Wall clock time and date at job start Sun Mar 29 2020 22:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35449 * 126.77365 * 2 1 4 4 C 1.41385 * 103.98568 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.80041 * 179.74079 * 4 3 2 6 6 H 1.08997 * 109.47581 * 35.00173 * 5 4 3 7 7 C 1.53001 * 109.46963 * 274.99710 * 5 4 3 8 8 N 1.46902 * 109.47040 * 155.00061 * 5 4 3 9 9 C 1.46901 * 111.00294 * 204.99695 * 8 5 4 10 10 C 1.52995 * 109.47021 * 180.02562 * 9 8 5 11 11 C 1.53001 * 109.46933 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47355 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99734 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00429 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99708 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00433 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47136 * 89.99609 * 16 14 12 18 18 H 1.48490 * 109.47427 * 209.99861 * 16 14 12 19 19 H 1.48502 * 109.47032 * 330.00214 * 16 14 12 20 20 N 1.30179 * 106.39389 * 0.02562 * 4 3 2 21 21 O 1.20927 * 111.60367 * 359.97438 * 20 4 3 22 22 H 1.08992 * 109.47287 * 89.99876 * 1 2 3 23 23 H 1.09000 * 109.46745 * 209.99822 * 1 2 3 24 24 H 1.08996 * 109.46815 * 329.99376 * 1 2 3 25 25 H 1.08003 * 128.01213 * 0.02562 * 3 2 1 26 26 H 1.09003 * 109.46887 * 179.97438 * 7 5 4 27 27 H 1.09001 * 109.47346 * 300.00101 * 7 5 4 28 28 H 1.09002 * 109.47007 * 60.00486 * 7 5 4 29 29 H 1.00903 * 111.00274 * 328.95750 * 8 5 4 30 30 H 1.09000 * 109.47232 * 300.00171 * 9 8 5 31 31 H 1.09001 * 109.46931 * 60.00180 * 9 8 5 32 32 H 1.09000 * 109.47238 * 300.00144 * 10 9 8 33 33 H 1.09001 * 109.47140 * 60.00284 * 10 9 8 34 34 H 1.09000 * 109.47047 * 299.99980 * 11 10 9 35 35 H 1.09001 * 109.47204 * 60.00043 * 11 10 9 36 36 H 0.96996 * 119.99841 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9210 1.3002 -0.0046 6 1 4.8091 2.2127 0.5810 7 6 5.2952 1.6603 -1.4438 8 7 5.9795 0.4681 0.5830 9 6 7.0560 1.2996 1.1377 10 6 8.1375 0.3996 1.7385 11 6 9.2584 1.2658 2.3169 12 6 10.3240 0.3794 2.9082 13 1 10.2127 -0.6944 2.8752 14 6 11.4405 0.9391 3.4922 15 7 11.5757 2.2467 3.5328 16 14 12.7611 -0.1597 4.2258 17 1 13.7716 -0.4809 3.1860 18 1 13.4196 0.5443 5.3553 19 1 12.1419 -1.4161 4.7191 20 7 3.4764 -0.7564 0.0003 21 8 2.3095 -1.0736 0.0002 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 2.0345 2.1271 0.0004 26 1 6.2350 2.2125 -1.4475 27 1 5.4072 0.7478 -2.0293 28 1 4.5098 2.2777 -1.8797 29 1 5.6042 -0.1527 1.2843 30 1 7.4899 1.9088 0.3448 31 1 6.6504 1.9487 1.9138 32 1 7.7039 -0.2098 2.5314 33 1 8.5430 -0.2491 0.9621 34 1 9.6921 1.8755 1.5243 35 1 8.8526 1.9142 3.0934 36 1 12.3614 2.6404 3.9434 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282902627.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:00 Heat of formation + Delta-G solvation = 18.221224 kcal Electronic energy + Delta-G solvation = -16225.880192 eV Core-core repulsion = 13518.760544 eV Total energy + Delta-G solvation = -2707.119648 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.92334 -38.67604 -36.16708 -34.87013 -34.20588 -32.92642 -30.73042 -28.60378 -27.88296 -25.45735 -23.97265 -23.49414 -22.01738 -20.39767 -18.64446 -18.54827 -18.14354 -17.07438 -16.56904 -16.04692 -15.80200 -15.09562 -14.76912 -14.39276 -14.38054 -13.92810 -13.76745 -13.52609 -13.42290 -13.14880 -12.90474 -12.77191 -12.52959 -12.29752 -12.25790 -12.07319 -11.57488 -11.41287 -11.19269 -10.99783 -10.57021 -10.23630 -9.49742 -8.22075 -6.33099 0.56900 1.24544 1.38547 1.40232 1.51533 2.28626 2.39610 2.93771 3.10821 3.11718 3.72140 4.06757 4.12821 4.15955 4.21457 4.38962 4.41491 4.55194 4.65669 4.73763 4.76361 4.84810 4.90259 4.94725 5.02150 5.10121 5.17825 5.25803 5.28930 5.49188 5.71537 5.83153 5.96998 6.24426 6.27680 6.83048 7.35984 7.38069 8.89915 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052530 B = 0.003580 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.896863 B = 7819.375827 C = 8070.446307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.030 4.030 3 C -0.237 4.237 4 C 0.002 3.998 5 C 0.159 3.841 6 H 0.075 0.925 7 C -0.129 4.129 8 N -0.687 5.687 9 C 0.073 3.927 10 C -0.093 4.093 11 C 0.028 3.972 12 C -0.546 4.546 13 H 0.056 0.944 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.966 3.034 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.265 1.265 20 N -0.384 5.384 21 O 0.085 5.915 22 H 0.104 0.896 23 H 0.092 0.908 24 H 0.111 0.889 25 H 0.198 0.802 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.340 0.660 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.050 0.950 34 H -0.005 1.005 35 H -0.007 1.007 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.210 -0.647 -8.279 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 C -0.258 4.258 4 C -0.157 4.157 5 C 0.049 3.951 6 H 0.093 0.907 7 C -0.187 4.187 8 N -0.319 5.319 9 C -0.056 4.056 10 C -0.131 4.131 11 C -0.010 4.010 12 C -0.584 4.584 13 H 0.075 0.925 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.189 1.189 20 N -0.089 5.089 21 O 0.019 5.981 22 H 0.123 0.877 23 H 0.110 0.890 24 H 0.130 0.870 25 H 0.215 0.785 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.158 0.842 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.930 -1.649 -8.823 24.624 hybrid contribution 0.391 0.749 1.253 1.512 sum -22.539 -0.900 -7.570 23.793 Atomic orbital electron populations 1.20574 0.80684 1.06068 1.05531 1.25357 0.98103 0.85199 1.00691 1.22713 0.89802 1.02548 1.10773 1.23836 0.97972 0.90288 1.03562 1.20003 0.83777 0.93188 0.98174 0.90740 1.21733 1.02231 1.01377 0.93391 1.60529 1.11450 1.21036 1.38915 1.21931 0.91636 0.94726 0.97287 1.21374 0.95215 0.97916 0.98595 1.18946 0.92966 0.94680 0.94399 1.21693 1.05390 0.93620 1.37702 0.92546 1.25984 1.00795 0.96534 0.96485 1.70091 1.29778 1.11541 1.45857 0.85434 0.78665 0.78753 0.78124 1.19682 1.20422 1.18941 1.73910 0.97456 1.17182 1.20380 1.84814 1.11280 1.34416 1.67565 0.87738 0.88952 0.87039 0.78524 0.91760 0.93402 0.90011 0.84219 0.91029 0.95353 0.93692 0.93120 0.98681 0.98855 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.45 71.24 0.74 0.31 16 2 C -0.03 -0.50 7.49 25.04 0.19 -0.31 16 3 C -0.24 -4.29 11.06 22.40 0.25 -4.04 16 4 C 0.00 0.05 6.03 43.58 0.26 0.32 16 5 C 0.16 4.22 3.12 44.17 0.14 4.36 16 6 H 0.07 1.81 7.80 -2.39 -0.02 1.79 16 7 C -0.13 -3.09 9.40 71.98 0.68 -2.41 16 8 N -0.69 -22.58 6.22 -495.46 -3.08 -25.66 16 9 C 0.07 2.66 5.48 86.30 0.47 3.13 16 10 C -0.09 -4.13 5.41 30.59 0.17 -3.97 16 11 C 0.03 1.52 4.97 29.85 0.15 1.67 16 12 C -0.55 -32.45 9.11 25.60 0.23 -32.22 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 14 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 15 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 16 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 N -0.38 -11.29 11.61 -49.54 -0.58 -11.86 16 21 O 0.09 2.08 11.20 71.65 0.80 2.88 16 22 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 23 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.11 0.25 8.14 -2.39 -0.02 0.24 16 25 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 26 H 0.06 1.57 7.45 -2.39 -0.02 1.56 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 29 H 0.34 11.52 8.09 -89.69 -0.73 10.80 16 30 H 0.07 2.58 7.44 -2.39 -0.02 2.57 16 31 H 0.03 1.01 8.06 -2.39 -0.02 0.99 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -70.96 307.38 3.53 -67.43 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.33 Total: 9.95 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 3.74 Total: -32.71 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -3.37 Total: -95.12 kcal Atomic # 8 Polarization: 2.08 SS G_CDS: 0.80 Total: 2.88 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.96 3.53 -67.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282902627.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.655 kcal (2) G-P(sol) polarization free energy of solvation -70.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds