Wall clock time and date at job start Sun Mar 29 2020 22:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 110.28874 * 2 1 4 4 C 1.54265 * 110.32250 * 122.23135 * 2 1 3 5 5 C 1.54384 * 105.05582 * 118.89899 * 4 2 1 6 6 N 1.48552 * 104.59939 * 23.85374 * 5 4 2 7 7 C 1.46894 * 111.00149 * 200.95969 * 6 5 4 8 8 C 1.52997 * 109.47329 * 285.41332 * 7 6 5 9 9 H 1.08995 * 109.47391 * 305.00303 * 8 7 6 10 10 C 1.47208 * 109.46599 * 65.00104 * 8 7 6 11 11 N 5.45864 * 127.50707 * 163.62899 * 2 1 3 12 12 C 1.52997 * 109.47256 * 184.99609 * 8 7 6 13 13 C 1.50701 * 109.47005 * 175.00124 * 12 8 7 14 14 H 1.07999 * 119.99848 * 0.02562 * 13 12 8 15 15 C 1.37877 * 119.99969 * 180.02562 * 13 12 8 16 16 N 1.31509 * 119.99997 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99902 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47408 * 90.00110 * 17 15 13 19 19 H 1.48507 * 109.46983 * 210.00116 * 17 15 13 20 20 H 1.48500 * 109.47340 * 329.99719 * 17 15 13 21 21 C 1.48566 * 104.21909 * 320.51708 * 6 5 4 22 22 H 1.09002 * 109.47153 * 182.12811 * 1 2 3 23 23 H 1.09001 * 109.46832 * 62.13002 * 1 2 3 24 24 H 1.09004 * 109.47261 * 302.12983 * 1 2 3 25 25 H 0.96695 * 113.99897 * 59.29510 * 3 2 1 26 26 H 1.09003 * 110.32219 * 237.78875 * 4 2 1 27 27 H 1.09000 * 110.32588 * 0.02562 * 4 2 1 28 28 H 1.08998 * 110.40997 * 265.07130 * 5 4 2 29 29 H 1.09005 * 110.50787 * 142.68657 * 5 4 2 30 30 H 1.08998 * 109.47325 * 45.42202 * 7 6 5 31 31 H 1.09007 * 109.47081 * 165.41751 * 7 6 5 32 32 H 1.09000 * 109.47596 * 295.00139 * 12 8 7 33 33 H 1.08998 * 109.46965 * 55.01074 * 12 8 7 34 34 H 0.97008 * 120.00032 * 179.97438 * 16 15 13 35 35 H 1.08994 * 110.41334 * 280.70012 * 21 6 5 36 36 H 1.09003 * 110.50978 * 158.31079 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0255 1.3404 0.0000 4 6 2.0657 -0.7715 1.2237 5 6 2.8806 -1.9427 0.6340 6 7 3.2694 -1.4822 -0.7237 7 6 3.6069 -2.6202 -1.5891 8 6 4.9772 -3.1735 -1.1928 9 1 5.7150 -2.3718 -1.2217 10 6 4.9074 -3.7273 0.1693 11 7 4.8535 -4.1547 1.2205 12 6 5.3842 -4.2768 -2.1716 13 6 6.7842 -4.7367 -1.8561 14 1 7.3289 -4.2874 -1.0390 15 6 7.3696 -5.7312 -2.6107 16 7 6.7060 -6.2787 -3.6054 17 14 9.1046 -6.3018 -2.2192 18 1 9.0498 -7.4187 -1.2421 19 1 9.7660 -6.7662 -3.4652 20 1 9.8776 -5.1743 -1.6392 21 6 2.0662 -0.7699 -1.2259 22 1 -0.3633 -1.0270 0.0382 23 1 -0.3633 0.4804 -0.9085 24 1 -0.3634 0.5466 0.8703 25 1 1.7388 1.8657 0.7595 26 1 2.7082 -0.1284 1.8252 27 1 1.2387 -1.1506 1.8241 28 1 2.2648 -2.8397 0.5694 29 1 3.7671 -2.1339 1.2390 30 1 2.8534 -3.3995 -1.4749 31 1 3.6346 -2.2911 -2.6279 32 1 4.6961 -5.1170 -2.0787 33 1 5.3498 -3.8898 -3.1900 34 1 7.1180 -6.9781 -4.1366 35 1 1.3230 -1.4833 -1.5817 36 1 2.3375 -0.0761 -2.0217 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247322696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:43 Heat of formation + Delta-G solvation = -28.268158 kcal Electronic energy + Delta-G solvation = -16992.193326 eV Core-core repulsion = 14283.057747 eV Total energy + Delta-G solvation = -2709.135579 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.73702 -37.16487 -35.37324 -33.85472 -32.40356 -30.84875 -29.53069 -27.24043 -25.31954 -23.35508 -21.82632 -21.01234 -20.30489 -17.14871 -16.78569 -16.36653 -15.62671 -14.91762 -14.77639 -14.43462 -13.93614 -13.76012 -13.51975 -12.77183 -12.70006 -12.46723 -12.38298 -12.11250 -12.00908 -11.79645 -11.35597 -11.19479 -11.01454 -10.84993 -10.77071 -10.66883 -10.45363 -10.21965 -10.02532 -9.51356 -9.21801 -8.44401 -8.36088 -6.08461 -4.11404 3.31016 3.37425 3.41251 3.59465 3.66116 4.00752 4.05622 4.42535 4.46312 4.59262 4.82818 4.83745 5.11284 5.20262 5.29640 5.33648 5.47544 5.55702 5.65995 5.69952 5.73976 5.82231 5.87740 6.02824 6.04019 6.14999 6.37114 6.56321 6.89220 7.13082 7.44643 7.54129 7.57398 7.86814 8.24590 8.42874 8.93117 9.54020 11.02502 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048306 B = 0.004981 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.498210 B = 5619.966801 C = 5839.885732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.125 3.875 3 O -0.549 6.549 4 C -0.150 4.150 5 C 0.026 3.974 6 N -0.506 5.506 7 C 0.051 3.949 8 C 0.010 3.990 9 H 0.111 0.889 10 C 0.250 3.750 11 N -0.482 5.482 12 C 0.032 3.968 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.045 3.955 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.372 0.628 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.024 0.976 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.057 0.943 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 12.460 4.557 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.084 3.916 3 O -0.354 6.354 4 C -0.189 4.189 5 C -0.102 4.102 6 N -0.229 5.229 7 C -0.078 4.078 8 C -0.012 4.012 9 H 0.129 0.871 10 C -0.066 4.066 11 N -0.159 5.159 12 C -0.007 4.007 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.083 4.083 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.219 0.781 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.748 11.811 5.442 17.525 hybrid contribution 0.049 -0.769 0.272 0.817 sum -11.699 11.042 5.714 17.072 Atomic orbital electron populations 1.22475 0.95326 1.02748 1.02590 1.21906 0.91751 0.82848 0.95135 1.86622 1.75977 1.23074 1.49759 1.23097 0.99825 0.98186 0.97763 1.23324 0.99461 0.95745 0.91672 1.65472 1.32163 1.23308 1.02001 1.22440 0.96173 0.91220 0.97953 1.19289 0.96981 1.00057 0.84906 0.87134 1.29200 0.91474 0.91568 0.94374 1.81020 1.10335 1.11082 1.13476 1.19171 0.96928 0.91367 0.93189 1.21147 0.99361 1.20196 1.15669 0.92491 1.24946 0.97939 0.96161 0.94892 1.69939 1.37415 1.26425 1.19319 0.86591 0.84555 0.79152 0.77777 1.20702 1.21078 1.19695 1.23065 0.91906 0.96754 0.96605 0.91516 0.91584 0.92185 0.78123 0.90218 0.91029 0.93833 0.89359 0.93941 0.88697 0.95793 0.94190 0.92813 0.92522 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 8.56 37.16 0.32 -1.10 16 2 C 0.12 1.33 1.44 -89.24 -0.13 1.20 16 3 O -0.55 -6.08 12.96 -35.23 -0.46 -6.54 16 4 C -0.15 -1.71 6.45 -25.34 -0.16 -1.87 16 5 C 0.03 0.38 4.98 -2.18 -0.01 0.37 16 6 N -0.51 -7.43 5.34 -229.98 -1.23 -8.66 16 7 C 0.05 0.80 4.50 -3.83 -0.02 0.78 16 8 C 0.01 0.18 2.42 -93.41 -0.23 -0.04 16 9 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 10 C 0.25 5.19 10.96 -20.76 -0.23 4.96 16 11 N -0.48 -10.57 17.72 42.15 0.75 -9.82 16 12 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 13 C -0.53 -14.17 8.60 -34.44 -0.30 -14.46 16 14 H 0.06 1.53 7.59 -52.49 -0.40 1.14 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 17 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.04 0.55 5.74 -2.18 -0.01 0.53 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.37 2.55 9.08 45.56 0.41 2.97 16 26 H 0.08 0.90 7.99 -51.93 -0.41 0.49 16 27 H 0.07 0.70 7.71 -51.93 -0.40 0.30 16 28 H 0.04 0.64 7.75 -51.93 -0.40 0.24 16 29 H 0.09 1.47 5.75 -51.93 -0.30 1.17 16 30 H 0.04 0.65 7.77 -51.93 -0.40 0.25 16 31 H 0.09 1.35 8.08 -51.92 -0.42 0.93 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.06 0.63 7.72 -51.93 -0.40 0.23 16 36 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -30.83 298.38 -6.53 -37.36 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.82 Total: -0.99 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.99 Total: -7.36 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.26 Total: -43.44 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.46 Total: -6.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.83 -6.53 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247322696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.089 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds