Wall clock time and date at job start Sun Mar 29 2020 22:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33002 * 119.99878 * 2 1 4 4 C 1.50700 * 119.99914 * 0.02562 * 3 2 1 5 5 C 1.47102 * 119.99856 * 180.02562 * 3 2 1 6 6 O 1.21612 * 120.00136 * 257.62335 * 5 3 2 7 7 N 1.34781 * 119.99801 * 77.63172 * 5 3 2 8 8 C 1.46960 * 120.59305 * 174.94721 * 7 5 3 9 9 C 1.53369 * 108.63691 * 235.24365 * 8 7 5 10 10 N 1.46965 * 108.63225 * 310.57621 * 9 8 7 11 11 C 1.36930 * 120.59302 * 235.19860 * 10 9 8 12 12 H 1.08007 * 119.99873 * 24.21181 * 11 10 9 13 13 C 1.38807 * 120.00470 * 203.93550 * 11 10 9 14 14 N 1.31622 * 120.00501 * 218.21416 * 13 11 10 15 15 Si 1.86810 * 119.99828 * 38.21323 * 13 11 10 16 16 H 1.48496 * 109.47032 * 94.76576 * 15 13 11 17 17 H 1.48497 * 109.47183 * 214.76795 * 15 13 11 18 18 H 1.48499 * 109.46489 * 334.76934 * 15 13 11 19 19 C 1.46966 * 118.81407 * 55.47812 * 10 9 8 20 20 C 1.46965 * 120.59433 * 354.96346 * 7 5 3 21 21 H 1.08998 * 109.47479 * 59.99942 * 1 2 3 22 22 H 1.09006 * 109.46678 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47137 * 299.99264 * 1 2 3 24 24 H 1.07999 * 120.00224 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47067 * 271.68401 * 4 3 2 26 26 H 1.09002 * 109.46568 * 31.67806 * 4 3 2 27 27 H 1.08996 * 109.47247 * 151.67827 * 4 3 2 28 28 H 1.09002 * 109.61328 * 115.49807 * 8 7 5 29 29 H 1.09006 * 109.74922 * 355.07609 * 8 7 5 30 30 H 1.08996 * 109.61175 * 190.82581 * 9 8 7 31 31 H 1.09006 * 109.74756 * 70.40384 * 9 8 7 32 32 H 0.96994 * 120.00237 * 179.97438 * 14 13 11 33 33 H 1.08994 * 109.60943 * 64.26035 * 19 10 9 34 34 H 1.09000 * 109.60945 * 184.77956 * 19 10 9 35 35 H 1.09001 * 109.60846 * 244.49776 * 20 7 5 36 36 H 1.08995 * 109.61182 * 4.83865 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 3.6429 1.1518 -0.0006 6 8 4.2514 1.3773 1.0279 7 7 4.3164 0.9021 -1.1411 8 6 5.7816 1.0071 -1.1828 9 6 6.1716 1.9793 -2.3030 10 7 5.4537 1.5974 -3.5272 11 6 6.1378 1.3445 -4.6861 12 1 7.1732 1.0395 -4.6464 13 6 5.4992 1.4746 -5.9116 14 7 5.7536 0.6206 -6.8804 15 14 4.2785 2.8618 -6.1862 16 1 4.9712 4.0126 -6.8194 17 1 3.1862 2.3912 -7.0753 18 1 3.7079 3.2841 -4.8819 19 6 3.9880 1.4978 -3.4870 20 6 3.5985 0.5202 -2.3653 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 2.0470 -0.9353 -0.0004 25 1 1.2101 2.7567 -1.0265 26 1 0.4795 2.3340 0.5406 27 1 2.0203 3.2238 0.4880 28 1 6.2132 0.0264 -1.3829 29 1 6.1514 1.3815 -0.2282 30 1 7.2462 1.9249 -2.4769 31 1 5.8978 2.9959 -2.0203 32 1 5.3071 0.7113 -7.7366 33 1 3.5600 2.4797 -3.2850 34 1 3.6203 1.1253 -4.4431 35 1 3.8746 -0.4952 -2.6496 36 1 2.5239 0.5716 -2.1904 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267644554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:15 Heat of formation + Delta-G solvation = 13.031116 kcal Electronic energy + Delta-G solvation = -17654.172023 eV Core-core repulsion = 14946.827315 eV Total energy + Delta-G solvation = -2707.344708 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.87229 -37.08442 -35.62840 -33.86507 -31.60392 -30.68463 -29.37963 -27.41387 -26.00110 -23.62653 -23.19443 -21.53797 -19.61200 -18.17376 -16.96192 -16.17159 -15.94805 -15.20178 -14.72324 -14.31165 -14.03382 -13.84394 -13.74064 -13.40243 -12.82959 -12.66324 -12.46928 -12.31816 -12.18047 -12.04369 -11.88274 -11.38267 -11.05561 -10.83239 -10.46157 -10.36449 -10.21034 -9.57223 -9.48764 -8.89055 -8.75920 -8.22900 -7.08110 -6.12328 -3.28593 1.79346 2.83953 3.32008 3.40775 3.46155 3.51318 4.49255 4.62183 4.83069 4.92741 5.15773 5.21863 5.27745 5.43652 5.57339 5.61818 5.63535 5.64827 5.77128 5.84307 5.88974 5.92824 6.06382 6.09252 6.24143 6.39236 6.49163 6.56206 6.58159 6.73619 6.92491 7.75010 7.83441 8.20659 8.41642 8.84817 9.64280 10.03571 11.01663 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.007853 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.434582 B = 3564.883489 C = 4037.181359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.129 4.129 3 C -0.155 4.155 4 C -0.106 4.106 5 C 0.551 3.449 6 O -0.554 6.554 7 N -0.592 5.592 8 C 0.095 3.905 9 C 0.133 3.867 10 N -0.600 5.600 11 C -0.275 4.275 12 H 0.084 0.916 13 C 0.039 3.961 14 N -0.877 5.877 15 Si 0.831 3.169 16 H -0.293 1.293 17 H -0.293 1.293 18 H -0.257 1.257 19 C 0.133 3.867 20 C 0.086 3.914 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.799 -0.068 10.904 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.148 4.148 3 C -0.158 4.158 4 C -0.163 4.163 5 C 0.339 3.661 6 O -0.434 6.434 7 N -0.324 5.324 8 C -0.029 4.029 9 C 0.007 3.993 10 N -0.323 5.323 11 C -0.402 4.402 12 H 0.101 0.899 13 C -0.163 4.163 14 N -0.517 5.517 15 Si 0.658 3.342 16 H -0.220 1.220 17 H -0.220 1.220 18 H -0.182 1.182 19 C 0.006 3.994 20 C -0.039 4.039 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.131 0.869 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.447 -0.027 11.230 14.675 hybrid contribution -0.593 0.775 -0.535 1.113 sum -10.040 0.748 10.696 14.688 Atomic orbital electron populations 1.20858 0.92199 1.02578 1.02250 1.23209 0.96446 0.96783 0.98335 1.21426 0.93029 0.97089 1.04230 1.20703 0.99400 0.93673 1.02516 1.18577 0.87688 0.76569 0.83278 1.90751 1.69911 1.50828 1.31897 1.48059 1.07826 1.66547 1.09921 1.22227 0.78956 1.01124 1.00566 1.21331 0.97172 0.94554 0.86280 1.44323 1.01035 1.79558 1.07405 1.18783 0.98041 1.41150 0.82254 0.89851 1.25135 0.97335 0.98199 0.95604 1.70140 1.43892 1.32075 1.05551 0.87687 0.81371 0.86519 0.78660 1.22029 1.22009 1.18186 1.21777 0.85378 0.95785 0.96424 1.22605 0.95907 1.00296 0.85056 0.91049 0.91774 0.91229 0.86877 0.90754 0.90974 0.91542 0.91424 0.89734 0.90656 0.95615 0.92716 0.94962 0.90481 0.90980 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 8.93 36.00 0.32 -0.73 16 2 C -0.13 -1.51 8.98 -36.13 -0.32 -1.83 16 3 C -0.15 -2.16 4.20 -102.84 -0.43 -2.59 16 4 C -0.11 -1.23 9.53 36.01 0.34 -0.89 16 5 C 0.55 9.69 7.06 -12.66 -0.09 9.60 16 6 O -0.55 -11.40 16.53 5.27 0.09 -11.31 16 7 N -0.59 -10.53 2.95 -173.61 -0.51 -11.04 16 8 C 0.09 1.71 6.58 -3.60 -0.02 1.68 16 9 C 0.13 2.63 6.67 -3.60 -0.02 2.61 16 10 N -0.60 -13.85 2.75 -171.77 -0.47 -14.32 16 11 C -0.28 -7.40 9.86 -15.06 -0.15 -7.55 16 12 H 0.08 2.38 8.04 -52.48 -0.42 1.96 16 13 C 0.04 1.07 4.81 -17.43 -0.08 0.99 16 14 N -0.88 -25.69 13.97 55.49 0.78 -24.91 16 15 Si 0.83 20.42 26.39 -169.99 -4.49 15.93 16 16 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 18 H -0.26 -5.99 4.93 56.52 0.28 -5.71 16 19 C 0.13 2.77 4.56 -3.37 -0.02 2.76 16 20 C 0.09 1.48 6.42 -3.37 -0.02 1.46 16 21 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.54 7.40 -51.93 -0.38 0.16 16 24 H 0.11 1.34 8.05 -52.49 -0.42 0.92 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.67 6.56 -51.93 -0.34 0.33 16 27 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.48 7.03 -51.93 -0.36 1.12 16 30 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.03 0.68 6.81 -51.93 -0.35 0.33 16 34 H 0.08 1.71 5.37 -51.93 -0.28 1.43 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.14 5.71 -51.93 -0.30 0.84 16 LS Contribution 287.42 15.07 4.33 4.33 Total: -1.00 -31.32 287.42 -6.26 -37.58 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.49 Total: -1.77 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -0.50 Total: 5.50 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.21 Total: -50.28 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.49 Total: 15.93 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.32 -6.26 -37.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267644554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.615 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds