Wall clock time and date at job start Sun Mar 29 2020 22:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00119 * 2 1 4 4 N 1.46495 * 109.47449 * 124.99688 * 3 2 1 5 5 C 1.34780 * 120.00447 * 89.99430 * 4 3 2 6 6 O 1.21582 * 120.00353 * 186.00907 * 5 4 3 7 7 N 1.34777 * 119.99377 * 6.01507 * 5 4 3 8 8 C 1.46504 * 119.99590 * 174.70416 * 7 5 4 9 9 C 1.52995 * 109.46798 * 180.27032 * 8 7 5 10 10 C 1.50705 * 109.46980 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99921 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99983 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00250 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99787 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47014 * 60.00522 * 14 12 10 16 16 H 1.48503 * 109.46756 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47337 * 300.00266 * 14 12 10 18 18 C 1.46504 * 119.99982 * 269.99995 * 4 3 2 19 19 C 1.52998 * 117.50235 * 196.48225 * 18 4 3 20 20 C 1.53003 * 117.49962 * 127.81882 * 18 4 3 21 21 H 1.08001 * 119.99845 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.00100 * 179.97438 * 1 2 3 23 23 H 1.08001 * 119.99845 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.46839 * 4.99204 * 3 2 1 25 25 H 1.08999 * 109.47064 * 244.99595 * 3 2 1 26 26 H 0.97001 * 120.00175 * 354.97512 * 7 5 4 27 27 H 1.08996 * 109.47293 * 300.27134 * 8 7 5 28 28 H 1.09003 * 109.47033 * 60.27653 * 8 7 5 29 29 H 1.09002 * 109.47958 * 300.00158 * 9 8 7 30 30 H 1.09003 * 109.47259 * 60.00800 * 9 8 7 31 31 H 0.97000 * 120.00015 * 180.02562 * 13 12 10 32 32 H 1.09002 * 115.54551 * 342.15123 * 18 4 3 33 33 H 1.09006 * 117.49249 * 359.97438 * 19 18 4 34 34 H 1.08997 * 117.50172 * 145.01838 * 19 18 4 35 35 H 1.09004 * 117.49771 * 214.97845 * 20 18 4 36 36 H 1.08995 * 117.49878 * 359.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2497 0.8661 0.9826 6 8 4.9868 0.7866 1.9462 7 7 4.6884 0.4886 -0.2346 8 6 6.0868 0.0924 -0.4186 9 6 6.3226 -0.2805 -1.8836 10 6 7.7612 -0.6874 -2.0731 11 1 8.4393 -0.6810 -1.2327 12 6 8.2116 -1.0677 -3.3195 13 7 7.3860 -1.0749 -4.3431 14 14 9.9950 -1.5713 -3.5545 15 1 10.2967 -2.7416 -2.6917 16 1 10.2241 -1.9322 -4.9767 17 1 10.8821 -0.4401 -3.1823 18 6 2.5588 1.8651 2.4248 19 6 3.6439 2.2275 3.4406 20 6 2.7739 0.9871 3.6593 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1316 0.0894 25 1 2.6214 1.4025 -0.9313 26 1 4.0793 0.4829 -0.9895 27 1 6.7385 0.9223 -0.1455 28 1 6.3075 -0.7667 0.2149 29 1 5.6709 -1.1104 -2.1569 30 1 6.1020 0.5786 -2.5173 31 1 7.7028 -1.3428 -5.2199 32 1 1.6645 2.4879 2.3998 33 1 4.6816 2.0689 3.1467 34 1 3.4636 3.0886 4.0842 35 1 2.0215 1.0328 4.4467 36 1 3.2387 0.0128 3.5091 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273336142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:38 Heat of formation + Delta-G solvation = 26.153207 kcal Electronic energy + Delta-G solvation = -16840.952811 eV Core-core repulsion = 14134.177120 eV Total energy + Delta-G solvation = -2706.775691 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28993 -36.77001 -35.76148 -34.40657 -32.87567 -32.13690 -29.33198 -26.10977 -24.87063 -22.69647 -22.18372 -20.84260 -20.23099 -19.56282 -17.48100 -16.54828 -16.29046 -15.43231 -14.95268 -14.87090 -14.49500 -14.07806 -13.68209 -13.31310 -12.98052 -12.81028 -12.28042 -12.22051 -11.67956 -11.25160 -11.16985 -11.00722 -10.87302 -10.63839 -10.32018 -10.25071 -9.67147 -9.58679 -9.42144 -9.18369 -8.55613 -8.40400 -8.09497 -6.08235 -4.10961 2.02304 2.96751 3.32245 3.35920 3.39553 3.43597 4.06358 4.24634 4.45005 4.78439 4.88265 4.98775 5.11242 5.20751 5.24287 5.28840 5.49484 5.58888 5.78521 5.85458 6.14753 6.29638 6.40275 6.43968 6.48813 6.58205 6.78056 6.85977 7.09085 7.16062 7.56127 7.63719 7.90614 8.25215 8.37264 8.93056 8.99285 9.53743 11.03403 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.005082 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.684913 B = 5508.607415 C = 6211.004045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.169 4.169 3 C 0.140 3.860 4 N -0.605 5.605 5 C 0.702 3.298 6 O -0.586 6.586 7 N -0.738 5.738 8 C 0.139 3.861 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.090 3.910 19 C -0.193 4.193 20 C -0.188 4.188 21 H 0.096 0.904 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.392 0.608 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.262 0.738 32 H 0.123 0.877 33 H 0.140 0.860 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.145 5.456 9.050 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.189 4.189 3 C 0.016 3.984 4 N -0.340 5.340 5 C 0.404 3.596 6 O -0.466 6.466 7 N -0.393 5.393 8 C 0.016 3.984 9 C -0.024 4.024 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.015 4.015 19 C -0.230 4.230 20 C -0.227 4.227 21 H 0.115 0.885 22 H 0.116 0.884 23 H 0.130 0.870 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.228 0.772 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.158 0.842 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.553 5.374 9.515 17.410 hybrid contribution 0.477 -0.409 -0.664 0.914 sum -13.076 4.965 8.851 16.553 Atomic orbital electron populations 1.23804 0.95637 1.01875 1.00530 1.23436 0.96422 0.99233 0.99787 1.20605 0.92493 0.95655 0.89601 1.46520 1.10781 1.65860 1.10852 1.16057 0.81068 0.78270 0.84192 1.90719 1.56501 1.61288 1.38082 1.45768 1.14155 1.70807 1.08528 1.21602 0.77556 0.98730 1.00494 1.19316 0.97621 0.97075 0.88395 1.21009 0.94866 1.45337 0.94765 0.92277 1.24987 0.97900 0.95417 0.95921 1.69945 1.35112 1.47970 1.00335 0.86571 0.84783 0.79158 0.77017 1.20109 1.21254 1.20109 1.21381 0.99628 1.01248 0.79247 1.23902 1.01008 0.97759 1.00325 1.23242 1.03100 0.97106 0.99279 0.88542 0.88361 0.87033 0.89794 0.89508 0.77242 0.92820 0.92690 0.96018 0.96034 0.92812 0.85902 0.84218 0.89799 0.89313 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 14.32 29.01 0.42 -1.18 16 2 C -0.17 -1.82 9.85 -36.03 -0.35 -2.17 16 3 C 0.14 1.52 5.75 -5.20 -0.03 1.49 16 4 N -0.61 -8.45 2.82 -173.17 -0.49 -8.94 16 5 C 0.70 12.60 8.06 -86.92 -0.70 11.90 16 6 O -0.59 -12.21 12.09 5.29 0.06 -12.15 16 7 N -0.74 -13.42 5.43 -65.23 -0.35 -13.77 16 8 C 0.14 3.01 5.62 -4.04 -0.02 2.99 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 10 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 14 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.09 1.12 6.62 -67.93 -0.45 0.67 16 19 C -0.19 -2.62 9.63 -26.69 -0.26 -2.88 16 20 C -0.19 -2.44 9.88 -26.69 -0.26 -2.71 16 21 H 0.10 0.70 7.84 -52.49 -0.41 0.29 16 22 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 23 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 24 H 0.08 0.71 7.68 -51.93 -0.40 0.31 16 25 H 0.09 0.94 6.21 -51.93 -0.32 0.62 16 26 H 0.39 6.33 6.15 -40.82 -0.25 6.08 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.12 1.16 8.09 -51.93 -0.42 0.74 16 33 H 0.14 2.42 5.22 -52.10 -0.27 2.15 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 1.51 7.59 -51.93 -0.39 1.12 16 LS Contribution 303.68 15.07 4.58 4.58 Total: -1.00 -31.03 303.68 -8.10 -39.13 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.39 Total: 5.12 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.22 Total: -4.94 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.11 Total: -48.14 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.06 Total: -12.15 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.03 -8.10 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273336142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.284 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds