 6 5 9 9 C 1.33639 * 109.81167 * 0.02562 * 8 7 6 10 10 C 1.50706 * 126.55166 * 179.97438 * 9 8 7 11 11 C 1.52991 * 109.47046 * 269.97597 * 10 9 8 12 12 C 1.50706 * 109.47046 * 179.97438 * 11 10 9 13 13 H 1.07992 * 119.99562 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99624 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00416 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99598 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46974 * 89.99864 * 16 14 12 18 18 H 1.48493 * 109.47284 * 209.99797 * 16 14 12 19 19 H 1.48501 * 109.47184 * 329.99831 * 16 14 12 20 20 N 1.31134 * 106.89726 * 359.76539 * 9 8 7 21 21 H 1.09000 * 109.47145 * 299.99710 * 1 2 3 22 22 H 1.09002 * 109.47139 * 59.99820 * 1 2 3 23 23 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46822 * 239.99976 * 2 1 3 25 25 H 1.08998 * 109.47407 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47069 * 300.00223 * 3 2 1 27 27 H 1.09000 * 109.46682 * 60.00006 * 3 2 1 28 28 H 1.09004 * 109.46785 * 304.99767 * 4 2 1 29 29 H 1.09004 * 109.47694 * 184.99866 * 4 2 1 30 30 H 1.09000 * 109.46497 * 60.00561 * 5 4 2 31 31 H 1.09000 * 109.47312 * 300.00340 * 5 4 2 32 32 H 1.09002 * 109.46756 * 29.97587 * 10 9 8 33 33 H 1.09001 * 109.47141 * 149.96983 * 10 9 8 34 34 H 1.09002 * 109.47334 * 299.99636 * 11 10 9 35 35 H 1.09001 * 109.47652 * 59.99698 * 11 10 9 36 36 H 0.97002 * 120.00258 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6352 -2.1956 1.1878 6 6 2.1370 -2.9059 2.4186 7 7 1.4977 -3.0435 3.5415 8 8 2.1723 -3.6654 4.3351 9 6 3.3415 -3.9929 3.7770 10 6 4.4610 -4.7652 4.4264 11 6 5.4140 -3.7926 5.1238 12 6 6.5331 -4.5649 5.7737 13 1 6.5613 -5.6417 5.6972 14 6 7.5201 -3.8966 6.4667 15 7 7.4853 -2.5853 6.5601 16 14 8.9068 -4.8540 7.2728 17 1 10.0288 -5.0039 6.3116 18 1 9.3797 -4.1223 8.4753 19 1 8.4144 -6.1968 7.6722 20 7 3.3269 -3.5178 2.5549 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -0.2618 2.1369 29 1 3.1263 -0.6445 1.2951 30 1 2.0698 -2.6550 0.3001 31 1 0.5488 -2.2725 1.1419 32 1 4.0471 -5.4572 5.1599 33 1 5.0053 -5.3248 3.6657 34 1 5.8278 -3.1005 4.3903 35 1 4.8696 -3.2330 5.8845 36 1 8.1800 -2.1152 7.0474 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232620945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:24 Heat of formation + Delta-G solvation = 7.250350 kcal Electronic energy + Delta-G solvation = -16357.560340 eV Core-core repulsion = 13649.964959 eV Total energy + Delta-G solvation = -2707.595381 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.54941 -38.32283 -36.90485 -36.12858 -34.44145 -32.37027 -31.14079 -28.02331 -27.74129 -26.00556 -24.63235 -23.44145 -21.78284 -20.91636 -19.13944 -18.58847 -18.20290 -16.52026 -16.38090 -15.97129 -15.70770 -15.12066 -14.86050 -14.49725 -14.32291 -13.71193 -13.59177 -13.35145 -13.27170 -12.94922 -12.81268 -12.65506 -12.42590 -12.34861 -12.07893 -11.95626 -11.88778 -11.61324 -11.55841 -11.50076 -11.34232 -10.72646 -10.56907 -8.20445 -6.32717 0.13006 1.22061 1.46483 1.47381 1.58570 1.87583 2.43908 2.70140 3.06862 3.15024 3.80833 3.87568 3.95770 4.12707 4.27335 4.39931 4.50558 4.52725 4.53727 4.71219 4.79269 4.84921 4.87685 4.96590 5.00120 5.02891 5.08011 5.10704 5.28347 5.42742 5.44671 5.49063 5.52537 5.77252 6.12802 6.82993 7.15105 7.37622 8.92062 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034426 B = 0.004302 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.147357 B = 6507.740883 C = 7058.852470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.107 4.107 5 C -0.024 4.024 6 C 0.169 3.831 7 N -0.412 5.412 8 O 0.056 5.944 9 C 0.207 3.793 10 C -0.014 4.014 11 C 0.034 3.966 12 C -0.539 4.539 13 H 0.079 0.921 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.971 3.029 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.256 1.256 20 N -0.512 5.512 21 H 0.049 0.951 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.114 0.886 34 H -0.007 1.007 35 H -0.004 1.004 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.911 1.728 -12.218 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.145 4.145 5 C -0.062 4.062 6 C -0.104 4.104 7 N -0.126 5.126 8 O 0.003 5.997 9 C -0.013 4.013 10 C -0.053 4.053 11 C -0.005 4.005 12 C -0.577 4.577 13 H 0.097 0.903 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.180 1.180 20 N -0.247 5.247 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.011 0.989 35 H 0.015 0.985 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.480 2.243 -12.399 17.734 hybrid contribution 0.989 -0.044 0.885 1.328 sum -11.491 2.199 -11.514 16.415 Atomic orbital electron populations 1.21914 0.94222 1.02347 1.02192 1.21078 0.96646 0.96213 0.96816 1.21849 1.00851 0.95688 1.02238 1.21601 1.00684 0.92837 0.99426 1.20247 1.02374 0.94190 0.89424 1.26581 0.87848 0.98716 0.97286 1.74532 1.19750 1.15647 1.02650 1.85244 1.24253 1.52163 1.38018 1.29566 0.88990 0.94810 0.87888 1.20517 0.88064 0.96523 1.00179 1.18946 0.93285 0.94125 0.94105 1.21572 1.08417 0.94501 1.33182 0.90293 1.26013 1.01105 0.95767 0.96951 1.70116 1.35442 1.08917 1.43077 0.85357 0.78609 0.78911 0.77631 1.19922 1.21311 1.17962 1.71943 1.20039 1.16078 1.16600 0.93190 0.91307 0.91964 0.89766 0.93192 0.91062 0.93179 0.92885 0.92975 0.87338 0.87315 0.86653 0.86761 0.98879 0.98532 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.95 71.98 0.64 -1.53 16 2 C -0.09 -1.52 2.92 -10.80 -0.03 -1.55 16 3 C -0.15 -2.48 9.19 71.98 0.66 -1.82 16 4 C -0.11 -2.49 4.66 30.59 0.14 -2.35 16 5 C -0.02 -0.57 5.60 29.85 0.17 -0.40 16 6 C 0.17 5.75 7.47 138.47 1.03 6.79 16 7 N -0.41 -15.22 12.16 -60.32 -0.73 -15.95 16 8 O 0.06 2.14 11.31 74.86 0.85 2.99 16 9 C 0.21 8.02 7.77 88.38 0.69 8.71 16 10 C -0.01 -0.54 5.78 29.85 0.17 -0.37 16 11 C 0.03 1.71 4.95 29.85 0.15 1.86 16 12 C -0.54 -28.76 9.11 25.60 0.23 -28.53 16 13 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 14 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 15 N -0.94 -56.12 13.29 21.45 0.28 -55.83 16 16 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 20 N -0.51 -19.72 11.55 -303.19 -3.50 -23.22 16 21 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.06 0.84 6.57 -2.39 -0.02 0.83 16 24 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.11 2.18 6.57 -2.39 -0.02 2.16 16 32 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 33 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -64.43 306.05 4.29 -60.14 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.04 Total: 6.05 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 4.32 Total: -18.75 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -3.95 Total: -95.01 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.85 Total: 2.99 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -64.43 4.29 -60.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232620945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.390 kcal (2) G-P(sol) polarization free energy of solvation -64.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds