Wall clock time and date at job start Sun Mar 29 2020 22:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00119 * 2 1 4 4 N 1.46495 * 109.47449 * 124.99688 * 3 2 1 5 5 C 1.34780 * 120.00447 * 89.99430 * 4 3 2 6 6 O 1.21582 * 120.00353 * 186.00907 * 5 4 3 7 7 N 1.34777 * 119.99377 * 6.01507 * 5 4 3 8 8 C 1.46504 * 119.99590 * 174.70416 * 7 5 4 9 9 C 1.52995 * 109.46798 * 180.27032 * 8 7 5 10 10 C 1.50705 * 109.46980 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99921 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99983 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00250 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99787 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47014 * 60.00522 * 14 12 10 16 16 H 1.48503 * 109.46756 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47337 * 300.00266 * 14 12 10 18 18 C 1.46504 * 119.99982 * 269.99995 * 4 3 2 19 19 C 1.52998 * 117.50235 * 196.48225 * 18 4 3 20 20 C 1.53003 * 117.49962 * 127.81882 * 18 4 3 21 21 H 1.08001 * 119.99845 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.00100 * 179.97438 * 1 2 3 23 23 H 1.08001 * 119.99845 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.46839 * 4.99204 * 3 2 1 25 25 H 1.08999 * 109.47064 * 244.99595 * 3 2 1 26 26 H 0.97001 * 120.00175 * 354.97512 * 7 5 4 27 27 H 1.08996 * 109.47293 * 300.27134 * 8 7 5 28 28 H 1.09003 * 109.47033 * 60.27653 * 8 7 5 29 29 H 1.09002 * 109.47958 * 300.00158 * 9 8 7 30 30 H 1.09003 * 109.47259 * 60.00800 * 9 8 7 31 31 H 0.97000 * 120.00015 * 180.02562 * 13 12 10 32 32 H 1.09002 * 115.54551 * 342.15123 * 18 4 3 33 33 H 1.09006 * 117.49249 * 359.97438 * 19 18 4 34 34 H 1.08997 * 117.50172 * 145.01838 * 19 18 4 35 35 H 1.09004 * 117.49771 * 214.97845 * 20 18 4 36 36 H 1.08995 * 117.49878 * 359.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2497 0.8661 0.9826 6 8 4.9868 0.7866 1.9462 7 7 4.6884 0.4886 -0.2346 8 6 6.0868 0.0924 -0.4186 9 6 6.3226 -0.2805 -1.8836 10 6 7.7612 -0.6874 -2.0731 11 1 8.4393 -0.6810 -1.2327 12 6 8.2116 -1.0677 -3.3195 13 7 7.3860 -1.0749 -4.3431 14 14 9.9950 -1.5713 -3.5545 15 1 10.2967 -2.7416 -2.6917 16 1 10.2241 -1.9322 -4.9767 17 1 10.8821 -0.4401 -3.1823 18 6 2.5588 1.8651 2.4248 19 6 3.6439 2.2275 3.4406 20 6 2.7739 0.9871 3.6593 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1316 0.0894 25 1 2.6214 1.4025 -0.9313 26 1 4.0793 0.4829 -0.9895 27 1 6.7385 0.9223 -0.1455 28 1 6.3075 -0.7667 0.2149 29 1 5.6709 -1.1104 -2.1569 30 1 6.1020 0.5786 -2.5173 31 1 7.7028 -1.3428 -5.2199 32 1 1.6645 2.4879 2.3998 33 1 4.6816 2.0689 3.1467 34 1 3.4636 3.0886 4.0842 35 1 2.0215 1.0328 4.4467 36 1 3.2387 0.0128 3.5091 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273336142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:38 Heat of formation + Delta-G solvation = 7.021715 kcal Electronic energy + Delta-G solvation = -16841.782415 eV Core-core repulsion = 14134.177120 eV Total energy + Delta-G solvation = -2707.605295 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58705 -38.05156 -36.91023 -35.99357 -34.65435 -33.32239 -31.18247 -27.16529 -26.66212 -24.09107 -23.22812 -22.62964 -21.17386 -20.81759 -18.73926 -18.38623 -17.65070 -16.77309 -16.49817 -16.26309 -15.81549 -15.46185 -15.15958 -14.45675 -14.35814 -14.28666 -13.88787 -13.25624 -13.07612 -12.95383 -12.58863 -12.52964 -12.39016 -12.11827 -11.80220 -11.62377 -11.45439 -11.25714 -10.73806 -10.59450 -10.36947 -10.03614 -9.30488 -8.24126 -6.34793 1.19210 1.41880 1.44354 1.52291 1.81479 2.05586 2.40804 2.94044 3.09998 3.10573 3.93578 3.99237 4.06649 4.16734 4.24740 4.37091 4.46746 4.50046 4.65819 4.75370 4.83950 4.86837 5.04804 5.09959 5.29550 5.41727 5.54678 5.57169 5.68164 5.73567 5.78521 5.89338 5.91926 6.16408 6.77732 6.97273 7.34521 7.57264 8.87684 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.005082 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.684913 B = 5508.607415 C = 6211.004045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.197 4.197 3 C 0.137 3.863 4 N -0.599 5.599 5 C 0.695 3.305 6 O -0.620 6.620 7 N -0.735 5.735 8 C 0.161 3.839 9 C 0.026 3.974 10 C -0.548 4.548 11 H 0.058 0.942 12 C 0.009 3.991 13 N -0.926 5.926 14 Si 0.965 3.035 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.268 1.268 18 C 0.094 3.906 19 C -0.204 4.204 20 C -0.188 4.188 21 H 0.122 0.878 22 H 0.104 0.896 23 H 0.085 0.915 24 H 0.121 0.879 25 H 0.082 0.918 26 H 0.403 0.597 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.266 0.734 32 H 0.169 0.831 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.736 6.393 9.383 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.217 4.217 3 C 0.016 3.984 4 N -0.332 5.332 5 C 0.397 3.603 6 O -0.502 6.502 7 N -0.391 5.391 8 C 0.037 3.963 9 C -0.012 4.012 10 C -0.586 4.586 11 H 0.077 0.923 12 C -0.190 4.190 13 N -0.566 5.566 14 Si 0.790 3.210 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.193 1.193 18 C -0.010 4.010 19 C -0.242 4.242 20 C -0.226 4.226 21 H 0.140 0.860 22 H 0.122 0.878 23 H 0.103 0.897 24 H 0.139 0.861 25 H 0.100 0.900 26 H 0.240 0.760 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.186 0.814 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.198 6.323 9.847 19.181 hybrid contribution 0.865 -0.702 -0.745 1.340 sum -14.333 5.620 9.102 17.885 Atomic orbital electron populations 1.24049 0.94778 1.03412 0.96901 1.23246 0.97164 0.98134 1.03147 1.20849 0.92386 0.97072 0.88129 1.46629 1.09634 1.64419 1.12561 1.16259 0.82390 0.78319 0.83296 1.90731 1.58040 1.62531 1.38944 1.45488 1.12934 1.71226 1.09497 1.21063 0.79581 0.97750 0.97942 1.19108 0.96311 0.95748 0.90033 1.21420 0.96204 1.45834 0.95166 0.92327 1.25861 1.02466 0.95164 0.95518 1.70051 1.37151 1.48540 1.00820 0.85495 0.79275 0.79018 0.77243 1.19422 1.20471 1.19294 1.21867 1.00223 1.00919 0.78010 1.23759 0.99172 0.99228 1.02017 1.23203 1.03487 0.95120 1.00827 0.85957 0.87767 0.89654 0.86137 0.90026 0.76044 0.93735 0.94080 0.97595 0.97321 0.92506 0.81407 0.88308 0.86933 0.86128 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 14.32 67.78 0.97 -1.25 16 2 C -0.20 -3.93 9.85 25.65 0.25 -3.68 16 3 C 0.14 2.69 5.75 85.63 0.49 3.18 16 4 N -0.60 -16.06 2.82 -820.05 -2.31 -18.37 16 5 C 0.70 25.48 8.06 179.05 1.44 26.92 16 6 O -0.62 -26.95 12.09 -3.97 -0.05 -27.00 16 7 N -0.74 -27.59 5.43 -478.54 -2.60 -30.18 16 8 C 0.16 7.26 5.62 86.38 0.49 7.75 16 9 C 0.03 1.32 5.09 29.85 0.15 1.47 16 10 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 11 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 12 C 0.01 0.50 5.46 84.65 0.46 0.96 16 13 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16 14 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 C 0.09 2.11 6.62 44.99 0.30 2.41 16 19 C -0.20 -5.35 9.63 30.62 0.29 -5.06 16 20 C -0.19 -4.62 9.88 30.62 0.30 -4.32 16 21 H 0.12 1.17 7.84 -2.91 -0.02 1.15 16 22 H 0.10 1.40 8.06 -2.91 -0.02 1.38 16 23 H 0.09 2.13 8.06 -2.91 -0.02 2.11 16 24 H 0.12 1.51 7.68 -2.39 -0.02 1.49 16 25 H 0.08 1.67 6.21 -2.39 -0.01 1.66 16 26 H 0.40 13.33 6.15 -92.71 -0.57 12.75 16 27 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.17 2.30 8.09 -2.39 -0.02 2.28 16 33 H 0.10 3.53 5.22 -5.18 -0.03 3.51 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 1.95 7.59 -2.39 -0.02 1.93 16 Total: -1.00 -69.01 303.68 3.21 -65.80 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.47 Total: 20.66 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.39 Total: -2.50 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -4.63 Total: -102.95 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.05 Total: -27.00 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.01 3.21 -65.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273336142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.820 kcal (2) G-P(sol) polarization free energy of solvation -69.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds