Wall clock time and date at job start Sun Mar 29 2020 22:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 O 1.42903 * 110.27342 * 2 1 4 4 C 1.54596 * 110.31196 * 237.91716 * 2 1 3 5 5 C 1.55188 * 102.80434 * 219.04858 * 4 2 1 6 6 N 1.48537 * 103.23604 * 37.42997 * 5 4 2 7 7 C 1.46905 * 110.99725 * 200.25613 * 6 5 4 8 8 C 1.52995 * 109.47480 * 307.39694 * 7 6 5 9 9 H 1.08998 * 109.47203 * 304.99931 * 8 7 6 10 10 C 1.47201 * 109.47069 * 65.00386 * 8 7 6 11 11 N 5.06233 * 150.01830 * 209.74596 * 2 1 3 12 12 C 1.53001 * 109.47343 * 185.00117 * 8 7 6 13 13 C 1.50699 * 109.47248 * 175.00155 * 12 8 7 14 14 H 1.07994 * 119.99884 * 359.97438 * 13 12 8 15 15 C 1.37873 * 119.99867 * 180.02562 * 13 12 8 16 16 N 1.31509 * 120.00075 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99987 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47271 * 90.00364 * 17 15 13 19 19 H 1.48506 * 109.46936 * 209.99795 * 17 15 13 20 20 H 1.48500 * 109.47186 * 329.99737 * 17 15 13 21 21 C 1.47904 * 105.82101 * 320.76937 * 6 5 4 22 22 H 1.09002 * 109.47447 * 59.29676 * 1 2 3 23 23 H 1.09004 * 109.47308 * 179.29407 * 1 2 3 24 24 H 1.09003 * 109.47668 * 299.29767 * 1 2 3 25 25 H 0.96700 * 114.00311 * 300.70489 * 3 2 1 26 26 H 1.09006 * 110.72287 * 337.38262 * 4 2 1 27 27 H 1.09001 * 110.72819 * 100.66555 * 4 2 1 28 28 H 1.09006 * 110.68590 * 278.98515 * 5 4 2 29 29 H 1.08997 * 110.78774 * 155.92766 * 5 4 2 30 30 H 1.09007 * 109.46854 * 67.39951 * 7 6 5 31 31 H 1.09006 * 109.46779 * 187.39426 * 7 6 5 32 32 H 1.09006 * 109.47085 * 295.00132 * 12 8 7 33 33 H 1.09002 * 109.46887 * 54.99626 * 12 8 7 34 34 H 0.97001 * 120.00473 * 180.02562 * 16 15 13 35 35 H 1.08997 * 109.91742 * 265.97719 * 21 6 5 36 36 H 1.08996 * 109.91060 * 144.68072 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0251 1.3405 0.0000 4 6 2.0665 -0.7701 -1.2284 5 6 3.2881 -1.5325 -0.6497 6 7 2.8333 -1.9215 0.7098 7 6 3.9768 -2.2224 1.5814 8 6 4.8837 -3.2474 0.8975 9 1 4.2993 -4.1272 0.6283 10 6 5.4657 -2.6542 -0.3174 11 7 5.9148 -2.1964 -1.2552 12 6 6.0061 -3.6541 1.8545 13 6 6.8267 -4.7522 1.2284 14 1 6.5729 -5.1231 0.2465 15 6 7.9010 -5.2839 1.9097 16 7 8.6168 -6.2424 1.3637 17 14 8.3396 -4.6427 3.6086 18 1 7.6148 -5.4307 4.6375 19 1 9.8030 -4.7741 3.8246 20 1 7.9501 -3.2136 3.7141 21 6 2.0644 -0.7672 1.2235 22 1 -0.3634 0.5247 -0.8836 23 1 -0.3634 -1.0276 -0.0127 24 1 -0.3634 0.5029 0.8962 25 1 1.7382 1.8658 -0.7595 26 1 1.3178 -1.4679 -1.6034 27 1 2.3774 -0.0786 -2.0116 28 1 4.1581 -0.8782 -0.5917 29 1 3.5118 -2.4157 -1.2480 30 1 4.5397 -1.3083 1.7707 31 1 3.6163 -2.6293 2.5262 32 1 6.6436 -2.7927 2.0538 33 1 5.5747 -4.0110 2.7897 34 1 9.3724 -6.6168 1.8431 35 1 2.7147 -0.1204 1.8124 36 1 1.2326 -1.1176 1.8345 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247322702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:45 Heat of formation + Delta-G solvation = -42.990393 kcal Electronic energy + Delta-G solvation = -17151.253817 eV Core-core repulsion = 14441.479834 eV Total energy + Delta-G solvation = -2709.773983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.94931 -38.66942 -36.58819 -35.66505 -34.10594 -32.20843 -30.63951 -29.08663 -26.50812 -24.79349 -23.39748 -22.12441 -21.19118 -18.93783 -18.57233 -17.60453 -17.03995 -16.51910 -16.17923 -15.55567 -15.23462 -14.83216 -14.66653 -14.41460 -14.27248 -14.14881 -13.93530 -13.42283 -13.15572 -13.12598 -12.75299 -12.52144 -12.34130 -12.30767 -12.24104 -12.07869 -11.69003 -11.67135 -11.44694 -11.23829 -10.85997 -10.74037 -9.51829 -8.25940 -6.31867 1.41932 1.44728 1.54985 1.88631 1.90413 2.40099 2.82267 3.09014 3.17566 3.29307 3.58028 3.68180 3.87336 4.07496 4.21137 4.31950 4.42601 4.47050 4.64395 4.67088 4.76703 4.80269 4.87063 4.93699 5.00659 5.04391 5.13129 5.20020 5.31605 5.40864 5.60931 5.73966 5.93936 6.24359 6.69707 6.77200 6.85170 7.32715 8.91044 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.043853 B = 0.005500 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.350804 B = 5089.462374 C = 5376.364072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.118 3.882 3 O -0.577 6.577 4 C -0.143 4.143 5 C 0.025 3.975 6 N -0.512 5.512 7 C 0.059 3.941 8 C 0.020 3.980 9 H 0.121 0.879 10 C 0.252 3.748 11 N -0.506 5.506 12 C -0.001 4.001 13 C -0.532 4.532 14 H 0.029 0.971 15 C 0.005 3.995 16 N -0.953 5.953 17 Si 0.949 3.051 18 H -0.254 1.254 19 H -0.294 1.294 20 H -0.241 1.241 21 C 0.042 3.958 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.392 0.608 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.126 0.874 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.265 0.735 35 H 0.049 0.951 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.759 13.236 2.229 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.077 3.923 3 O -0.386 6.386 4 C -0.182 4.182 5 C -0.104 4.104 6 N -0.236 5.236 7 C -0.071 4.071 8 C -0.002 4.002 9 H 0.138 0.862 10 C -0.064 4.064 11 N -0.184 5.184 12 C -0.040 4.040 13 C -0.570 4.570 14 H 0.047 0.953 15 C -0.192 4.192 16 N -0.594 5.594 17 Si 0.772 3.228 18 H -0.179 1.179 19 H -0.221 1.221 20 H -0.164 1.164 21 C -0.085 4.085 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.242 0.758 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.144 0.856 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.994 13.149 1.384 22.329 hybrid contribution 1.224 0.353 -0.026 1.274 sum -16.770 13.502 1.358 21.572 Atomic orbital electron populations 1.22343 0.92470 1.03747 1.03317 1.22078 0.94412 0.81888 0.93955 1.86536 1.76825 1.23879 1.51383 1.23291 0.97280 0.99767 0.97839 1.23531 0.97054 0.98284 0.91488 1.65008 1.20746 1.36003 1.01824 1.22456 0.90037 0.97034 0.97523 1.19145 0.96266 0.98335 0.86422 0.86160 1.29478 0.90982 0.91647 0.94281 1.81057 1.12062 1.11997 1.13271 1.19576 0.93028 0.95615 0.95820 1.21368 1.13130 1.19236 1.03285 0.95310 1.26024 0.95679 0.94638 1.02868 1.70082 1.20100 1.28527 1.40687 0.85683 0.77167 0.80834 0.79165 1.17852 1.22089 1.16370 1.23018 0.99094 0.90159 0.96259 0.90936 0.90468 0.91240 0.75822 0.88682 0.90245 0.95420 0.91546 0.94193 0.85562 0.95793 0.91594 0.92591 0.93237 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 8.55 71.98 0.62 -1.43 16 2 C 0.12 2.20 1.38 -9.92 -0.01 2.18 16 3 O -0.58 -11.55 12.94 -148.98 -1.93 -13.48 16 4 C -0.14 -3.03 6.37 31.89 0.20 -2.83 16 5 C 0.02 0.71 4.37 86.74 0.38 1.09 16 6 N -0.51 -13.12 5.40 -882.46 -4.76 -17.88 16 7 C 0.06 1.59 4.71 86.30 0.41 2.00 16 8 C 0.02 0.71 2.29 -12.60 -0.03 0.68 16 9 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 10 C 0.25 10.40 9.67 89.44 0.87 11.27 16 11 N -0.51 -22.78 17.37 20.01 0.35 -22.43 16 12 C 0.00 -0.06 3.49 29.85 0.10 0.05 16 13 C -0.53 -29.23 9.15 25.60 0.23 -28.99 16 14 H 0.03 1.78 7.84 -2.91 -0.02 1.76 16 15 C 0.00 0.27 5.47 84.65 0.46 0.73 16 16 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 17 Si 0.95 41.96 27.47 68.60 1.88 43.84 16 18 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 20 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 21 C 0.04 0.90 6.18 86.44 0.53 1.43 16 22 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.08 0.94 8.13 -2.38 -0.02 0.92 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.39 4.61 9.08 -74.06 -0.67 3.94 16 26 H 0.09 1.77 7.86 -2.38 -0.02 1.75 16 27 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 28 H 0.03 0.94 6.33 -2.38 -0.02 0.93 16 29 H 0.07 2.16 6.50 -2.39 -0.02 2.15 16 30 H 0.04 1.12 7.81 -2.38 -0.02 1.10 16 31 H 0.13 2.73 8.14 -2.38 -0.02 2.72 16 32 H 0.02 1.00 7.20 -2.38 -0.02 0.99 16 33 H 0.07 2.40 7.57 -2.39 -0.02 2.38 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.05 1.16 7.39 -2.39 -0.02 1.15 16 36 H 0.11 1.91 7.68 -2.39 -0.02 1.89 16 Total: -1.00 -70.59 291.86 -0.05 -70.65 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.34 Total: 12.30 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 3.76 Total: -13.83 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -4.12 Total: -99.48 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.93 Total: -13.48 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.88 Total: 43.84 kcal Total: -70.59 -0.05 -70.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247322702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.655 kcal (2) G-P(sol) polarization free energy of solvation -70.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds