Wall clock time and date at job start Sun Mar 29 2020 22:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29448 * 118.17922 * 2 1 4 4 C 1.49967 * 124.61418 * 180.90013 * 3 2 1 5 5 C 1.53100 * 110.40380 * 340.98704 * 4 3 2 6 6 N 1.47335 * 107.88523 * 45.46122 * 5 4 3 7 7 C 1.34777 * 121.36389 * 118.23582 * 6 5 4 8 8 O 1.21587 * 119.99883 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99846 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99664 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46956 * 180.02562 * 10 9 7 12 12 C 1.50693 * 109.47313 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00061 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00482 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99463 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00442 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47234 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47413 * 119.99694 * 16 14 12 19 19 H 1.48505 * 109.46968 * 239.99823 * 16 14 12 20 20 C 1.47003 * 117.25958 * 298.23049 * 6 5 4 21 21 H 1.08997 * 109.47070 * 269.97852 * 1 2 3 22 22 H 1.09008 * 109.46996 * 29.97492 * 1 2 3 23 23 H 1.09002 * 109.47272 * 149.97461 * 1 2 3 24 24 H 1.08007 * 117.69027 * 0.88520 * 3 2 1 25 25 H 1.09008 * 109.31083 * 101.27374 * 4 3 2 26 26 H 1.08996 * 109.31930 * 220.88586 * 4 3 2 27 27 H 1.09002 * 109.77567 * 165.05582 * 5 4 3 28 28 H 1.09003 * 109.77977 * 285.86142 * 5 4 3 29 29 H 0.97002 * 120.00289 * 0.02562 * 9 7 6 30 30 H 1.08992 * 109.47614 * 300.00437 * 10 9 7 31 31 H 1.09004 * 109.46873 * 60.00873 * 10 9 7 32 32 H 1.09005 * 109.47081 * 300.00760 * 11 10 9 33 33 H 1.09001 * 109.46918 * 59.99888 * 11 10 9 34 34 H 0.97002 * 119.99660 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.52260 * 283.02333 * 20 6 5 36 36 H 1.08996 * 109.52384 * 162.83673 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1183 1.1411 0.0000 4 6 3.6084 1.3092 -0.0194 5 6 4.2971 0.0175 0.4290 6 7 3.6461 -1.1071 -0.2654 7 6 4.3330 -1.9030 -1.1087 8 8 5.5147 -1.6995 -1.3098 9 7 3.7099 -2.9244 -1.7291 10 6 4.4565 -3.7893 -2.6461 11 6 3.5218 -4.8607 -3.2113 12 6 4.2897 -5.7508 -4.1541 13 1 5.3396 -5.5706 -4.3321 14 6 3.6522 -6.7951 -4.7895 15 7 2.3738 -7.0149 -4.5723 16 14 4.6044 -7.8988 -5.9577 17 1 6.0162 -7.4439 -6.0282 18 1 4.5589 -9.2986 -5.4639 19 1 3.9947 -7.8310 -7.3101 20 6 2.2167 -1.3252 -0.0006 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8903 -0.5135 23 1 -0.3634 -0.8898 -0.5142 24 1 1.5124 2.0350 0.0148 25 1 3.9300 1.5569 -1.0310 26 1 3.8889 2.1173 0.6561 27 1 5.3540 0.0522 0.1646 28 1 4.1897 -0.1027 1.5071 29 1 2.7670 -3.0865 -1.5689 30 1 4.8588 -3.1909 -3.4634 31 1 5.2753 -4.2677 -2.1087 32 1 3.1190 -5.4592 -2.3941 33 1 2.7032 -4.3820 -3.7486 34 1 1.9252 -7.7494 -5.0196 35 1 2.0952 -1.8038 0.9711 36 1 1.7956 -1.9635 -0.7772 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281114625.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:44 Heat of formation + Delta-G solvation = -43.559893 kcal Electronic energy + Delta-G solvation = -16753.887135 eV Core-core repulsion = 14044.088457 eV Total energy + Delta-G solvation = -2709.798678 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.45279 -38.90113 -36.65804 -34.96848 -34.60583 -33.01942 -31.18813 -27.94633 -27.25917 -26.09727 -23.93744 -22.77749 -21.39973 -19.45779 -18.56099 -18.42336 -17.28725 -16.66435 -16.50843 -15.72474 -15.64587 -15.46668 -14.98134 -14.76274 -14.63524 -14.28513 -13.57960 -13.53813 -13.19282 -12.96730 -12.87941 -12.81341 -12.51889 -12.37304 -12.24779 -11.67790 -11.67258 -11.47197 -11.18525 -10.60953 -10.21035 -9.70857 -9.51760 -8.24048 -6.34319 1.25551 1.41754 1.42425 1.55300 1.62732 2.09009 2.41168 2.97667 3.10911 3.70293 3.87759 4.10821 4.22867 4.31391 4.44905 4.49082 4.51478 4.61770 4.72864 4.81522 4.84505 4.91340 5.00875 5.06145 5.20404 5.28772 5.44323 5.51782 5.56395 5.57697 5.78790 5.93574 6.05326 6.16860 6.78527 6.93954 7.35065 7.51126 8.88262 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038316 B = 0.004672 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.598951 B = 5991.560595 C = 6564.369856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.152 4.152 3 C -0.152 4.152 4 C -0.102 4.102 5 C 0.122 3.878 6 N -0.631 5.631 7 C 0.702 3.298 8 O -0.637 6.637 9 N -0.734 5.734 10 C 0.159 3.841 11 C 0.025 3.975 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.142 3.858 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.124 0.876 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.404 0.596 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.009 0.991 33 H 0.008 0.992 34 H 0.266 0.734 35 H 0.094 0.906 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 15.385 11.732 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.153 4.153 3 C -0.170 4.170 4 C -0.139 4.139 5 C 0.000 4.000 6 N -0.368 5.368 7 C 0.403 3.597 8 O -0.520 6.520 9 N -0.390 5.390 10 C 0.035 3.965 11 C -0.013 4.013 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.202 1.202 20 C 0.020 3.980 21 H 0.099 0.901 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.142 0.858 25 H 0.081 0.919 26 H 0.127 0.873 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.241 0.759 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.028 0.972 33 H 0.026 0.974 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.111 15.398 11.529 19.670 hybrid contribution -0.090 -0.833 -0.682 1.080 sum -4.202 14.565 10.847 18.640 Atomic orbital electron populations 1.20876 0.89895 1.03173 1.03151 1.21259 0.97305 0.94072 1.02621 1.21966 0.95995 0.97866 1.01137 1.20782 0.93146 0.97682 1.02328 1.21703 0.97581 0.84142 0.96588 1.47402 1.10708 1.32182 1.46555 1.16014 0.84509 0.80034 0.79126 1.90835 1.16130 1.75425 1.69582 1.45395 1.14123 1.31397 1.48119 1.21105 0.94519 0.90487 0.90367 1.19126 0.94485 0.92449 0.95225 1.21477 0.96751 1.13695 1.26508 0.92319 1.25861 0.95882 0.98876 0.98427 1.70067 1.10816 1.31456 1.44266 0.85381 0.78914 0.78311 0.78343 1.19016 1.20137 1.20182 1.20602 0.78567 0.96301 1.02571 0.90076 0.91023 0.91606 0.85799 0.91912 0.87276 0.90560 0.89274 0.75910 0.93935 0.93721 0.97243 0.97378 0.92515 0.88805 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.88 71.24 0.70 -0.84 16 2 C -0.15 -2.75 5.92 -15.02 -0.09 -2.84 16 3 C -0.15 -2.62 9.37 27.00 0.25 -2.37 16 4 C -0.10 -1.87 6.28 29.65 0.19 -1.68 16 5 C 0.12 2.84 6.50 86.25 0.56 3.40 16 6 N -0.63 -17.93 2.97 -841.25 -2.50 -20.42 16 7 C 0.70 26.66 8.34 179.06 1.49 28.15 16 8 O -0.64 -29.23 15.83 -3.99 -0.06 -29.29 16 9 N -0.73 -27.97 5.46 -478.53 -2.61 -30.58 16 10 C 0.16 7.25 5.61 86.38 0.48 7.73 16 11 C 0.02 1.27 5.09 29.85 0.15 1.43 16 12 C -0.55 -30.97 9.11 25.60 0.23 -30.73 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 14 C 0.01 0.47 5.46 84.65 0.46 0.93 16 15 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 16 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 20 C 0.14 3.06 6.19 85.42 0.53 3.59 16 21 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.07 0.87 7.90 -2.38 -0.02 0.86 16 23 H 0.06 0.91 8.08 -2.39 -0.02 0.89 16 24 H 0.12 1.67 7.81 -2.91 -0.02 1.64 16 25 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 2.09 7.07 -2.39 -0.02 2.07 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.40 13.34 6.11 -92.71 -0.57 12.77 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 1.88 5.94 -2.39 -0.01 1.87 16 Total: -1.00 -69.30 298.40 2.60 -66.70 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.49 Total: 15.08 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 4.97 Total: 6.77 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -4.83 Total: -105.21 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.06 Total: -29.29 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -69.30 2.60 -66.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281114625.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.142 kcal (2) G-P(sol) polarization free energy of solvation -69.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds