Wall clock time and date at job start Sun Mar 29 2020 22:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 O 1.42903 * 110.27342 * 2 1 4 4 C 1.54596 * 110.31196 * 237.91716 * 2 1 3 5 5 C 1.55188 * 102.80434 * 219.04858 * 4 2 1 6 6 N 1.48537 * 103.23604 * 37.42997 * 5 4 2 7 7 C 1.46905 * 110.99725 * 200.25613 * 6 5 4 8 8 C 1.52995 * 109.47480 * 307.39694 * 7 6 5 9 9 H 1.08998 * 109.47203 * 304.99931 * 8 7 6 10 10 C 1.47201 * 109.47069 * 65.00386 * 8 7 6 11 11 N 5.06233 * 150.01830 * 209.74596 * 2 1 3 12 12 C 1.53001 * 109.47343 * 185.00117 * 8 7 6 13 13 C 1.50699 * 109.47248 * 175.00155 * 12 8 7 14 14 H 1.07994 * 119.99884 * 359.97438 * 13 12 8 15 15 C 1.37873 * 119.99867 * 180.02562 * 13 12 8 16 16 N 1.31509 * 120.00075 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99987 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47271 * 90.00364 * 17 15 13 19 19 H 1.48506 * 109.46936 * 209.99795 * 17 15 13 20 20 H 1.48500 * 109.47186 * 329.99737 * 17 15 13 21 21 C 1.47904 * 105.82101 * 320.76937 * 6 5 4 22 22 H 1.09002 * 109.47447 * 59.29676 * 1 2 3 23 23 H 1.09004 * 109.47308 * 179.29407 * 1 2 3 24 24 H 1.09003 * 109.47668 * 299.29767 * 1 2 3 25 25 H 0.96700 * 114.00311 * 300.70489 * 3 2 1 26 26 H 1.09006 * 110.72287 * 337.38262 * 4 2 1 27 27 H 1.09001 * 110.72819 * 100.66555 * 4 2 1 28 28 H 1.09006 * 110.68590 * 278.98515 * 5 4 2 29 29 H 1.08997 * 110.78774 * 155.92766 * 5 4 2 30 30 H 1.09007 * 109.46854 * 67.39951 * 7 6 5 31 31 H 1.09006 * 109.46779 * 187.39426 * 7 6 5 32 32 H 1.09006 * 109.47085 * 295.00132 * 12 8 7 33 33 H 1.09002 * 109.46887 * 54.99626 * 12 8 7 34 34 H 0.97001 * 120.00473 * 180.02562 * 16 15 13 35 35 H 1.08997 * 109.91742 * 265.97719 * 21 6 5 36 36 H 1.08996 * 109.91060 * 144.68072 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0251 1.3405 0.0000 4 6 2.0665 -0.7701 -1.2284 5 6 3.2881 -1.5325 -0.6497 6 7 2.8333 -1.9215 0.7098 7 6 3.9768 -2.2224 1.5814 8 6 4.8837 -3.2474 0.8975 9 1 4.2993 -4.1272 0.6283 10 6 5.4657 -2.6542 -0.3174 11 7 5.9148 -2.1964 -1.2552 12 6 6.0061 -3.6541 1.8545 13 6 6.8267 -4.7522 1.2284 14 1 6.5729 -5.1231 0.2465 15 6 7.9010 -5.2839 1.9097 16 7 8.6168 -6.2424 1.3637 17 14 8.3396 -4.6427 3.6086 18 1 7.6148 -5.4307 4.6375 19 1 9.8030 -4.7741 3.8246 20 1 7.9501 -3.2136 3.7141 21 6 2.0644 -0.7672 1.2235 22 1 -0.3634 0.5247 -0.8836 23 1 -0.3634 -1.0276 -0.0127 24 1 -0.3634 0.5029 0.8962 25 1 1.7382 1.8658 -0.7595 26 1 1.3178 -1.4679 -1.6034 27 1 2.3774 -0.0786 -2.0116 28 1 4.1581 -0.8782 -0.5917 29 1 3.5118 -2.4157 -1.2480 30 1 4.5397 -1.3083 1.7707 31 1 3.6163 -2.6293 2.5262 32 1 6.6436 -2.7927 2.0538 33 1 5.5747 -4.0110 2.7897 34 1 9.3724 -6.6168 1.8431 35 1 2.7147 -0.1204 1.8124 36 1 1.2326 -1.1176 1.8345 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247322702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:45 Heat of formation + Delta-G solvation = -17.920862 kcal Electronic energy + Delta-G solvation = -17150.166720 eV Core-core repulsion = 14441.479834 eV Total energy + Delta-G solvation = -2708.686886 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92118 -37.40089 -35.34018 -33.96132 -32.40288 -31.00289 -29.66137 -27.59463 -25.35788 -23.57906 -21.61934 -20.93894 -20.31979 -17.17736 -16.95918 -16.53888 -15.90195 -15.49524 -14.48577 -14.33362 -13.93462 -13.62763 -13.37031 -13.22540 -12.97821 -12.57147 -12.46435 -12.22810 -12.00001 -11.79009 -11.55163 -11.35147 -11.06628 -11.02814 -10.76776 -10.73232 -10.40698 -10.02963 -9.93115 -9.73168 -9.32515 -8.61587 -8.40854 -6.10609 -4.11347 3.26299 3.35157 3.36365 3.50205 3.54799 3.79239 4.18540 4.38594 4.46172 4.54965 4.68032 4.71782 5.17683 5.23859 5.25843 5.27548 5.42965 5.53192 5.60105 5.68547 5.71569 5.84655 5.90569 5.94376 5.99167 6.07369 6.16879 6.33963 6.80278 6.93413 7.01409 7.14515 7.47637 7.63412 8.32094 8.42116 8.92559 9.49256 11.02501 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.043853 B = 0.005500 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.350804 B = 5089.462374 C = 5376.364072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.115 3.885 3 O -0.559 6.559 4 C -0.148 4.148 5 C 0.027 3.973 6 N -0.513 5.513 7 C 0.051 3.949 8 C 0.014 3.986 9 H 0.116 0.884 10 C 0.244 3.756 11 N -0.471 5.471 12 C -0.004 4.004 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.047 3.953 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.375 0.625 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.023 0.977 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.059 0.941 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.596 11.726 0.229 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 O -0.365 6.365 4 C -0.187 4.187 5 C -0.101 4.101 6 N -0.238 5.238 7 C -0.078 4.078 8 C -0.007 4.007 9 H 0.134 0.866 10 C -0.072 4.072 11 N -0.148 5.148 12 C -0.043 4.043 13 C -0.566 4.566 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.081 4.081 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.223 0.777 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.792 11.613 -0.604 19.612 hybrid contribution 0.561 0.844 0.717 1.241 sum -15.231 12.457 0.113 19.676 Atomic orbital electron populations 1.22413 0.94839 1.03145 1.02240 1.22078 0.92808 0.82298 0.95375 1.86578 1.76236 1.23544 1.50165 1.23275 0.98518 0.99647 0.97225 1.23655 0.96411 0.99338 0.90647 1.64991 1.21431 1.34919 1.02418 1.22500 0.90253 0.98228 0.96858 1.19096 0.96741 0.97044 0.87859 0.86627 1.28932 0.91704 0.92433 0.94120 1.81077 1.10949 1.10626 1.12198 1.19633 0.92643 0.97659 0.94381 1.21018 1.12486 1.18197 1.04880 0.90798 1.24983 0.95732 0.94455 0.97891 1.69902 1.18997 1.26289 1.38327 0.86820 0.77834 0.80089 0.84842 1.19938 1.21314 1.18898 1.22864 0.98955 0.90802 0.95495 0.92437 0.90863 0.91823 0.77747 0.89927 0.90744 0.92718 0.89461 0.93912 0.88462 0.95824 0.94622 0.92555 0.92264 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 8.55 37.15 0.32 -1.05 16 2 C 0.12 1.23 1.38 -89.27 -0.12 1.10 16 3 O -0.56 -6.21 12.94 -35.23 -0.46 -6.66 16 4 C -0.15 -1.69 6.37 -24.73 -0.16 -1.85 16 5 C 0.03 0.40 4.37 -1.76 -0.01 0.39 16 6 N -0.51 -7.09 5.40 -230.28 -1.24 -8.33 16 7 C 0.05 0.75 4.71 -3.82 -0.02 0.73 16 8 C 0.01 0.26 2.29 -93.41 -0.21 0.05 16 9 H 0.12 2.04 8.14 -51.93 -0.42 1.61 16 10 C 0.24 4.97 9.67 -20.76 -0.20 4.77 16 11 N -0.47 -10.30 17.37 42.15 0.73 -9.56 16 12 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 13 C -0.53 -14.32 9.15 -34.44 -0.32 -14.63 16 14 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 17 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 21 C 0.05 0.56 6.18 -2.75 -0.02 0.54 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.38 2.64 9.08 45.56 0.41 3.05 16 26 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 27 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 28 H 0.05 0.92 6.33 -51.93 -0.33 0.60 16 29 H 0.09 1.40 6.50 -51.93 -0.34 1.06 16 30 H 0.04 0.65 7.81 -51.92 -0.41 0.24 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 33 H 0.04 0.72 7.57 -51.93 -0.39 0.32 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 35 H 0.06 0.77 7.39 -51.93 -0.38 0.38 16 36 H 0.09 0.94 7.68 -51.93 -0.40 0.54 16 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -31.71 291.86 -6.12 -37.83 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.73 Total: 0.84 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.93 Total: -8.20 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.26 Total: -44.31 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.46 Total: -6.66 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.71 -6.12 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247322702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.910 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds