Wall clock time and date at job start Sun Mar 29 2020 22:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99987 * 2 1 4 4 N 1.46900 * 109.47080 * 125.00609 * 3 2 1 5 5 C 1.46906 * 110.99420 * 287.82093 * 4 3 2 6 6 C 1.50699 * 109.46644 * 158.91372 * 5 4 3 7 7 H 1.08002 * 120.00480 * 4.54703 * 6 5 4 8 8 C 1.37882 * 119.99956 * 184.54942 * 6 5 4 9 9 N 1.31513 * 119.99884 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47365 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47073 * 120.00334 * 10 8 6 13 13 H 1.48501 * 109.47417 * 240.00340 * 10 8 6 14 14 C 1.46900 * 111.00049 * 163.87306 * 4 3 2 15 15 C 1.50705 * 109.46778 * 293.95086 * 14 4 3 16 16 O 1.21276 * 120.00025 * 359.97438 * 15 14 4 17 17 N 1.34775 * 119.99939 * 180.02562 * 15 14 4 18 18 C 1.47578 * 134.49202 * 179.97438 * 17 15 14 19 19 C 1.53951 * 86.11734 * 204.64193 * 18 17 15 20 20 C 1.47582 * 134.49135 * 0.02562 * 17 15 14 21 21 H 1.07997 * 119.99940 * 179.97438 * 1 2 3 22 22 H 1.08004 * 120.00059 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.00041 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47327 * 5.00006 * 3 2 1 25 25 H 1.08997 * 109.47253 * 245.00238 * 3 2 1 26 26 H 1.09001 * 109.47251 * 278.91149 * 5 4 3 27 27 H 1.08992 * 109.47319 * 38.91263 * 5 4 3 28 28 H 0.97001 * 120.00380 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.47019 * 173.95068 * 14 4 3 30 30 H 1.08999 * 109.47354 * 53.95068 * 14 4 3 31 31 H 1.09001 * 113.76648 * 90.33995 * 18 17 15 32 32 H 1.08993 * 113.77225 * 318.94329 * 18 17 15 33 33 H 1.08993 * 113.74084 * 90.74215 * 19 18 17 34 34 H 1.08998 * 113.74210 * 222.05102 * 19 18 17 35 35 H 1.08998 * 113.77673 * 41.05245 * 20 17 15 36 36 H 1.09004 * 113.76724 * 269.65729 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3319 1.1344 5 6 2.2761 1.4934 2.4045 6 6 3.1432 1.0106 3.5386 7 1 4.1567 0.6915 3.3454 8 6 2.6426 0.9763 4.8229 9 7 1.4082 1.3644 5.0580 10 14 3.7171 0.3773 6.2285 11 1 5.0541 0.0000 5.7035 12 1 3.8678 1.4607 7.2328 13 1 3.0840 -0.8047 6.8666 14 6 4.0039 2.3872 0.9628 15 6 4.8824 2.0559 -0.2161 16 8 4.6886 1.0405 -0.8504 17 7 5.8840 2.8875 -0.5648 18 6 6.9098 2.8832 -1.6257 19 6 7.7374 3.7769 -0.6842 20 6 6.3960 4.1677 -0.0385 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1317 0.0896 25 1 2.6213 1.4027 -0.9314 26 1 2.0348 2.5458 2.5542 27 1 1.3558 0.9101 2.3770 28 1 1.0559 1.3400 5.9615 29 1 4.6145 2.4564 1.8630 30 1 3.5053 3.3405 0.7878 31 1 6.5959 3.3826 -2.5423 32 1 7.3533 1.9037 -1.8041 33 1 8.3982 3.2206 -0.0195 34 1 8.2381 4.6023 -1.1902 35 1 6.4294 4.2134 1.0500 36 1 5.9310 5.0450 -0.4883 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292058817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:34 Heat of formation + Delta-G solvation = 33.332035 kcal Electronic energy + Delta-G solvation = -17080.890228 eV Core-core repulsion = 14374.425834 eV Total energy + Delta-G solvation = -2706.464394 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98451 -37.87801 -36.13276 -33.08079 -32.20137 -30.02852 -27.60166 -26.78366 -25.95814 -23.80532 -21.99913 -20.58023 -19.09053 -18.70456 -16.81496 -16.37529 -16.22636 -15.54778 -15.08433 -14.43300 -13.95581 -13.88587 -13.43553 -13.02029 -12.73627 -12.52307 -12.37033 -12.11442 -11.60507 -11.42371 -11.19826 -11.06092 -10.98284 -10.67560 -10.60928 -10.38717 -9.96419 -9.33416 -9.17361 -8.63150 -8.52897 -8.39426 -7.25500 -6.00540 -4.01866 2.89828 2.95464 3.08541 3.31634 3.39395 3.44768 4.30690 4.44406 4.67799 4.92084 5.06488 5.12733 5.32206 5.35128 5.40471 5.55279 5.60921 5.63968 5.80920 5.87989 6.01411 6.05677 6.13539 6.18452 6.33609 6.57038 7.18140 7.27187 7.27748 7.42750 7.84691 7.85440 8.10879 8.19290 8.52853 8.61662 9.05980 9.62107 11.09909 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.017829 B = 0.007680 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.061414 B = 3644.873270 C = 4860.045394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.110 4.110 3 C 0.077 3.923 4 N -0.516 5.516 5 C 0.192 3.808 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.054 3.946 15 C 0.536 3.464 16 O -0.522 6.522 17 N -0.655 5.655 18 C 0.105 3.895 19 C -0.153 4.153 20 C 0.100 3.900 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.109 0.891 24 H 0.022 0.978 25 H 0.079 0.921 26 H -0.010 1.010 27 H 0.042 0.958 28 H 0.260 0.740 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.633 6.980 -10.930 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.129 4.129 3 C -0.050 4.050 4 N -0.241 5.241 5 C 0.068 3.932 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.210 1.210 14 C -0.078 4.078 15 C 0.326 3.674 16 O -0.397 6.397 17 N -0.394 5.394 18 C -0.018 4.018 19 C -0.191 4.191 20 C -0.023 4.023 21 H 0.110 0.890 22 H 0.107 0.893 23 H 0.127 0.873 24 H 0.040 0.960 25 H 0.098 0.902 26 H 0.007 0.993 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.447 5.836 -11.035 15.072 hybrid contribution -0.018 0.521 0.921 1.058 sum 8.430 6.356 -10.114 14.620 Atomic orbital electron populations 1.23645 0.95928 1.01000 1.04542 1.22803 0.95095 0.98851 0.96118 1.21288 0.94059 0.94090 0.95607 1.61804 1.14699 1.44227 1.03369 1.19837 0.94373 0.95287 0.83742 1.21209 0.99478 1.42534 0.91101 0.91918 1.24980 0.95111 0.95632 0.98852 1.69968 1.14692 1.48217 1.20936 0.86467 0.80694 0.78397 0.82026 1.19674 1.21150 1.20986 1.21797 0.95344 0.94121 0.96516 1.20875 0.78625 0.82384 0.85522 1.90645 1.68936 1.25578 1.54558 1.50191 1.32816 1.23366 1.33060 1.23032 0.86276 1.00333 0.92119 1.23503 0.96531 0.99989 0.99079 1.23155 0.91473 0.86923 1.00784 0.88990 0.89321 0.87256 0.95974 0.90243 0.99257 0.93950 0.92999 0.87267 0.93478 0.90328 0.90373 0.88991 0.89986 0.89717 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.83 14.32 29.01 0.42 -3.42 16 2 C -0.11 -2.21 8.76 -36.03 -0.32 -2.53 16 3 C 0.08 1.60 4.96 -4.98 -0.02 1.58 16 4 N -0.52 -11.95 4.10 -238.96 -0.98 -12.92 16 5 C 0.19 5.10 4.59 -4.97 -0.02 5.08 16 6 C -0.50 -14.37 8.65 -34.44 -0.30 -14.67 16 7 H 0.06 1.79 7.74 -52.49 -0.41 1.39 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 10 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.05 1.06 5.01 -4.97 -0.02 1.03 16 15 C 0.54 10.01 7.62 -10.98 -0.08 9.92 16 16 O -0.52 -11.52 15.21 5.56 0.08 -11.44 16 17 N -0.65 -9.28 3.61 -178.75 -0.64 -9.92 16 18 C 0.11 1.12 8.83 -2.97 -0.03 1.09 16 19 C -0.15 -1.22 8.29 -25.82 -0.21 -1.43 16 20 C 0.10 0.98 8.61 -2.99 -0.03 0.95 16 21 H 0.09 1.48 8.06 -52.49 -0.42 1.05 16 22 H 0.09 1.52 7.84 -52.48 -0.41 1.11 16 23 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 24 H 0.02 0.45 7.70 -51.93 -0.40 0.05 16 25 H 0.08 1.63 5.81 -51.93 -0.30 1.33 16 26 H -0.01 -0.28 7.98 -51.93 -0.41 -0.70 16 27 H 0.04 1.22 7.12 -51.93 -0.37 0.85 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.11 2.21 7.44 -51.93 -0.39 1.82 16 30 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 305.19 15.07 4.60 4.60 Total: -1.00 -33.46 305.19 -7.57 -41.03 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.63 Total: -1.15 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.72 Total: -0.90 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.89 Total: -48.94 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.46 -7.57 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292058817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.363 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds