Wall clock time and date at job start Sun Mar 29 2020 22:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29448 * 118.17922 * 2 1 4 4 C 1.49967 * 124.61418 * 180.90013 * 3 2 1 5 5 C 1.53100 * 110.40380 * 340.98704 * 4 3 2 6 6 N 1.47335 * 107.88523 * 45.46122 * 5 4 3 7 7 C 1.34777 * 121.36389 * 118.23582 * 6 5 4 8 8 O 1.21587 * 119.99883 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99846 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99664 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46956 * 180.02562 * 10 9 7 12 12 C 1.50693 * 109.47313 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00061 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00482 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99463 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00442 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47234 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47413 * 119.99694 * 16 14 12 19 19 H 1.48505 * 109.46968 * 239.99823 * 16 14 12 20 20 C 1.47003 * 117.25958 * 298.23049 * 6 5 4 21 21 H 1.08997 * 109.47070 * 269.97852 * 1 2 3 22 22 H 1.09008 * 109.46996 * 29.97492 * 1 2 3 23 23 H 1.09002 * 109.47272 * 149.97461 * 1 2 3 24 24 H 1.08007 * 117.69027 * 0.88520 * 3 2 1 25 25 H 1.09008 * 109.31083 * 101.27374 * 4 3 2 26 26 H 1.08996 * 109.31930 * 220.88586 * 4 3 2 27 27 H 1.09002 * 109.77567 * 165.05582 * 5 4 3 28 28 H 1.09003 * 109.77977 * 285.86142 * 5 4 3 29 29 H 0.97002 * 120.00289 * 0.02562 * 9 7 6 30 30 H 1.08992 * 109.47614 * 300.00437 * 10 9 7 31 31 H 1.09004 * 109.46873 * 60.00873 * 10 9 7 32 32 H 1.09005 * 109.47081 * 300.00760 * 11 10 9 33 33 H 1.09001 * 109.46918 * 59.99888 * 11 10 9 34 34 H 0.97002 * 119.99660 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.52260 * 283.02333 * 20 6 5 36 36 H 1.08996 * 109.52384 * 162.83673 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1183 1.1411 0.0000 4 6 3.6084 1.3092 -0.0194 5 6 4.2971 0.0175 0.4290 6 7 3.6461 -1.1071 -0.2654 7 6 4.3330 -1.9030 -1.1087 8 8 5.5147 -1.6995 -1.3098 9 7 3.7099 -2.9244 -1.7291 10 6 4.4565 -3.7893 -2.6461 11 6 3.5218 -4.8607 -3.2113 12 6 4.2897 -5.7508 -4.1541 13 1 5.3396 -5.5706 -4.3321 14 6 3.6522 -6.7951 -4.7895 15 7 2.3738 -7.0149 -4.5723 16 14 4.6044 -7.8988 -5.9577 17 1 6.0162 -7.4439 -6.0282 18 1 4.5589 -9.2986 -5.4639 19 1 3.9947 -7.8310 -7.3101 20 6 2.2167 -1.3252 -0.0006 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8903 -0.5135 23 1 -0.3634 -0.8898 -0.5142 24 1 1.5124 2.0350 0.0148 25 1 3.9300 1.5569 -1.0310 26 1 3.8889 2.1173 0.6561 27 1 5.3540 0.0522 0.1646 28 1 4.1897 -0.1027 1.5071 29 1 2.7670 -3.0865 -1.5689 30 1 4.8588 -3.1909 -3.4634 31 1 5.2753 -4.2677 -2.1087 32 1 3.1190 -5.4592 -2.3941 33 1 2.7032 -4.3820 -3.7486 34 1 1.9252 -7.7494 -5.0196 35 1 2.0952 -1.8038 0.9711 36 1 1.7956 -1.9635 -0.7772 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281114625.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:44 Heat of formation + Delta-G solvation = -23.080774 kcal Electronic energy + Delta-G solvation = -16752.999094 eV Core-core repulsion = 14044.088457 eV Total energy + Delta-G solvation = -2708.910637 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14764 -37.74310 -34.90002 -33.64419 -32.94736 -31.89679 -29.36276 -27.14516 -25.85545 -24.50730 -22.83842 -20.95384 -20.01422 -18.14577 -17.53365 -16.44485 -15.86718 -15.33790 -14.77622 -14.46554 -14.41565 -14.19784 -13.89098 -13.46208 -13.27149 -12.69667 -12.48468 -12.29924 -12.12942 -11.99033 -11.54989 -11.12226 -11.03200 -10.79616 -10.59622 -10.30773 -9.88365 -9.53196 -9.22840 -8.94915 -8.70636 -8.44705 -8.16941 -6.07829 -4.10166 2.02300 2.90272 3.29823 3.37376 3.43000 3.57887 4.27007 4.45935 4.54180 4.69204 4.97450 5.14168 5.18766 5.29498 5.31151 5.41168 5.46418 5.50861 5.64109 5.79244 5.89767 5.91547 6.25471 6.38372 6.42601 6.57158 6.77438 6.79939 7.02546 7.24118 7.57963 7.65035 7.91630 8.26781 8.39710 8.94430 9.00819 9.54589 11.03988 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038316 B = 0.004672 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.598951 B = 5991.560595 C = 6564.369856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.143 4.143 3 C -0.148 4.148 4 C -0.106 4.106 5 C 0.129 3.871 6 N -0.637 5.637 7 C 0.706 3.294 8 O -0.596 6.596 9 N -0.738 5.738 10 C 0.139 3.861 11 C 0.013 3.987 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.149 3.851 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.392 0.608 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.261 0.739 35 H 0.076 0.924 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 14.718 11.170 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.144 4.144 3 C -0.166 4.166 4 C -0.144 4.144 5 C 0.006 3.994 6 N -0.376 5.376 7 C 0.408 3.592 8 O -0.475 6.475 9 N -0.393 5.393 10 C 0.016 3.984 11 C -0.025 4.025 12 C -0.558 4.558 13 H 0.079 0.921 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.210 1.210 20 C 0.026 3.974 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.122 0.878 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.227 0.773 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.412 14.696 10.928 18.629 hybrid contribution -0.260 -0.675 -0.572 0.922 sum -3.672 14.021 10.356 17.813 Atomic orbital electron populations 1.20873 0.91585 1.02861 1.02128 1.21157 0.96155 0.94936 1.02184 1.21782 0.96142 0.97114 1.01545 1.20797 0.92941 0.98145 1.02525 1.21461 0.98485 0.83932 0.95528 1.47324 1.09467 1.32752 1.48045 1.15885 0.84848 0.79825 0.78685 1.90870 1.14223 1.74349 1.68066 1.45680 1.13724 1.31499 1.48417 1.21605 0.95363 0.91070 0.90337 1.19331 0.94735 0.92268 0.96164 1.21093 0.96442 1.12698 1.25547 0.92147 1.24995 0.94932 0.97512 0.96867 1.69972 1.09387 1.30730 1.43313 0.86456 0.80229 0.80319 0.80563 1.19555 1.20948 1.20960 1.20351 0.80446 0.94903 1.01743 0.91495 0.91782 0.91446 0.87835 0.90399 0.90199 0.88581 0.91623 0.77304 0.92789 0.92725 0.95980 0.96008 0.92942 0.90599 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.88 36.00 0.36 -0.59 16 2 C -0.14 -1.47 5.92 -100.82 -0.60 -2.07 16 3 C -0.15 -1.47 9.37 -35.95 -0.34 -1.81 16 4 C -0.11 -1.08 6.28 -28.19 -0.18 -1.25 16 5 C 0.13 1.58 6.50 -3.53 -0.02 1.56 16 6 N -0.64 -9.29 2.97 -179.87 -0.53 -9.82 16 7 C 0.71 13.31 8.34 -86.92 -0.72 12.59 16 8 O -0.60 -13.37 15.83 5.29 0.08 -13.29 16 9 N -0.74 -13.91 5.46 -65.22 -0.36 -14.26 16 10 C 0.14 3.09 5.61 -4.04 -0.02 3.06 16 11 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 12 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 13 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 16 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.15 1.73 6.19 -5.10 -0.03 1.69 16 21 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.48 7.90 -51.92 -0.41 0.07 16 23 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 24 H 0.10 0.87 7.81 -52.48 -0.41 0.46 16 25 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 1.31 7.07 -51.93 -0.37 0.95 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.39 6.46 6.11 -40.82 -0.25 6.21 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.02 5.94 -51.93 -0.31 0.71 16 LS Contribution 298.40 15.07 4.50 4.50 Total: -1.00 -32.39 298.40 -8.22 -40.61 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.51 Total: 1.28 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.11 Total: 0.03 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.15 Total: -49.62 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.39 -8.22 -40.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281114625.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.528 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds