Wall clock time and date at job start Sun Mar 29 2020 22:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33002 * 119.99878 * 2 1 4 4 C 1.50700 * 119.99914 * 0.02562 * 3 2 1 5 5 C 1.47102 * 119.99856 * 180.02562 * 3 2 1 6 6 O 1.21612 * 120.00136 * 257.62335 * 5 3 2 7 7 N 1.34781 * 119.99801 * 77.63172 * 5 3 2 8 8 C 1.46960 * 120.59305 * 174.94721 * 7 5 3 9 9 C 1.53369 * 108.63691 * 235.24365 * 8 7 5 10 10 N 1.46965 * 108.63225 * 310.57621 * 9 8 7 11 11 C 1.36930 * 120.59302 * 235.19860 * 10 9 8 12 12 H 1.08007 * 119.99873 * 24.21181 * 11 10 9 13 13 C 1.38807 * 120.00470 * 203.93550 * 11 10 9 14 14 N 1.31622 * 120.00501 * 218.21416 * 13 11 10 15 15 Si 1.86810 * 119.99828 * 38.21323 * 13 11 10 16 16 H 1.48496 * 109.47032 * 94.76576 * 15 13 11 17 17 H 1.48497 * 109.47183 * 214.76795 * 15 13 11 18 18 H 1.48499 * 109.46489 * 334.76934 * 15 13 11 19 19 C 1.46966 * 118.81407 * 55.47812 * 10 9 8 20 20 C 1.46965 * 120.59433 * 354.96346 * 7 5 3 21 21 H 1.08998 * 109.47479 * 59.99942 * 1 2 3 22 22 H 1.09006 * 109.46678 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47137 * 299.99264 * 1 2 3 24 24 H 1.07999 * 120.00224 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47067 * 271.68401 * 4 3 2 26 26 H 1.09002 * 109.46568 * 31.67806 * 4 3 2 27 27 H 1.08996 * 109.47247 * 151.67827 * 4 3 2 28 28 H 1.09002 * 109.61328 * 115.49807 * 8 7 5 29 29 H 1.09006 * 109.74922 * 355.07609 * 8 7 5 30 30 H 1.08996 * 109.61175 * 190.82581 * 9 8 7 31 31 H 1.09006 * 109.74756 * 70.40384 * 9 8 7 32 32 H 0.96994 * 120.00237 * 179.97438 * 14 13 11 33 33 H 1.08994 * 109.60943 * 64.26035 * 19 10 9 34 34 H 1.09000 * 109.60945 * 184.77956 * 19 10 9 35 35 H 1.09001 * 109.60846 * 244.49776 * 20 7 5 36 36 H 1.08995 * 109.61182 * 4.83865 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 3.6429 1.1518 -0.0006 6 8 4.2514 1.3773 1.0279 7 7 4.3164 0.9021 -1.1411 8 6 5.7816 1.0071 -1.1828 9 6 6.1716 1.9793 -2.3030 10 7 5.4537 1.5974 -3.5272 11 6 6.1378 1.3445 -4.6861 12 1 7.1732 1.0395 -4.6464 13 6 5.4992 1.4746 -5.9116 14 7 5.7536 0.6206 -6.8804 15 14 4.2785 2.8618 -6.1862 16 1 4.9712 4.0126 -6.8194 17 1 3.1862 2.3912 -7.0753 18 1 3.7079 3.2841 -4.8819 19 6 3.9880 1.4978 -3.4870 20 6 3.5985 0.5202 -2.3653 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 2.0470 -0.9353 -0.0004 25 1 1.2101 2.7567 -1.0265 26 1 0.4795 2.3340 0.5406 27 1 2.0203 3.2238 0.4880 28 1 6.2132 0.0264 -1.3829 29 1 6.1514 1.3815 -0.2282 30 1 7.2462 1.9249 -2.4769 31 1 5.8978 2.9959 -2.0203 32 1 5.3071 0.7113 -7.7366 33 1 3.5600 2.4797 -3.2850 34 1 3.6203 1.1253 -4.4431 35 1 3.8746 -0.4952 -2.6496 36 1 2.5239 0.5716 -2.1904 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267644554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:14 Heat of formation + Delta-G solvation = -7.140461 kcal Electronic energy + Delta-G solvation = -17655.046728 eV Core-core repulsion = 14946.827315 eV Total energy + Delta-G solvation = -2708.219413 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25565 -38.67324 -36.66710 -35.57715 -33.51768 -32.25036 -30.24337 -28.98928 -27.11285 -25.28688 -24.77581 -23.00078 -21.04770 -19.62784 -18.44199 -17.74291 -17.28805 -16.79331 -16.33784 -16.03531 -15.38456 -15.33061 -14.83372 -14.60275 -14.49135 -14.16607 -13.77596 -13.48481 -13.40774 -13.32843 -12.88116 -12.79498 -12.55259 -12.24311 -12.19310 -12.14282 -11.91988 -11.40364 -10.89534 -10.68659 -9.92901 -9.85211 -8.94864 -8.23670 -5.37507 0.81506 1.35573 1.48069 1.50359 1.54048 2.05117 2.44489 2.91092 3.35941 3.48205 4.01089 4.08140 4.12963 4.28941 4.36045 4.41364 4.49517 4.55235 4.58040 4.71283 4.75611 4.82401 4.88974 4.92221 4.96396 5.06409 5.13069 5.16887 5.42977 5.54144 5.69030 5.82549 6.08537 6.38304 6.86974 7.04760 7.60962 8.02826 8.93722 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.007853 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.434582 B = 3564.883489 C = 4037.181359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 C -0.186 4.186 4 C -0.101 4.101 5 C 0.550 3.450 6 O -0.590 6.590 7 N -0.597 5.597 8 C 0.102 3.898 9 C 0.134 3.866 10 N -0.613 5.613 11 C -0.268 4.268 12 H 0.053 0.947 13 C -0.010 4.010 14 N -0.924 5.924 15 Si 0.896 3.104 16 H -0.305 1.305 17 H -0.291 1.291 18 H -0.235 1.235 19 C 0.129 3.871 20 C 0.099 3.901 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.038 0.962 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.458 0.282 12.067 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.125 4.125 3 C -0.189 4.189 4 C -0.157 4.157 5 C 0.340 3.660 6 O -0.472 6.472 7 N -0.328 5.328 8 C -0.022 4.022 9 C 0.008 3.992 10 N -0.337 5.337 11 C -0.397 4.397 12 H 0.070 0.930 13 C -0.208 4.208 14 N -0.567 5.567 15 Si 0.723 3.277 16 H -0.234 1.234 17 H -0.218 1.218 18 H -0.159 1.159 19 C 0.003 3.997 20 C -0.025 4.025 21 H 0.102 0.898 22 H 0.096 0.904 23 H 0.101 0.899 24 H 0.127 0.873 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.135 0.336 12.428 17.373 hybrid contribution 0.295 0.584 -0.823 1.052 sum -11.840 0.919 11.604 16.604 Atomic orbital electron populations 1.20956 0.89455 1.04014 1.03400 1.23519 0.98348 0.95759 0.94841 1.21401 0.90700 0.98974 1.07848 1.20718 0.99861 0.91950 1.03204 1.19231 0.89330 0.75078 0.82330 1.90725 1.71155 1.52249 1.33041 1.48152 1.07606 1.66663 1.10365 1.22050 0.79771 1.00495 0.99874 1.21402 0.97113 0.95156 0.85507 1.44427 1.02182 1.80009 1.07050 1.18710 0.97120 1.39986 0.83868 0.92971 1.25621 1.00034 0.99728 0.95461 1.70214 1.46464 1.33773 1.06219 0.86665 0.79209 0.82592 0.79273 1.23383 1.21782 1.15864 1.21835 0.83842 0.96846 0.97208 1.22440 0.97655 0.98779 0.83581 0.89757 0.90359 0.89885 0.87294 0.90048 0.88388 0.93139 0.91556 0.89254 0.90590 0.95156 0.92745 0.94381 0.91830 0.91391 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 8.93 71.23 0.64 -0.90 16 2 C -0.11 -2.10 8.98 24.52 0.22 -1.88 16 3 C -0.19 -4.66 4.20 -18.70 -0.08 -4.74 16 4 C -0.10 -2.02 9.53 71.24 0.68 -1.35 16 5 C 0.55 18.45 7.06 86.57 0.61 19.06 16 6 O -0.59 -23.78 16.53 -4.07 -0.07 -23.84 16 7 N -0.60 -20.29 2.95 -821.43 -2.42 -22.71 16 8 C 0.10 3.60 6.58 86.42 0.57 4.16 16 9 C 0.13 5.22 6.67 86.41 0.58 5.80 16 10 N -0.61 -27.91 2.75 -697.35 -1.92 -29.83 16 11 C -0.27 -14.60 9.86 84.03 0.83 -13.77 16 12 H 0.05 3.10 8.04 -2.91 -0.02 3.08 16 13 C -0.01 -0.57 4.81 84.86 0.41 -0.16 16 14 N -0.92 -55.17 13.97 21.65 0.30 -54.87 16 15 Si 0.90 42.30 26.39 68.60 1.81 44.11 16 16 H -0.31 -14.98 7.11 99.48 0.71 -14.28 16 17 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 18 H -0.24 -10.13 4.93 99.48 0.49 -9.64 16 19 C 0.13 5.11 4.56 86.56 0.39 5.51 16 20 C 0.10 3.22 6.42 86.56 0.56 3.77 16 21 H 0.08 0.93 8.10 -2.39 -0.02 0.91 16 22 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 23 H 0.08 0.90 7.40 -2.39 -0.02 0.88 16 24 H 0.11 2.25 8.05 -2.91 -0.02 2.23 16 25 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.10 1.42 6.56 -2.39 -0.02 1.40 16 27 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.09 3.08 7.03 -2.38 -0.02 3.06 16 30 H 0.08 2.90 7.92 -2.39 -0.02 2.88 16 31 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.04 1.49 6.81 -2.39 -0.02 1.47 16 34 H 0.06 2.71 5.37 -2.39 -0.01 2.70 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.11 2.85 5.71 -2.39 -0.01 2.84 16 Total: -1.00 -67.66 287.42 3.95 -63.71 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.84 Total: 7.93 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 5.40 Total: 15.50 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -4.03 Total: -107.41 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.07 Total: -23.84 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.81 Total: 44.11 kcal Total: -67.66 3.95 -63.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267644554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.568 kcal (2) G-P(sol) polarization free energy of solvation -67.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds