Wall clock time and date at job start Sun Mar 29 2020 22:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.50699 * 120.00048 * 2 1 4 4 C 1.32994 * 119.99762 * 180.02562 * 2 1 3 5 5 C 1.47105 * 120.00250 * 352.85159 * 4 2 1 6 6 O 1.21607 * 119.99675 * 353.32432 * 5 4 2 7 7 N 1.34774 * 119.99846 * 173.32104 * 5 4 2 8 8 C 1.46968 * 120.59290 * 185.06966 * 7 5 4 9 9 C 1.53367 * 108.63479 * 235.25000 * 8 7 5 10 10 N 1.46968 * 108.63320 * 310.57619 * 9 8 7 11 11 C 1.36938 * 120.59020 * 235.20280 * 10 9 8 12 12 H 1.07996 * 119.99883 * 147.89053 * 11 10 9 13 13 C 1.38810 * 120.00204 * 327.61488 * 11 10 9 14 14 N 1.31623 * 119.99854 * 349.46994 * 13 11 10 15 15 Si 1.86803 * 120.00048 * 169.47708 * 13 11 10 16 16 H 1.48493 * 109.47459 * 59.99584 * 15 13 11 17 17 H 1.48503 * 109.46944 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46928 * 299.99480 * 15 13 11 19 19 C 1.46965 * 118.81672 * 55.47712 * 10 9 8 20 20 C 1.46965 * 120.59713 * 5.09025 * 7 5 4 21 21 H 1.08997 * 109.47439 * 264.29379 * 1 2 3 22 22 H 1.09000 * 109.47173 * 24.29651 * 1 2 3 23 23 H 1.09003 * 109.47419 * 144.29237 * 1 2 3 24 24 H 1.09008 * 109.46987 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.46825 * 299.99581 * 3 2 1 26 26 H 1.08999 * 109.47407 * 59.99912 * 3 2 1 27 27 H 1.08002 * 119.99947 * 172.86083 * 4 2 1 28 28 H 1.08991 * 109.61011 * 115.50372 * 8 7 5 29 29 H 1.09002 * 109.74955 * 355.07547 * 8 7 5 30 30 H 1.08993 * 109.61187 * 190.83124 * 9 8 7 31 31 H 1.09004 * 109.75223 * 70.39827 * 9 8 7 32 32 H 0.97001 * 119.99637 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.60841 * 64.26589 * 19 10 9 34 34 H 1.08999 * 109.61096 * 184.77575 * 19 10 9 35 35 H 1.08997 * 109.60896 * 244.49536 * 20 7 5 36 36 H 1.08999 * 109.61166 * 4.83708 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1718 -1.1518 -0.0005 5 6 1.4449 -2.4209 0.1574 6 8 0.2553 -2.4128 0.4095 7 7 2.0973 -3.5924 0.0227 8 6 1.3650 -4.8659 0.0675 9 6 1.9876 -5.7513 1.1541 10 7 3.4442 -5.7783 0.9602 11 6 4.1072 -6.9687 0.8242 12 1 4.9888 -7.0280 0.2032 13 6 3.6494 -8.0980 1.4891 14 7 2.7121 -7.9869 2.4064 15 14 4.3639 -9.7753 1.0821 16 1 5.8246 -9.7693 1.3490 17 1 3.7104 -10.8093 1.9243 18 1 4.1238 -10.0810 -0.3512 19 6 4.1774 -4.5052 0.9209 20 6 3.5539 -3.6195 -0.1712 21 1 -0.3634 -0.1022 1.0225 22 1 -0.3633 0.9366 -0.4228 23 1 -0.3634 -0.8345 -0.5998 24 1 3.3321 1.1059 -0.0005 25 1 1.9971 1.8766 -0.8901 26 1 1.9971 1.8767 0.8899 27 1 3.2456 -1.1554 -0.1168 28 1 1.4398 -5.3651 -0.8984 29 1 0.3171 -4.6800 0.3032 30 1 1.5892 -6.7627 1.0746 31 1 1.7572 -5.3436 2.1384 32 1 2.3920 -8.7761 2.8707 33 1 4.0991 -4.0080 1.8877 34 1 5.2253 -4.6935 0.6874 35 1 3.7844 -4.0300 -1.1543 36 1 3.9520 -2.6077 -0.0948 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265739617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:35 Heat of formation + Delta-G solvation = 9.013930 kcal Electronic energy + Delta-G solvation = -17332.423975 eV Core-core repulsion = 14624.905068 eV Total energy + Delta-G solvation = -2707.518906 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.64943 -37.00983 -35.18804 -33.83884 -31.14611 -30.47508 -28.05842 -27.70986 -26.47630 -23.63971 -22.82246 -21.03414 -19.26864 -17.75184 -17.22294 -16.15632 -15.14605 -14.99492 -14.73030 -14.03953 -13.68358 -13.64084 -13.51636 -13.32772 -13.19735 -12.50417 -12.30597 -12.10995 -11.88026 -11.59600 -11.32825 -11.08585 -10.78745 -10.66883 -10.54302 -10.18752 -9.96665 -9.81452 -9.10134 -8.99729 -8.55431 -8.09519 -6.62041 -5.82069 -3.33871 1.56233 3.35611 3.41291 3.41873 3.59354 3.67834 4.44671 4.78661 4.86915 5.12194 5.35989 5.39613 5.40773 5.45812 5.69015 5.72518 5.81629 5.83329 5.93871 5.95347 6.15035 6.24641 6.38306 6.43773 6.55263 6.60404 6.68780 6.76740 6.97256 7.33148 7.61823 7.73400 8.03991 8.41814 8.70049 9.15543 9.76110 10.35393 11.24697 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.056186 B = 0.005480 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.225666 B = 5108.542948 C = 5406.415743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.049 4.049 3 C -0.123 4.123 4 C -0.226 4.226 5 C 0.538 3.462 6 O -0.557 6.557 7 N -0.594 5.594 8 C 0.087 3.913 9 C 0.160 3.840 10 N -0.591 5.591 11 C -0.259 4.259 12 H 0.065 0.935 13 C 0.007 3.993 14 N -0.903 5.903 15 Si 0.907 3.093 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.130 3.870 20 C 0.089 3.911 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.127 0.873 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.023 0.977 32 H 0.256 0.744 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.073 14.000 -5.603 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.051 4.051 3 C -0.179 4.179 4 C -0.246 4.246 5 C 0.329 3.671 6 O -0.438 6.438 7 N -0.325 5.325 8 C -0.037 4.037 9 C 0.034 3.966 10 N -0.314 5.314 11 C -0.389 4.389 12 H 0.083 0.917 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.737 3.263 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.209 1.209 19 C 0.003 3.997 20 C -0.036 4.036 21 H 0.094 0.906 22 H 0.068 0.932 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.144 0.856 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.598 13.804 -5.359 14.820 hybrid contribution 0.586 -0.972 -0.103 1.139 sum -0.011 12.833 -5.462 13.947 Atomic orbital electron populations 1.21069 0.91083 1.01902 1.03566 1.22479 0.96811 0.94326 0.91451 1.20966 0.99806 0.94630 1.02539 1.22619 1.00310 0.92353 1.09330 1.18516 0.86769 0.84244 0.77547 1.90691 1.15638 1.87392 1.50128 1.47955 1.08298 1.06104 1.70181 1.22477 0.96498 0.83429 1.01254 1.21178 0.83603 0.99052 0.92815 1.43955 1.01973 1.00629 1.84862 1.19135 1.10851 0.86281 1.22607 0.91720 1.25228 0.99115 0.99131 0.95771 1.69958 1.31140 1.28697 1.24873 0.86311 0.78686 0.83576 0.77770 1.20803 1.21554 1.20888 1.21387 0.95546 0.88037 0.94732 1.22504 0.79945 1.00417 1.00734 0.90567 0.93216 0.89335 0.91541 0.91059 0.90674 0.85552 0.92381 0.90213 0.88344 0.95903 0.93366 0.95895 0.91557 0.91822 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 8.47 36.00 0.30 -1.26 16 2 C -0.05 -0.61 6.11 -101.17 -0.62 -1.23 16 3 C -0.12 -1.07 10.10 36.01 0.36 -0.71 16 4 C -0.23 -3.24 8.94 -37.80 -0.34 -3.58 16 5 C 0.54 9.94 7.48 -12.66 -0.09 9.84 16 6 O -0.56 -11.54 12.72 5.27 0.07 -11.47 16 7 N -0.59 -11.37 2.95 -173.61 -0.51 -11.88 16 8 C 0.09 1.82 6.59 -3.60 -0.02 1.80 16 9 C 0.16 3.92 5.45 -3.60 -0.02 3.90 16 10 N -0.59 -14.75 2.95 -171.77 -0.51 -15.26 16 11 C -0.26 -6.98 9.57 -15.06 -0.14 -7.12 16 12 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 13 C 0.01 0.18 5.05 -17.43 -0.09 0.10 16 14 N -0.90 -26.09 11.08 55.49 0.62 -25.47 16 15 Si 0.91 21.36 29.57 -169.99 -5.03 16.34 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.13 2.66 6.70 -3.37 -0.02 2.64 16 20 C 0.09 1.51 6.50 -3.37 -0.02 1.49 16 21 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 22 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 23 H 0.09 1.36 6.17 -51.93 -0.32 1.04 16 24 H 0.07 0.52 7.82 -51.92 -0.41 0.12 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.13 1.54 5.71 -52.49 -0.30 1.24 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.67 7.00 -51.93 -0.36 1.31 16 30 H 0.10 2.64 6.09 -51.93 -0.32 2.33 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.02 5.34 -51.93 -0.28 0.74 16 LS Contribution 288.73 15.07 4.35 4.35 Total: -1.00 -30.91 288.73 -7.03 -37.93 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.32 Total: -0.41 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.70 Total: 5.87 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.40 Total: -52.61 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.91 -7.03 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265739617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.948 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds