Wall clock time and date at job start Sun Mar 29 2020 21:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47300 * 299.99881 * 3 2 1 6 6 H 1.48497 * 109.47404 * 60.00256 * 3 2 1 7 7 C 1.38819 * 119.99403 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99439 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00340 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00150 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.49530 * 324.93337 * 10 9 7 12 12 C 1.53044 * 109.50113 * 84.99703 * 10 9 7 13 13 C 1.53042 * 109.53672 * 181.31799 * 12 10 9 14 14 C 1.53187 * 109.31414 * 298.63424 * 13 12 10 15 15 N 1.46920 * 108.77538 * 54.63627 * 14 13 12 16 16 C 1.34778 * 120.63171 * 126.36984 * 15 14 13 17 17 O 1.21277 * 120.00426 * 180.02562 * 16 15 14 18 18 C 1.50706 * 119.99906 * 359.97438 * 16 15 14 19 19 C 1.52995 * 117.50181 * 248.75034 * 18 16 15 20 20 C 1.52993 * 117.50081 * 180.08799 * 18 16 15 21 21 C 1.46932 * 118.74166 * 306.64181 * 15 14 13 22 22 H 0.97005 * 119.99474 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00380 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.45437 * 61.29647 * 12 10 9 25 25 H 1.09002 * 109.45897 * 301.33828 * 12 10 9 26 26 H 1.09000 * 109.49295 * 178.68113 * 13 12 10 27 27 H 1.08994 * 109.52179 * 58.60945 * 13 12 10 28 28 H 1.09001 * 109.58786 * 294.85172 * 14 13 12 29 29 H 1.09000 * 109.70499 * 174.49439 * 14 13 12 30 30 H 1.08998 * 115.54512 * 34.41796 * 18 16 15 31 31 H 1.09000 * 117.49859 * 0.02562 * 19 18 16 32 32 H 1.08999 * 117.49900 * 145.01759 * 19 18 16 33 33 H 1.08998 * 117.50372 * 214.98309 * 20 18 16 34 34 H 1.09006 * 117.50059 * 359.97438 * 20 18 16 35 35 H 1.08997 * 109.58535 * 173.14183 * 21 15 14 36 36 H 1.08995 * 109.58574 * 293.56818 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0017 11 1 2.9686 -3.5517 -0.5880 12 6 2.4211 -4.0358 1.4393 13 6 3.2147 -5.3443 1.4387 14 6 2.3490 -6.4617 0.8482 15 7 1.8757 -6.0425 -0.4780 16 6 2.0771 -6.8237 -1.5576 17 8 1.6820 -6.4663 -2.6471 18 6 2.7944 -8.1410 -1.4112 19 6 4.1852 -8.2615 -2.0372 20 6 2.9938 -8.9810 -2.6742 21 6 1.1839 -4.7525 -0.6060 22 1 -0.4849 0.8401 0.0004 23 1 0.3554 -2.3881 0.0005 24 1 1.5092 -4.1643 2.0223 25 1 3.0261 -3.2443 1.8816 26 1 3.4932 -5.6013 2.4607 27 1 4.1148 -5.2241 0.8357 28 1 1.4947 -6.6451 1.4999 29 1 2.9393 -7.3732 0.7542 30 1 2.6155 -8.6723 -0.4764 31 1 4.5817 -7.3879 -2.5546 32 1 4.9212 -8.8724 -1.5145 33 1 2.9464 -10.0650 -2.5705 34 1 2.6058 -8.5812 -3.6111 35 1 1.0079 -4.5353 -1.6596 36 1 0.2327 -4.7938 -0.0754 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260141413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:07 Heat of formation + Delta-G solvation = -22.629942 kcal Electronic energy + Delta-G solvation = -17219.714376 eV Core-core repulsion = 14510.823288 eV Total energy + Delta-G solvation = -2708.891088 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37240 -39.00606 -36.98336 -36.22096 -33.82907 -32.77654 -30.28787 -27.00750 -26.05230 -24.22325 -23.39284 -23.28555 -21.36485 -19.83614 -19.14377 -18.60642 -17.02000 -16.77461 -16.24686 -15.96396 -15.52166 -15.22306 -14.99935 -14.79812 -14.67764 -13.95202 -13.68145 -13.42619 -12.97506 -12.89719 -12.42953 -12.34363 -12.22652 -12.10560 -11.85461 -11.74197 -11.67502 -11.47889 -11.35678 -10.94329 -10.81895 -9.69704 -9.06107 -7.98276 -5.28185 1.44358 1.46204 1.46576 1.56069 1.91585 2.54218 2.94666 3.34794 3.49967 3.76319 3.88233 3.97642 4.02922 4.06058 4.12295 4.22386 4.32146 4.34484 4.60096 4.75419 4.77444 4.81704 4.86940 4.92347 5.05140 5.08003 5.16706 5.26260 5.38830 5.41673 5.51122 5.57599 6.23456 6.43600 7.14303 7.29209 8.01402 8.26263 9.25418 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038689 B = 0.005436 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.543989 B = 5149.227346 C = 5351.916733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.736 5.736 10 C 0.167 3.833 11 H 0.029 0.971 12 C -0.128 4.128 13 C -0.123 4.123 14 C 0.104 3.896 15 N -0.601 5.601 16 C 0.529 3.471 17 O -0.598 6.598 18 C -0.196 4.196 19 C -0.140 4.140 20 C -0.152 4.152 21 C 0.118 3.882 22 H 0.252 0.748 23 H 0.373 0.627 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.161 0.839 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.844 -20.354 3.459 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.216 1.216 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.376 5.376 10 C 0.058 3.942 11 H 0.047 0.953 12 C -0.169 4.169 13 C -0.162 4.162 14 C -0.017 4.017 15 N -0.333 5.333 16 C 0.319 3.681 17 O -0.480 6.480 18 C -0.217 4.217 19 C -0.177 4.177 20 C -0.189 4.189 21 C -0.007 4.007 22 H 0.061 0.939 23 H 0.205 0.795 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.141 0.859 30 H 0.179 0.821 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.789 -20.043 2.901 22.077 hybrid contribution -0.485 1.691 -0.230 1.775 sum 8.304 -18.352 2.671 20.320 Atomic orbital electron populations 1.69828 1.06644 1.26092 1.59394 1.25568 0.96393 1.01080 1.03531 0.85068 0.78190 0.79720 0.76752 1.19088 1.22161 1.21633 1.19589 0.91286 0.85047 1.41300 0.90883 1.42499 1.05455 1.00786 1.88895 1.20541 0.93543 0.84798 0.95294 0.95313 1.22079 1.00026 0.97496 0.97263 1.21886 0.98002 0.93541 1.02756 1.22128 0.99291 0.98708 0.81528 1.48133 1.56947 1.18653 1.09532 1.20613 0.78448 0.86169 0.82834 1.90663 1.53772 1.75345 1.28222 1.22285 1.02388 0.94804 1.02196 1.23052 0.89738 1.02810 1.02097 1.23040 1.01228 0.99774 0.94845 1.21475 0.95326 0.82971 1.00888 0.93924 0.79509 0.92496 0.93506 0.87752 0.92054 0.89849 0.85946 0.82133 0.90409 0.84094 0.84736 0.90393 0.92472 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.24 -13.72 9.93 84.04 0.83 -12.89 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -38.55 5.12 -323.24 -1.66 -40.20 16 10 C 0.17 6.96 2.91 44.93 0.13 7.09 16 11 H 0.03 1.30 8.08 -2.38 -0.02 1.28 16 12 C -0.13 -4.30 5.47 30.62 0.17 -4.13 16 13 C -0.12 -2.74 6.08 30.67 0.19 -2.55 16 14 C 0.10 2.03 6.30 86.36 0.54 2.57 16 15 N -0.60 -17.68 2.98 -819.75 -2.44 -20.12 16 16 C 0.53 16.29 7.48 87.66 0.66 16.95 16 17 O -0.60 -24.67 15.67 -3.02 -0.05 -24.71 16 18 C -0.20 -3.70 4.96 -11.54 -0.06 -3.76 16 19 C -0.14 -2.20 10.24 30.62 0.31 -1.88 16 20 C -0.15 -2.64 10.05 30.62 0.31 -2.33 16 21 C 0.12 4.46 5.88 86.22 0.51 4.96 16 22 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 23 H 0.37 20.87 7.80 -92.71 -0.72 20.15 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.12 1.45 5.67 -2.39 -0.01 1.44 16 30 H 0.16 1.81 6.82 -2.39 -0.02 1.79 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.84 7.67 -2.38 -0.02 1.82 16 35 H 0.06 2.55 7.01 -2.39 -0.02 2.53 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -74.44 294.95 2.57 -71.87 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.34 Total: 24.13 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 4.06 Total: 0.19 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -3.81 Total: -120.46 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.71 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -74.44 2.57 -71.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260141413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.240 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds