Wall clock time and date at job start Sun Mar 29 2020 22:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99987 * 2 1 4 4 N 1.46900 * 109.47080 * 125.00609 * 3 2 1 5 5 C 1.46906 * 110.99420 * 287.82093 * 4 3 2 6 6 C 1.50699 * 109.46644 * 158.91372 * 5 4 3 7 7 H 1.08002 * 120.00480 * 4.54703 * 6 5 4 8 8 C 1.37882 * 119.99956 * 184.54942 * 6 5 4 9 9 N 1.31513 * 119.99884 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47365 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47073 * 120.00334 * 10 8 6 13 13 H 1.48501 * 109.47417 * 240.00340 * 10 8 6 14 14 C 1.46900 * 111.00049 * 163.87306 * 4 3 2 15 15 C 1.50705 * 109.46778 * 293.95086 * 14 4 3 16 16 O 1.21276 * 120.00025 * 359.97438 * 15 14 4 17 17 N 1.34775 * 119.99939 * 180.02562 * 15 14 4 18 18 C 1.47578 * 134.49202 * 179.97438 * 17 15 14 19 19 C 1.53951 * 86.11734 * 204.64193 * 18 17 15 20 20 C 1.47582 * 134.49135 * 0.02562 * 17 15 14 21 21 H 1.07997 * 119.99940 * 179.97438 * 1 2 3 22 22 H 1.08004 * 120.00059 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.00041 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47327 * 5.00006 * 3 2 1 25 25 H 1.08997 * 109.47253 * 245.00238 * 3 2 1 26 26 H 1.09001 * 109.47251 * 278.91149 * 5 4 3 27 27 H 1.08992 * 109.47319 * 38.91263 * 5 4 3 28 28 H 0.97001 * 120.00380 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.47019 * 173.95068 * 14 4 3 30 30 H 1.08999 * 109.47354 * 53.95068 * 14 4 3 31 31 H 1.09001 * 113.76648 * 90.33995 * 18 17 15 32 32 H 1.08993 * 113.77225 * 318.94329 * 18 17 15 33 33 H 1.08993 * 113.74084 * 90.74215 * 19 18 17 34 34 H 1.08998 * 113.74210 * 222.05102 * 19 18 17 35 35 H 1.08998 * 113.77673 * 41.05245 * 20 17 15 36 36 H 1.09004 * 113.76724 * 269.65729 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3319 1.1344 5 6 2.2761 1.4934 2.4045 6 6 3.1432 1.0106 3.5386 7 1 4.1567 0.6915 3.3454 8 6 2.6426 0.9763 4.8229 9 7 1.4082 1.3644 5.0580 10 14 3.7171 0.3773 6.2285 11 1 5.0541 0.0000 5.7035 12 1 3.8678 1.4607 7.2328 13 1 3.0840 -0.8047 6.8666 14 6 4.0039 2.3872 0.9628 15 6 4.8824 2.0559 -0.2161 16 8 4.6886 1.0405 -0.8504 17 7 5.8840 2.8875 -0.5648 18 6 6.9098 2.8832 -1.6257 19 6 7.7374 3.7769 -0.6842 20 6 6.3960 4.1677 -0.0385 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1317 0.0896 25 1 2.6213 1.4027 -0.9314 26 1 2.0348 2.5458 2.5542 27 1 1.3558 0.9101 2.3770 28 1 1.0559 1.3400 5.9615 29 1 4.6145 2.4564 1.8630 30 1 3.5053 3.3405 0.7878 31 1 6.5959 3.3826 -2.5423 32 1 7.3533 1.9037 -1.8041 33 1 8.3982 3.2206 -0.0195 34 1 8.2381 4.6023 -1.1902 35 1 6.4294 4.2134 1.0500 36 1 5.9310 5.0450 -0.4883 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292058817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:32 Heat of formation + Delta-G solvation = 10.259275 kcal Electronic energy + Delta-G solvation = -17081.890738 eV Core-core repulsion = 14374.425834 eV Total energy + Delta-G solvation = -2707.464904 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17607 -39.23150 -37.74981 -34.99708 -34.04221 -31.30524 -29.51382 -28.19333 -26.92706 -25.70905 -23.30374 -22.13500 -20.66704 -19.83219 -18.55965 -18.11460 -17.27094 -16.97533 -16.71615 -16.23738 -15.65754 -15.27179 -14.94590 -14.62605 -14.12413 -13.98748 -13.51097 -13.35705 -13.28926 -12.99576 -12.77387 -12.55390 -12.53101 -12.23970 -12.11430 -11.89011 -11.82658 -11.35907 -10.71455 -10.60593 -10.15321 -9.65706 -9.07027 -8.19290 -6.29510 1.39105 1.40455 1.42208 1.54952 1.63394 1.84114 2.40874 3.11643 3.30199 3.52856 3.64477 4.07296 4.17770 4.21469 4.26416 4.36428 4.47581 4.54928 4.59462 4.65315 4.69632 4.72660 4.99750 5.01299 5.02682 5.13296 5.23438 5.35610 5.63114 5.72212 5.84862 6.07967 6.27239 6.54845 6.69829 6.84683 7.22069 7.39692 8.91228 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.017829 B = 0.007680 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.061414 B = 3644.873270 C = 4860.045394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.143 4.143 3 C 0.084 3.916 4 N -0.533 5.533 5 C 0.211 3.789 6 C -0.522 4.522 7 H 0.055 0.945 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.967 3.033 11 H -0.267 1.267 12 H -0.273 1.273 13 H -0.280 1.280 14 C 0.055 3.945 15 C 0.533 3.467 16 O -0.569 6.569 17 N -0.660 5.660 18 C 0.097 3.903 19 C -0.130 4.130 20 C 0.093 3.907 21 H 0.114 0.886 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.026 0.974 25 H 0.080 0.920 26 H -0.029 1.029 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.024 8.071 -11.047 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.161 4.161 3 C -0.043 4.043 4 N -0.258 5.258 5 C 0.086 3.914 6 C -0.560 4.560 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.791 3.209 11 H -0.192 1.192 12 H -0.198 1.198 13 H -0.206 1.206 14 C -0.076 4.076 15 C 0.323 3.677 16 O -0.448 6.448 17 N -0.398 5.398 18 C -0.025 4.025 19 C -0.168 4.168 20 C -0.028 4.028 21 H 0.132 0.868 22 H 0.116 0.884 23 H 0.117 0.883 24 H 0.044 0.956 25 H 0.098 0.902 26 H -0.012 1.012 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.887 6.983 -11.171 16.471 hybrid contribution -0.443 0.254 0.891 1.027 sum 9.444 7.237 -10.279 15.723 Atomic orbital electron populations 1.23897 0.95206 1.02490 1.01260 1.22787 0.95997 0.98183 0.99175 1.21240 0.93755 0.94656 0.94639 1.61687 1.15358 1.45980 1.02734 1.19439 0.93401 0.93296 0.85307 1.21435 0.99429 1.42925 0.92219 0.92631 1.25843 0.96430 0.95479 1.01468 1.70079 1.16322 1.48937 1.21842 0.85376 0.78840 0.78074 0.78570 1.19155 1.19830 1.20574 1.21756 0.94866 0.93876 0.97104 1.20530 0.79506 0.82664 0.85001 1.90612 1.70630 1.27638 1.55911 1.50376 1.31253 1.24079 1.34055 1.23392 0.85482 1.00832 0.92777 1.23413 0.95379 1.00148 0.97846 1.23558 0.92289 0.85705 1.01290 0.86790 0.88411 0.88317 0.95616 0.90161 1.01154 0.96675 0.92606 0.88289 0.91952 0.88168 0.91479 0.89161 0.86172 0.89752 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.76 14.32 67.78 0.97 -5.78 16 2 C -0.14 -5.86 8.76 25.65 0.22 -5.63 16 3 C 0.08 3.59 4.96 85.56 0.42 4.02 16 4 N -0.53 -25.43 4.10 -909.93 -3.73 -29.16 16 5 C 0.21 11.59 4.59 85.56 0.39 11.98 16 6 C -0.52 -30.31 8.65 25.60 0.22 -30.09 16 7 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 8 C 0.01 0.35 5.46 84.66 0.46 0.81 16 9 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 10 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 C 0.06 2.22 5.01 85.56 0.43 2.64 16 15 C 0.53 20.11 7.62 87.66 0.67 20.78 16 16 O -0.57 -25.74 15.21 -3.02 -0.05 -25.79 16 17 N -0.66 -17.93 3.61 -837.84 -3.02 -20.96 16 18 C 0.10 1.85 8.83 86.48 0.76 2.62 16 19 C -0.13 -1.62 8.29 31.24 0.26 -1.36 16 20 C 0.09 1.57 8.61 86.47 0.74 2.32 16 21 H 0.11 3.49 8.06 -2.91 -0.02 3.47 16 22 H 0.10 3.27 7.84 -2.91 -0.02 3.24 16 23 H 0.10 4.20 8.06 -2.91 -0.02 4.18 16 24 H 0.03 1.06 7.70 -2.39 -0.02 1.04 16 25 H 0.08 3.39 5.81 -2.39 -0.01 3.38 16 26 H -0.03 -1.67 7.98 -2.39 -0.02 -1.69 16 27 H 0.02 0.90 7.12 -2.39 -0.02 0.88 16 28 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.10 4.11 7.44 -2.39 -0.02 4.09 16 30 H 0.06 2.27 8.12 -2.39 -0.02 2.25 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -73.71 305.19 2.11 -71.60 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.04 Total: 11.06 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.56 Total: 2.31 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -6.47 Total: -105.96 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -73.71 2.11 -71.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292058817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.863 kcal (2) G-P(sol) polarization free energy of solvation -73.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds