Wall clock time and date at job start Sun Mar 29 2020 21:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47300 * 299.99881 * 3 2 1 6 6 H 1.48497 * 109.47404 * 60.00256 * 3 2 1 7 7 C 1.38819 * 119.99403 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99439 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00340 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00150 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.49530 * 324.93337 * 10 9 7 12 12 C 1.53044 * 109.50113 * 84.99703 * 10 9 7 13 13 C 1.53042 * 109.53672 * 181.31799 * 12 10 9 14 14 C 1.53187 * 109.31414 * 298.63424 * 13 12 10 15 15 N 1.46920 * 108.77538 * 54.63627 * 14 13 12 16 16 C 1.34778 * 120.63171 * 126.36984 * 15 14 13 17 17 O 1.21277 * 120.00426 * 180.02562 * 16 15 14 18 18 C 1.50706 * 119.99906 * 359.97438 * 16 15 14 19 19 C 1.52995 * 117.50181 * 248.75034 * 18 16 15 20 20 C 1.52993 * 117.50081 * 180.08799 * 18 16 15 21 21 C 1.46932 * 118.74166 * 306.64181 * 15 14 13 22 22 H 0.97005 * 119.99474 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00380 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.45437 * 61.29647 * 12 10 9 25 25 H 1.09002 * 109.45897 * 301.33828 * 12 10 9 26 26 H 1.09000 * 109.49295 * 178.68113 * 13 12 10 27 27 H 1.08994 * 109.52179 * 58.60945 * 13 12 10 28 28 H 1.09001 * 109.58786 * 294.85172 * 14 13 12 29 29 H 1.09000 * 109.70499 * 174.49439 * 14 13 12 30 30 H 1.08998 * 115.54512 * 34.41796 * 18 16 15 31 31 H 1.09000 * 117.49859 * 0.02562 * 19 18 16 32 32 H 1.08999 * 117.49900 * 145.01759 * 19 18 16 33 33 H 1.08998 * 117.50372 * 214.98309 * 20 18 16 34 34 H 1.09006 * 117.50059 * 359.97438 * 20 18 16 35 35 H 1.08997 * 109.58535 * 173.14183 * 21 15 14 36 36 H 1.08995 * 109.58574 * 293.56818 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0017 11 1 2.9686 -3.5517 -0.5880 12 6 2.4211 -4.0358 1.4393 13 6 3.2147 -5.3443 1.4387 14 6 2.3490 -6.4617 0.8482 15 7 1.8757 -6.0425 -0.4780 16 6 2.0771 -6.8237 -1.5576 17 8 1.6820 -6.4663 -2.6471 18 6 2.7944 -8.1410 -1.4112 19 6 4.1852 -8.2615 -2.0372 20 6 2.9938 -8.9810 -2.6742 21 6 1.1839 -4.7525 -0.6060 22 1 -0.4849 0.8401 0.0004 23 1 0.3554 -2.3881 0.0005 24 1 1.5092 -4.1643 2.0223 25 1 3.0261 -3.2443 1.8816 26 1 3.4932 -5.6013 2.4607 27 1 4.1148 -5.2241 0.8357 28 1 1.4947 -6.6451 1.4999 29 1 2.9393 -7.3732 0.7542 30 1 2.6155 -8.6723 -0.4764 31 1 4.5817 -7.3879 -2.5546 32 1 4.9212 -8.8724 -1.5145 33 1 2.9464 -10.0650 -2.5705 34 1 2.6058 -8.5812 -3.6111 35 1 1.0079 -4.5353 -1.6596 36 1 0.2327 -4.7938 -0.0754 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260141413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:07 Heat of formation + Delta-G solvation = -0.928230 kcal Electronic energy + Delta-G solvation = -17218.773319 eV Core-core repulsion = 14510.823288 eV Total energy + Delta-G solvation = -2707.950031 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.15697 -37.69419 -35.97269 -34.46027 -32.15092 -31.24327 -28.52548 -25.77414 -24.26827 -22.89640 -22.53863 -22.03561 -19.90902 -18.58972 -17.51126 -17.18099 -15.74622 -15.18749 -15.03793 -14.42408 -14.03286 -14.00170 -13.50426 -13.45063 -12.93870 -12.64866 -12.46459 -12.18253 -11.68058 -11.14760 -10.93200 -10.90675 -10.74743 -10.66511 -10.50282 -10.40356 -10.33355 -10.05107 -9.74564 -9.54890 -8.91610 -8.37674 -6.98827 -5.77870 -3.07386 2.60651 3.09969 3.43227 3.48960 3.51068 3.79129 4.47233 4.58444 4.65623 4.77292 4.91846 5.05648 5.18239 5.29894 5.44790 5.53133 5.57117 5.59367 5.73556 5.77052 5.81101 5.85684 6.00831 6.06425 6.16863 6.26195 6.40180 6.55901 6.72996 6.89069 7.05142 7.61445 7.69755 8.35236 8.40604 9.51399 10.06744 10.41994 11.44785 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038689 B = 0.005436 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.543989 B = 5149.227346 C = 5351.916733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.168 3.832 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.133 4.133 14 C 0.108 3.892 15 N -0.601 5.601 16 C 0.540 3.460 17 O -0.544 6.544 18 C -0.193 4.193 19 C -0.153 4.153 20 C -0.150 4.150 21 C 0.106 3.894 22 H 0.255 0.745 23 H 0.384 0.616 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -17.927 1.807 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.362 5.362 10 C 0.057 3.943 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.015 4.015 15 N -0.334 5.334 16 C 0.328 3.672 17 O -0.422 6.422 18 C -0.214 4.214 19 C -0.190 4.190 20 C -0.188 4.188 21 C -0.017 4.017 22 H 0.065 0.935 23 H 0.218 0.782 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.790 -17.561 1.214 18.867 hybrid contribution 0.107 0.991 0.327 1.049 sum 6.897 -16.570 1.542 18.015 Atomic orbital electron populations 1.69675 1.05123 1.25612 1.57584 1.24748 0.95519 0.97701 1.02860 0.86114 0.78779 0.84084 0.77197 1.20556 1.21813 1.21853 1.19257 0.91006 0.83886 1.42804 0.91107 1.42315 1.05810 0.99526 1.88581 1.20390 0.94670 0.86024 0.93192 0.93289 1.22282 0.99608 0.95305 1.00602 1.21927 0.98842 0.95991 1.00412 1.21781 0.98280 0.97792 0.83629 1.48020 1.57465 1.20204 1.07711 1.19625 0.79079 0.84710 0.83775 1.90688 1.51561 1.73824 1.26084 1.22220 1.01812 0.97325 1.00018 1.22928 0.89830 1.03362 1.02897 1.22951 1.01170 0.98117 0.96532 1.21912 0.95101 0.81357 1.03303 0.93505 0.78196 0.92480 0.91563 0.91374 0.91846 0.91526 0.90083 0.85935 0.88207 0.87921 0.88117 0.87452 0.88968 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.72 -18.22 5.12 -53.52 -0.27 -18.50 16 10 C 0.17 3.41 2.91 -68.03 -0.20 3.21 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.14 -2.36 5.47 -26.69 -0.15 -2.51 16 13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 14 C 0.11 1.26 6.30 -3.72 -0.02 1.24 16 15 N -0.60 -9.19 2.98 -173.03 -0.52 -9.70 16 16 C 0.54 8.51 7.48 -10.98 -0.08 8.43 16 17 O -0.54 -10.77 15.67 5.56 0.09 -10.68 16 18 C -0.19 -2.13 4.96 -91.77 -0.46 -2.59 16 19 C -0.15 -1.46 10.24 -26.70 -0.27 -1.73 16 20 C -0.15 -1.50 10.05 -26.70 -0.27 -1.77 16 21 C 0.11 1.95 5.88 -3.93 -0.02 1.92 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.38 10.27 7.80 -40.82 -0.32 9.96 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.73 5.67 -51.93 -0.29 0.43 16 30 H 0.12 1.05 6.82 -51.93 -0.35 0.70 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.11 1.27 7.67 -51.93 -0.40 0.87 16 35 H 0.09 1.92 7.01 -51.93 -0.36 1.56 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 294.95 15.07 4.44 4.44 Total: -1.00 -32.27 294.95 -7.93 -40.20 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.50 Total: 7.18 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.88 Total: -2.90 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.06 Total: -55.74 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.27 -7.93 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260141413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.276 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds