Wall clock time and date at job start Sun Mar 29 2020 22:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50691 * 109.47450 * 2 1 4 4 N 1.30170 * 126.80512 * 268.05129 * 3 2 1 5 5 O 1.20923 * 111.61013 * 179.97438 * 4 3 2 6 6 C 1.34044 * 111.56188 * 359.76238 * 5 4 3 7 7 C 1.35453 * 106.44815 * 0.37838 * 6 5 4 8 8 C 1.50701 * 128.00976 * 179.91158 * 7 6 5 9 9 N 1.46897 * 109.46728 * 101.89418 * 8 7 6 10 10 C 1.46902 * 111.00525 * 288.38854 * 9 8 7 11 11 C 1.46907 * 110.99731 * 164.43568 * 9 8 7 12 12 H 1.08996 * 109.46925 * 310.00332 * 11 9 8 13 13 C 1.53005 * 109.46777 * 70.00061 * 11 9 8 14 14 C 1.50701 * 109.47201 * 190.00033 * 11 9 8 15 15 H 1.07995 * 119.99872 * 0.02562 * 14 11 9 16 16 C 1.37875 * 119.99932 * 179.97438 * 14 11 9 17 17 N 1.31510 * 119.99966 * 180.02562 * 16 14 11 18 18 Si 1.86803 * 119.99969 * 359.97438 * 16 14 11 19 19 H 1.48502 * 109.46557 * 90.00231 * 18 16 14 20 20 H 1.48494 * 109.47230 * 210.00017 * 18 16 14 21 21 H 1.48497 * 109.47261 * 330.00470 * 18 16 14 22 22 H 1.09004 * 109.46829 * 60.00099 * 1 2 3 23 23 H 1.09001 * 109.46816 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47059 * 300.00050 * 1 2 3 25 25 H 1.09004 * 109.47113 * 239.99979 * 2 1 3 26 26 H 1.08998 * 109.46790 * 120.00805 * 2 1 3 27 27 H 1.08000 * 126.77812 * 180.28772 * 6 5 4 28 28 H 1.09007 * 109.46781 * 341.89902 * 8 7 6 29 29 H 1.08992 * 109.47215 * 221.90122 * 8 7 6 30 30 H 1.09005 * 109.47019 * 302.42554 * 10 9 8 31 31 H 1.08997 * 109.47059 * 62.41630 * 10 9 8 32 32 H 1.08997 * 109.47243 * 182.42554 * 10 9 8 33 33 H 1.09003 * 109.46531 * 180.02562 * 13 11 9 34 34 H 1.08996 * 109.47171 * 60.00422 * 13 11 9 35 35 H 1.08996 * 109.47030 * 299.99355 * 13 11 9 36 36 H 0.97006 * 120.00247 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.3259 2.1441 -1.0416 5 8 2.7043 3.2481 -0.7249 6 6 2.7059 3.4052 0.6063 7 6 2.2779 2.2322 1.1314 8 6 2.0986 1.8767 2.5849 9 7 0.6732 1.9449 2.9334 10 6 0.2076 3.3375 2.9757 11 6 0.4096 1.2628 4.2075 12 1 0.8586 0.2698 4.1877 13 6 1.0153 2.0737 5.3549 14 6 -1.0782 1.1374 4.4117 15 1 -1.7598 1.5251 3.6691 16 6 -1.5693 0.5266 5.5461 17 7 -2.8676 0.4167 5.7241 18 14 -0.3904 -0.1461 6.8295 19 1 -0.0912 0.9108 7.8289 20 1 -1.0118 -1.3099 7.5109 21 1 0.8691 -0.5736 6.1690 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5140 0.8899 27 1 2.9932 4.2915 1.1525 28 1 2.6578 2.5797 3.2025 29 1 2.4676 0.8661 2.7599 30 1 0.8059 3.8991 3.6933 31 1 0.3110 3.7853 1.9873 32 1 -0.8394 3.3616 3.2779 33 1 0.8201 1.5673 6.3002 34 1 0.5663 3.0666 5.3748 35 1 2.0915 2.1643 5.2073 36 1 -3.2132 -0.0127 6.5223 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293360104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:31 Heat of formation + Delta-G solvation = 67.565839 kcal Electronic energy + Delta-G solvation = -17662.092341 eV Core-core repulsion = 14957.112436 eV Total energy + Delta-G solvation = -2704.979905 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.67712 -37.75172 -35.20639 -33.02452 -31.87541 -30.75695 -29.60757 -27.20735 -25.31630 -24.34566 -23.76679 -21.14969 -20.60030 -19.31433 -17.36146 -17.13840 -16.61918 -15.40682 -14.93296 -14.44067 -14.25548 -13.75353 -13.43007 -13.13211 -12.98023 -12.36165 -12.25528 -12.20596 -11.68212 -11.52429 -11.23248 -11.13989 -11.06194 -10.84684 -10.49077 -10.35326 -10.07453 -9.67698 -9.52932 -9.23229 -9.07879 -8.62134 -7.44036 -6.10014 -4.08356 1.71009 2.48094 3.21801 3.31557 3.35051 3.47252 4.35504 4.39475 4.75289 4.89219 5.12178 5.21309 5.38854 5.53844 5.65088 5.75003 5.78839 5.94048 5.96951 6.04252 6.14271 6.19803 6.23174 6.24546 6.31789 6.46030 6.48977 6.63992 6.81492 6.84894 7.11374 7.57320 7.85734 7.98621 8.51004 8.60877 8.98238 9.51784 11.03015 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033380 B = 0.007157 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.619437 B = 3911.210797 C = 4220.607381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.038 4.038 3 C 0.042 3.958 4 N -0.376 5.376 5 O 0.089 5.911 6 C -0.072 4.072 7 C -0.171 4.171 8 C 0.123 3.877 9 N -0.515 5.515 10 C 0.033 3.967 11 C 0.182 3.818 12 H 0.040 0.960 13 C -0.187 4.187 14 C -0.501 4.501 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.885 3.115 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.268 1.268 22 H 0.045 0.955 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.210 0.790 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.017 0.983 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.027 0.973 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.100 3.520 -6.846 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 C -0.117 4.117 4 N -0.083 5.083 5 O 0.025 5.975 6 C -0.154 4.154 7 C -0.175 4.175 8 C -0.006 4.006 9 N -0.238 5.238 10 C -0.116 4.116 11 C 0.075 3.925 12 H 0.057 0.943 13 C -0.246 4.246 14 C -0.539 4.539 15 H 0.100 0.900 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.716 3.284 19 H -0.209 1.209 20 H -0.224 1.224 21 H -0.194 1.194 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.226 0.774 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.660 2.995 -8.418 13.909 hybrid contribution 0.990 0.161 2.433 2.632 sum 11.650 3.156 -5.985 13.472 Atomic orbital electron populations 1.21753 0.93111 1.02213 1.03609 1.19869 0.97333 0.87781 1.02668 1.23506 1.00614 0.99458 0.88135 1.73782 1.17266 0.92854 1.24372 1.84767 1.63072 1.26586 1.23051 1.25694 1.05043 1.00940 0.83726 1.21346 1.04605 0.93566 0.98022 1.20321 0.91718 1.01023 0.87496 1.62104 1.12493 1.15077 1.34127 1.22297 1.02131 0.88569 0.98571 1.19819 0.97629 0.92548 0.82537 0.94265 1.22848 0.97929 1.02310 1.01489 1.20899 0.89001 1.38002 1.05976 0.89964 1.24907 0.94850 0.95581 0.97812 1.69873 1.11675 1.44155 1.27987 0.86912 0.81318 0.78061 0.82141 1.20858 1.22424 1.19367 0.93580 0.92284 0.89264 0.91284 0.89776 0.77391 0.94207 0.90138 0.96494 0.93702 0.89987 0.93675 0.92395 0.95401 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.90 37.16 0.37 -1.92 16 2 C -0.04 -0.55 6.44 -27.88 -0.18 -0.73 16 3 C 0.04 0.66 6.58 -82.10 -0.54 0.12 16 4 N -0.38 -6.07 12.07 33.42 0.40 -5.67 16 5 O 0.09 1.28 11.20 17.17 0.19 1.47 16 6 C -0.07 -0.91 11.95 29.74 0.36 -0.55 16 7 C -0.17 -2.54 5.09 -104.42 -0.53 -3.07 16 8 C 0.12 1.94 4.90 -4.98 -0.02 1.91 16 9 N -0.52 -9.76 4.45 -237.72 -1.06 -10.82 16 10 C 0.03 0.58 8.45 60.07 0.51 1.09 16 11 C 0.18 4.01 1.89 -68.86 -0.13 3.87 16 12 H 0.04 0.90 6.92 -51.93 -0.36 0.54 16 13 C -0.19 -3.82 7.94 37.16 0.30 -3.52 16 14 C -0.50 -13.30 8.46 -34.44 -0.29 -13.59 16 15 H 0.08 2.41 7.39 -52.49 -0.39 2.02 16 16 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 17 N -0.90 -26.69 13.96 55.43 0.77 -25.91 16 18 Si 0.88 21.18 24.38 -169.99 -4.14 17.03 16 19 H -0.28 -6.61 6.87 56.52 0.39 -6.23 16 20 H -0.30 -7.19 7.11 56.52 0.40 -6.78 16 21 H -0.27 -6.11 6.53 56.52 0.37 -5.74 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.09 1.63 7.93 -51.93 -0.41 1.22 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.17 8.12 -51.93 -0.42 0.74 16 27 H 0.21 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.04 0.58 7.23 -51.92 -0.38 0.20 16 29 H 0.08 1.26 7.79 -51.93 -0.40 0.85 16 30 H 0.02 0.28 6.54 -51.93 -0.34 -0.06 16 31 H 0.04 0.73 7.28 -51.93 -0.38 0.35 16 32 H 0.08 1.67 6.71 -51.93 -0.35 1.32 16 33 H 0.04 0.98 3.28 -51.93 -0.17 0.81 16 34 H 0.06 1.16 6.47 -51.93 -0.34 0.83 16 35 H 0.03 0.48 7.05 -51.93 -0.37 0.12 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 287.09 15.07 4.33 4.33 Total: -1.00 -29.39 287.09 -4.94 -34.34 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.17 Total: -0.23 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.27 Total: -14.54 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.12 Total: -42.40 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.19 Total: 1.47 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.14 Total: 17.03 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.39 -4.94 -34.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293360104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.902 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds