Wall clock time and date at job start Sun Mar 29 2020 21:52:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86797 * 120.00178 * 2 1
4 4 H 1.48502 * 109.47200 * 179.97438 * 3 2 1
5 5 H 1.48492 * 109.47300 * 299.99881 * 3 2 1
6 6 H 1.48497 * 109.47404 * 60.00256 * 3 2 1
7 7 C 1.38819 * 119.99403 * 179.97438 * 2 1 3
8 8 H 1.08006 * 119.99439 * 179.97438 * 7 2 1
9 9 N 1.36927 * 120.00340 * 0.02562 * 7 2 1
10 10 C 1.46497 * 120.00150 * 180.02562 * 9 7 2
11 11 H 1.09005 * 109.49530 * 324.93337 * 10 9 7
12 12 C 1.53044 * 109.50113 * 84.99703 * 10 9 7
13 13 C 1.53042 * 109.53672 * 181.31799 * 12 10 9
14 14 C 1.53187 * 109.31414 * 298.63424 * 13 12 10
15 15 N 1.46920 * 108.77538 * 54.63627 * 14 13 12
16 16 C 1.34778 * 120.63171 * 126.36984 * 15 14 13
17 17 O 1.21277 * 120.00426 * 180.02562 * 16 15 14
18 18 C 1.50706 * 119.99906 * 359.97438 * 16 15 14
19 19 C 1.52995 * 117.50181 * 248.75034 * 18 16 15
20 20 C 1.52993 * 117.50081 * 180.08799 * 18 16 15
21 21 C 1.46932 * 118.74166 * 306.64181 * 15 14 13
22 22 H 0.97005 * 119.99474 * 359.97438 * 1 2 3
23 23 H 0.97000 * 120.00380 * 359.97438 * 9 7 2
24 24 H 1.08997 * 109.45437 * 61.29647 * 12 10 9
25 25 H 1.09002 * 109.45897 * 301.33828 * 12 10 9
26 26 H 1.09000 * 109.49295 * 178.68113 * 13 12 10
27 27 H 1.08994 * 109.52179 * 58.60945 * 13 12 10
28 28 H 1.09001 * 109.58786 * 294.85172 * 14 13 12
29 29 H 1.09000 * 109.70499 * 174.49439 * 14 13 12
30 30 H 1.08998 * 115.54512 * 34.41796 * 18 16 15
31 31 H 1.09000 * 117.49859 * 0.02562 * 19 18 16
32 32 H 1.08999 * 117.49900 * 145.01759 * 19 18 16
33 33 H 1.08998 * 117.50372 * 214.98309 * 20 18 16
34 34 H 1.09006 * 117.50059 * 359.97438 * 20 18 16
35 35 H 1.08997 * 109.58535 * 173.14183 * 21 15 14
36 36 H 1.08995 * 109.58574 * 293.56818 * 21 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8915 2.3964 -1.2124
6 1 1.8916 2.3964 1.2125
7 6 2.0101 -1.2023 0.0005
8 1 3.0902 -1.2023 0.0001
9 7 1.3254 -2.3881 0.0005
10 6 2.0578 -3.6568 0.0017
11 1 2.9686 -3.5517 -0.5880
12 6 2.4211 -4.0358 1.4393
13 6 3.2147 -5.3443 1.4387
14 6 2.3490 -6.4617 0.8482
15 7 1.8757 -6.0425 -0.4780
16 6 2.0771 -6.8237 -1.5576
17 8 1.6820 -6.4663 -2.6471
18 6 2.7944 -8.1410 -1.4112
19 6 4.1852 -8.2615 -2.0372
20 6 2.9938 -8.9810 -2.6742
21 6 1.1839 -4.7525 -0.6060
22 1 -0.4849 0.8401 0.0004
23 1 0.3554 -2.3881 0.0005
24 1 1.5092 -4.1643 2.0223
25 1 3.0261 -3.2443 1.8816
26 1 3.4932 -5.6013 2.4607
27 1 4.1148 -5.2241 0.8357
28 1 1.4947 -6.6451 1.4999
29 1 2.9393 -7.3732 0.7542
30 1 2.6155 -8.6723 -0.4764
31 1 4.5817 -7.3879 -2.5546
32 1 4.9212 -8.8724 -1.5145
33 1 2.9464 -10.0650 -2.5705
34 1 2.6058 -8.5812 -3.6111
35 1 1.0079 -4.5353 -1.6596
36 1 0.2327 -4.7938 -0.0754
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260141413.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:52:07
Heat of formation + Delta-G solvation = -0.928230 kcal
Electronic energy + Delta-G solvation = -17218.773319 eV
Core-core repulsion = 14510.823288 eV
Total energy + Delta-G solvation = -2707.950031 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.15697 -37.69419 -35.97269 -34.46027 -32.15092 -31.24327 -28.52548 -25.77414
-24.26827 -22.89640 -22.53863 -22.03561 -19.90902 -18.58972 -17.51126 -17.18099
-15.74622 -15.18749 -15.03793 -14.42408 -14.03286 -14.00170 -13.50426 -13.45063
-12.93870 -12.64866 -12.46459 -12.18253 -11.68058 -11.14760 -10.93200 -10.90675
-10.74743 -10.66511 -10.50282 -10.40356 -10.33355 -10.05107 -9.74564 -9.54890
-8.91610 -8.37674 -6.98827 -5.77870 -3.07386 2.60651 3.09969 3.43227
3.48960 3.51068 3.79129 4.47233 4.58444 4.65623 4.77292 4.91846
5.05648 5.18239 5.29894 5.44790 5.53133 5.57117 5.59367 5.73556
5.77052 5.81101 5.85684 6.00831 6.06425 6.16863 6.26195 6.40180
6.55901 6.72996 6.89069 7.05142 7.61445 7.69755 8.35236 8.40604
9.51399 10.06744 10.41994 11.44785
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.038689 B = 0.005436 C = 0.005231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 723.543989 B = 5149.227346 C = 5351.916733
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C -0.012 4.012
3 Si 0.907 3.093
4 H -0.280 1.280
5 H -0.291 1.291
6 H -0.291 1.291
7 C -0.238 4.238
8 H 0.071 0.929
9 N -0.721 5.721
10 C 0.168 3.832
11 H 0.049 0.951
12 C -0.137 4.137
13 C -0.133 4.133
14 C 0.108 3.892
15 N -0.601 5.601
16 C 0.540 3.460
17 O -0.544 6.544
18 C -0.193 4.193
19 C -0.153 4.153
20 C -0.150 4.150
21 C 0.106 3.894
22 H 0.255 0.745
23 H 0.384 0.616
24 H 0.056 0.944
25 H 0.066 0.934
26 H 0.068 0.932
27 H 0.063 0.937
28 H 0.066 0.934
29 H 0.081 0.919
30 H 0.123 0.877
31 H 0.099 0.901
32 H 0.102 0.898
33 H 0.100 0.900
34 H 0.107 0.893
35 H 0.092 0.908
36 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.899 -17.927 1.807 19.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.208 4.208
3 Si 0.738 3.262
4 H -0.206 1.206
5 H -0.218 1.218
6 H -0.219 1.219
7 C -0.370 4.370
8 H 0.089 0.911
9 N -0.362 5.362
10 C 0.057 3.943
11 H 0.067 0.933
12 C -0.178 4.178
13 C -0.172 4.172
14 C -0.015 4.015
15 N -0.334 5.334
16 C 0.328 3.672
17 O -0.422 6.422
18 C -0.214 4.214
19 C -0.190 4.190
20 C -0.188 4.188
21 C -0.017 4.017
22 H 0.065 0.935
23 H 0.218 0.782
24 H 0.075 0.925
25 H 0.084 0.916
26 H 0.086 0.914
27 H 0.082 0.918
28 H 0.085 0.915
29 H 0.099 0.901
30 H 0.141 0.859
31 H 0.118 0.882
32 H 0.121 0.879
33 H 0.119 0.881
34 H 0.125 0.875
35 H 0.110 0.890
36 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 6.790 -17.561 1.214 18.867
hybrid contribution 0.107 0.991 0.327 1.049
sum 6.897 -16.570 1.542 18.015
Atomic orbital electron populations
1.69675 1.05123 1.25612 1.57584 1.24748 0.95519 0.97701 1.02860
0.86114 0.78779 0.84084 0.77197 1.20556 1.21813 1.21853 1.19257
0.91006 0.83886 1.42804 0.91107 1.42315 1.05810 0.99526 1.88581
1.20390 0.94670 0.86024 0.93192 0.93289 1.22282 0.99608 0.95305
1.00602 1.21927 0.98842 0.95991 1.00412 1.21781 0.98280 0.97792
0.83629 1.48020 1.57465 1.20204 1.07711 1.19625 0.79079 0.84710
0.83775 1.90688 1.51561 1.73824 1.26084 1.22220 1.01812 0.97325
1.00018 1.22928 0.89830 1.03362 1.02897 1.22951 1.01170 0.98117
0.96532 1.21912 0.95101 0.81357 1.03303 0.93505 0.78196 0.92480
0.91563 0.91374 0.91846 0.91526 0.90083 0.85935 0.88207 0.87921
0.88117 0.87452 0.88968 0.91725
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16
2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16
3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16
4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16
5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16
6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
7 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16
8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16
9 N -0.72 -18.22 5.12 -53.52 -0.27 -18.50 16
10 C 0.17 3.41 2.91 -68.03 -0.20 3.21 16
11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16
12 C -0.14 -2.36 5.47 -26.69 -0.15 -2.51 16
13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16
14 C 0.11 1.26 6.30 -3.72 -0.02 1.24 16
15 N -0.60 -9.19 2.98 -173.03 -0.52 -9.70 16
16 C 0.54 8.51 7.48 -10.98 -0.08 8.43 16
17 O -0.54 -10.77 15.67 5.56 0.09 -10.68 16
18 C -0.19 -2.13 4.96 -91.77 -0.46 -2.59 16
19 C -0.15 -1.46 10.24 -26.70 -0.27 -1.73 16
20 C -0.15 -1.50 10.05 -26.70 -0.27 -1.77 16
21 C 0.11 1.95 5.88 -3.93 -0.02 1.92 16
22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
23 H 0.38 10.27 7.80 -40.82 -0.32 9.96 16
24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
25 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16
26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
29 H 0.08 0.73 5.67 -51.93 -0.29 0.43 16
30 H 0.12 1.05 6.82 -51.93 -0.35 0.70 16
31 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16
32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16
33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16
34 H 0.11 1.27 7.67 -51.93 -0.40 0.87 16
35 H 0.09 1.92 7.01 -51.93 -0.36 1.56 16
36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16
LS Contribution 294.95 15.07 4.44 4.44
Total: -1.00 -32.27 294.95 -7.93 -40.20
By element:
Atomic # 1 Polarization: 12.68 SS G_CDS: -5.50 Total: 7.18 kcal
Atomic # 6 Polarization: -1.03 SS G_CDS: -1.88 Total: -2.90 kcal
Atomic # 7 Polarization: -55.67 SS G_CDS: -0.06 Total: -55.74 kcal
Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal
Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -32.27 -7.93 -40.20 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260141413.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.276 kcal
(2) G-P(sol) polarization free energy of solvation -32.272 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.928 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds