Wall clock time and date at job start Sun Mar 29 2020 22:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.50699 * 120.00048 * 2 1 4 4 C 1.32994 * 119.99762 * 180.02562 * 2 1 3 5 5 C 1.47105 * 120.00250 * 352.85159 * 4 2 1 6 6 O 1.21607 * 119.99675 * 353.32432 * 5 4 2 7 7 N 1.34774 * 119.99846 * 173.32104 * 5 4 2 8 8 C 1.46968 * 120.59290 * 185.06966 * 7 5 4 9 9 C 1.53367 * 108.63479 * 235.25000 * 8 7 5 10 10 N 1.46968 * 108.63320 * 310.57619 * 9 8 7 11 11 C 1.36938 * 120.59020 * 235.20280 * 10 9 8 12 12 H 1.07996 * 119.99883 * 147.89053 * 11 10 9 13 13 C 1.38810 * 120.00204 * 327.61488 * 11 10 9 14 14 N 1.31623 * 119.99854 * 349.46994 * 13 11 10 15 15 Si 1.86803 * 120.00048 * 169.47708 * 13 11 10 16 16 H 1.48493 * 109.47459 * 59.99584 * 15 13 11 17 17 H 1.48503 * 109.46944 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46928 * 299.99480 * 15 13 11 19 19 C 1.46965 * 118.81672 * 55.47712 * 10 9 8 20 20 C 1.46965 * 120.59713 * 5.09025 * 7 5 4 21 21 H 1.08997 * 109.47439 * 264.29379 * 1 2 3 22 22 H 1.09000 * 109.47173 * 24.29651 * 1 2 3 23 23 H 1.09003 * 109.47419 * 144.29237 * 1 2 3 24 24 H 1.09008 * 109.46987 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.46825 * 299.99581 * 3 2 1 26 26 H 1.08999 * 109.47407 * 59.99912 * 3 2 1 27 27 H 1.08002 * 119.99947 * 172.86083 * 4 2 1 28 28 H 1.08991 * 109.61011 * 115.50372 * 8 7 5 29 29 H 1.09002 * 109.74955 * 355.07547 * 8 7 5 30 30 H 1.08993 * 109.61187 * 190.83124 * 9 8 7 31 31 H 1.09004 * 109.75223 * 70.39827 * 9 8 7 32 32 H 0.97001 * 119.99637 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.60841 * 64.26589 * 19 10 9 34 34 H 1.08999 * 109.61096 * 184.77575 * 19 10 9 35 35 H 1.08997 * 109.60896 * 244.49536 * 20 7 5 36 36 H 1.08999 * 109.61166 * 4.83708 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1718 -1.1518 -0.0005 5 6 1.4449 -2.4209 0.1574 6 8 0.2553 -2.4128 0.4095 7 7 2.0973 -3.5924 0.0227 8 6 1.3650 -4.8659 0.0675 9 6 1.9876 -5.7513 1.1541 10 7 3.4442 -5.7783 0.9602 11 6 4.1072 -6.9687 0.8242 12 1 4.9888 -7.0280 0.2032 13 6 3.6494 -8.0980 1.4891 14 7 2.7121 -7.9869 2.4064 15 14 4.3639 -9.7753 1.0821 16 1 5.8246 -9.7693 1.3490 17 1 3.7104 -10.8093 1.9243 18 1 4.1238 -10.0810 -0.3512 19 6 4.1774 -4.5052 0.9209 20 6 3.5539 -3.6195 -0.1712 21 1 -0.3634 -0.1022 1.0225 22 1 -0.3633 0.9366 -0.4228 23 1 -0.3634 -0.8345 -0.5998 24 1 3.3321 1.1059 -0.0005 25 1 1.9971 1.8766 -0.8901 26 1 1.9971 1.8767 0.8899 27 1 3.2456 -1.1554 -0.1168 28 1 1.4398 -5.3651 -0.8984 29 1 0.3171 -4.6800 0.3032 30 1 1.5892 -6.7627 1.0746 31 1 1.7572 -5.3436 2.1384 32 1 2.3920 -8.7761 2.8707 33 1 4.0991 -4.0080 1.8877 34 1 5.2253 -4.6935 0.6874 35 1 3.7844 -4.0300 -1.1543 36 1 3.9520 -2.6077 -0.0948 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265739617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:34 Heat of formation + Delta-G solvation = -10.163909 kcal Electronic energy + Delta-G solvation = -17333.255588 eV Core-core repulsion = 14624.905068 eV Total energy + Delta-G solvation = -2708.350520 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.09644 -38.62565 -36.32200 -35.60324 -33.06663 -32.14854 -29.37706 -28.62040 -28.08703 -25.44926 -24.47688 -22.60079 -20.81700 -19.18631 -18.65726 -17.88490 -16.77847 -16.56412 -16.29607 -15.47739 -15.35078 -15.05333 -14.87923 -14.74290 -14.72071 -13.84764 -13.45129 -13.27945 -13.12272 -13.06922 -12.75831 -12.58226 -12.49149 -12.36154 -12.17880 -12.01025 -11.83507 -11.64701 -10.61223 -10.50143 -10.12177 -9.64622 -8.60323 -7.87841 -5.44107 0.45430 1.48265 1.50614 1.57333 2.14668 2.33817 2.50824 3.27801 3.58881 3.67976 3.93717 4.16121 4.25110 4.38173 4.39820 4.51419 4.59256 4.66390 4.73479 4.80798 4.84588 4.89636 4.95167 5.04604 5.09860 5.22846 5.25153 5.47001 5.58391 5.60653 5.64591 5.77017 6.37197 6.61374 7.09708 7.27026 7.77259 8.33166 9.16572 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.056186 B = 0.005480 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.225666 B = 5108.542948 C = 5406.415743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.027 4.027 3 C -0.121 4.121 4 C -0.250 4.250 5 C 0.530 3.470 6 O -0.590 6.590 7 N -0.604 5.604 8 C 0.103 3.897 9 C 0.172 3.828 10 N -0.610 5.610 11 C -0.267 4.267 12 H 0.075 0.925 13 C -0.049 4.049 14 N -0.940 5.940 15 Si 0.974 3.026 16 H -0.272 1.272 17 H -0.297 1.297 18 H -0.275 1.275 19 C 0.125 3.875 20 C 0.099 3.901 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.154 0.846 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.069 0.931 31 H -0.012 1.012 32 H 0.251 0.749 33 H 0.012 0.988 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 16.195 -7.055 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.029 4.029 3 C -0.177 4.177 4 C -0.270 4.270 5 C 0.324 3.676 6 O -0.474 6.474 7 N -0.335 5.335 8 C -0.022 4.022 9 C 0.046 3.954 10 N -0.333 5.333 11 C -0.397 4.397 12 H 0.092 0.908 13 C -0.244 4.244 14 N -0.585 5.585 15 Si 0.802 3.198 16 H -0.198 1.198 17 H -0.223 1.223 18 H -0.201 1.201 19 C -0.001 4.001 20 C -0.024 4.024 21 H 0.082 0.918 22 H 0.100 0.900 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.171 0.829 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.007 0.993 32 H 0.060 0.940 33 H 0.030 0.970 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.095 16.040 -6.835 17.470 hybrid contribution 0.016 -1.526 0.368 1.570 sum 1.111 14.514 -6.467 15.928 Atomic orbital electron populations 1.21055 0.92018 1.02427 1.02468 1.22911 0.96523 0.95696 0.87778 1.21065 1.00105 0.92412 1.04093 1.22583 1.01344 0.90505 1.12578 1.19304 0.86680 0.85249 0.76401 1.90680 1.17288 1.87913 1.51519 1.48049 1.09184 1.05522 1.70723 1.22053 0.96061 0.84237 0.99858 1.20846 0.84328 0.97888 0.92381 1.44210 1.02170 1.01899 1.85037 1.19544 1.10794 0.87250 1.22090 0.90754 1.26032 0.99745 1.02771 0.95889 1.70145 1.32861 1.29169 1.26342 0.85247 0.78137 0.78943 0.77500 1.19771 1.22332 1.20093 1.21594 0.96339 0.86559 0.95600 1.22505 0.78395 1.02012 0.99496 0.91821 0.90037 0.92116 0.90108 0.88968 0.89278 0.82877 0.91835 0.90928 0.91326 0.99349 0.94022 0.96963 0.90020 0.90907 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 8.47 71.23 0.60 -2.41 16 2 C -0.03 -0.59 6.11 -17.62 -0.11 -0.70 16 3 C -0.12 -1.53 10.10 71.24 0.72 -0.81 16 4 C -0.25 -6.51 8.94 23.43 0.21 -6.30 16 5 C 0.53 19.20 7.48 86.57 0.65 19.85 16 6 O -0.59 -24.87 12.72 -4.05 -0.05 -24.92 16 7 N -0.60 -22.72 2.95 -821.44 -2.42 -25.14 16 8 C 0.10 4.40 6.59 86.41 0.57 4.97 16 9 C 0.17 8.83 5.45 86.41 0.47 9.30 16 10 N -0.61 -30.74 2.95 -697.35 -2.06 -32.79 16 11 C -0.27 -14.41 9.57 84.03 0.80 -13.60 16 12 H 0.07 3.80 7.85 -2.91 -0.02 3.78 16 13 C -0.05 -2.72 5.05 84.86 0.43 -2.29 16 14 N -0.94 -56.22 11.08 21.65 0.24 -55.98 16 15 Si 0.97 44.31 29.57 68.60 2.03 46.34 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 19 C 0.13 4.98 6.70 86.56 0.58 5.56 16 20 C 0.10 3.15 6.50 86.56 0.56 3.71 16 21 H 0.06 1.73 8.03 -2.39 -0.02 1.71 16 22 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 23 H 0.06 1.85 6.17 -2.39 -0.01 1.84 16 24 H 0.08 0.85 7.82 -2.38 -0.02 0.83 16 25 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.15 3.06 5.71 -2.91 -0.02 3.04 16 28 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.07 3.18 7.00 -2.39 -0.02 3.17 16 30 H 0.07 3.90 6.09 -2.39 -0.01 3.88 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 2.96 7.93 -2.39 -0.02 2.94 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.12 2.72 5.34 -2.39 -0.01 2.71 16 Total: -1.00 -69.47 288.73 4.29 -65.18 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.06 Total: 10.03 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 5.49 Total: 17.29 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -4.24 Total: -113.91 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -69.47 4.29 -65.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265739617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.019 kcal (2) G-P(sol) polarization free energy of solvation -69.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds