Wall clock time and date at job start Sun Mar 29 2020 22:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50691 * 109.47450 * 2 1 4 4 N 1.30170 * 126.80512 * 268.05129 * 3 2 1 5 5 O 1.20923 * 111.61013 * 179.97438 * 4 3 2 6 6 C 1.34044 * 111.56188 * 359.76238 * 5 4 3 7 7 C 1.35453 * 106.44815 * 0.37838 * 6 5 4 8 8 C 1.50701 * 128.00976 * 179.91158 * 7 6 5 9 9 N 1.46897 * 109.46728 * 101.89418 * 8 7 6 10 10 C 1.46902 * 111.00525 * 288.38854 * 9 8 7 11 11 C 1.46907 * 110.99731 * 164.43568 * 9 8 7 12 12 H 1.08996 * 109.46925 * 310.00332 * 11 9 8 13 13 C 1.53005 * 109.46777 * 70.00061 * 11 9 8 14 14 C 1.50701 * 109.47201 * 190.00033 * 11 9 8 15 15 H 1.07995 * 119.99872 * 0.02562 * 14 11 9 16 16 C 1.37875 * 119.99932 * 179.97438 * 14 11 9 17 17 N 1.31510 * 119.99966 * 180.02562 * 16 14 11 18 18 Si 1.86803 * 119.99969 * 359.97438 * 16 14 11 19 19 H 1.48502 * 109.46557 * 90.00231 * 18 16 14 20 20 H 1.48494 * 109.47230 * 210.00017 * 18 16 14 21 21 H 1.48497 * 109.47261 * 330.00470 * 18 16 14 22 22 H 1.09004 * 109.46829 * 60.00099 * 1 2 3 23 23 H 1.09001 * 109.46816 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47059 * 300.00050 * 1 2 3 25 25 H 1.09004 * 109.47113 * 239.99979 * 2 1 3 26 26 H 1.08998 * 109.46790 * 120.00805 * 2 1 3 27 27 H 1.08000 * 126.77812 * 180.28772 * 6 5 4 28 28 H 1.09007 * 109.46781 * 341.89902 * 8 7 6 29 29 H 1.08992 * 109.47215 * 221.90122 * 8 7 6 30 30 H 1.09005 * 109.47019 * 302.42554 * 10 9 8 31 31 H 1.08997 * 109.47059 * 62.41630 * 10 9 8 32 32 H 1.08997 * 109.47243 * 182.42554 * 10 9 8 33 33 H 1.09003 * 109.46531 * 180.02562 * 13 11 9 34 34 H 1.08996 * 109.47171 * 60.00422 * 13 11 9 35 35 H 1.08996 * 109.47030 * 299.99355 * 13 11 9 36 36 H 0.97006 * 120.00247 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.3259 2.1441 -1.0416 5 8 2.7043 3.2481 -0.7249 6 6 2.7059 3.4052 0.6063 7 6 2.2779 2.2322 1.1314 8 6 2.0986 1.8767 2.5849 9 7 0.6732 1.9449 2.9334 10 6 0.2076 3.3375 2.9757 11 6 0.4096 1.2628 4.2075 12 1 0.8586 0.2698 4.1877 13 6 1.0153 2.0737 5.3549 14 6 -1.0782 1.1374 4.4117 15 1 -1.7598 1.5251 3.6691 16 6 -1.5693 0.5266 5.5461 17 7 -2.8676 0.4167 5.7241 18 14 -0.3904 -0.1461 6.8295 19 1 -0.0912 0.9108 7.8289 20 1 -1.0118 -1.3099 7.5109 21 1 0.8691 -0.5736 6.1690 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5140 0.8899 27 1 2.9932 4.2915 1.1525 28 1 2.6578 2.5797 3.2025 29 1 2.4676 0.8661 2.7599 30 1 0.8059 3.8991 3.6933 31 1 0.3110 3.7853 1.9873 32 1 -0.8394 3.3616 3.2779 33 1 0.8201 1.5673 6.3002 34 1 0.5663 3.0666 5.3748 35 1 2.0915 2.1643 5.2073 36 1 -3.2132 -0.0127 6.5223 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293360104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:31 Heat of formation + Delta-G solvation = 47.496929 kcal Electronic energy + Delta-G solvation = -17662.962594 eV Core-core repulsion = 14957.112436 eV Total energy + Delta-G solvation = -2705.850158 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.81116 -39.24514 -36.43972 -34.76622 -33.36738 -31.94003 -31.21956 -28.52006 -27.15970 -25.76204 -25.09760 -22.45554 -21.72990 -20.91022 -18.67778 -18.50273 -18.17256 -17.10158 -16.25300 -16.01048 -15.62216 -15.15043 -14.86945 -14.61474 -14.23858 -14.09364 -13.79541 -13.45080 -13.16666 -13.05839 -12.77328 -12.59834 -12.37351 -12.26543 -12.03222 -11.82454 -11.66296 -11.41226 -11.07088 -10.75252 -10.70012 -10.31078 -8.88474 -8.22842 -6.24797 0.66365 1.31872 1.33115 1.38885 1.48498 2.35693 2.48632 3.12063 3.24303 3.46699 3.73523 3.99725 4.23356 4.42158 4.44915 4.47432 4.49879 4.58946 4.62381 4.65882 4.78208 4.82021 4.86651 4.92136 5.04284 5.08382 5.16629 5.27001 5.29321 5.47681 5.51884 5.68192 6.08658 6.44384 6.74404 6.82557 7.39733 7.42796 8.94144 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033380 B = 0.007157 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.619437 B = 3911.210797 C = 4220.607381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.037 4.037 3 C 0.028 3.972 4 N -0.400 5.400 5 O 0.088 5.912 6 C -0.044 4.044 7 C -0.195 4.195 8 C 0.129 3.871 9 N -0.531 5.531 10 C 0.041 3.959 11 C 0.187 3.813 12 H 0.037 0.963 13 C -0.182 4.182 14 C -0.495 4.495 15 H 0.037 0.963 16 C 0.010 3.990 17 N -0.952 5.952 18 Si 0.948 3.052 19 H -0.271 1.271 20 H -0.304 1.304 21 H -0.244 1.244 22 H 0.042 0.958 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.253 0.747 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.133 4.251 -6.589 16.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.131 4.131 4 N -0.107 5.107 5 O 0.026 5.974 6 C -0.126 4.126 7 C -0.200 4.200 8 C 0.001 3.999 9 N -0.254 5.254 10 C -0.107 4.107 11 C 0.079 3.921 12 H 0.054 0.946 13 C -0.241 4.241 14 C -0.534 4.534 15 H 0.055 0.945 16 C -0.186 4.186 17 N -0.593 5.593 18 Si 0.776 3.224 19 H -0.197 1.197 20 H -0.232 1.232 21 H -0.168 1.168 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.269 0.731 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.724 3.740 -8.189 16.413 hybrid contribution 0.010 0.014 2.222 2.222 sum 13.733 3.755 -5.967 15.437 Atomic orbital electron populations 1.21641 0.94222 1.02335 1.01749 1.19871 0.96190 0.87878 1.03550 1.23751 1.00736 0.99962 0.88640 1.73787 1.18395 0.93543 1.24958 1.84745 1.62665 1.25951 1.24063 1.26423 1.02070 1.01293 0.82830 1.21317 1.06680 0.94577 0.97393 1.20285 0.89396 1.01876 0.88339 1.61932 1.15452 1.15524 1.32509 1.22175 1.00166 0.88474 0.99925 1.19573 0.94250 0.93342 0.84930 0.94561 1.22722 1.00157 1.01546 0.99674 1.21162 0.91410 1.36383 1.04412 0.94512 1.25750 0.96312 0.96252 1.00326 1.70044 1.14060 1.46216 1.28997 0.85879 0.79830 0.77234 0.79487 1.19719 1.23210 1.16788 0.93872 0.91233 0.92499 0.89934 0.89321 0.73104 0.91831 0.90094 0.94533 0.92047 0.93718 0.94817 0.92536 0.91671 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.90 71.98 0.71 -3.65 16 2 C -0.04 -1.02 6.44 29.85 0.19 -0.83 16 3 C 0.03 0.83 6.58 43.58 0.29 1.11 16 4 N -0.40 -12.18 12.07 -49.56 -0.60 -12.78 16 5 O 0.09 2.30 11.20 71.59 0.80 3.10 16 6 C -0.04 -0.94 11.95 67.18 0.80 -0.14 16 7 C -0.20 -5.22 5.09 -19.73 -0.10 -5.32 16 8 C 0.13 3.63 4.90 85.56 0.42 4.05 16 9 N -0.53 -19.33 4.45 -906.02 -4.03 -23.36 16 10 C 0.04 1.40 8.45 127.69 1.08 2.48 16 11 C 0.19 7.97 1.89 44.17 0.08 8.06 16 12 H 0.04 1.59 6.92 -2.39 -0.02 1.57 16 13 C -0.18 -6.85 7.94 71.98 0.57 -6.28 16 14 C -0.50 -26.91 8.46 25.60 0.22 -26.70 16 15 H 0.04 2.28 7.39 -2.91 -0.02 2.26 16 16 C 0.01 0.57 5.45 84.65 0.46 1.03 16 17 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 18 Si 0.95 43.29 24.38 68.60 1.67 44.97 16 19 H -0.27 -11.83 6.87 99.48 0.68 -11.15 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.24 -10.09 6.53 99.48 0.65 -9.44 16 22 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 25 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.09 2.35 8.12 -2.39 -0.02 2.33 16 27 H 0.25 2.87 8.06 -2.91 -0.02 2.84 16 28 H 0.06 1.51 7.23 -2.38 -0.02 1.49 16 29 H 0.08 2.27 7.79 -2.39 -0.02 2.25 16 30 H 0.04 1.09 6.54 -2.38 -0.02 1.08 16 31 H 0.06 1.87 7.28 -2.39 -0.02 1.85 16 32 H 0.04 1.85 6.71 -2.39 -0.02 1.83 16 33 H 0.03 1.34 3.28 -2.39 -0.01 1.34 16 34 H 0.06 2.12 6.47 -2.39 -0.02 2.10 16 35 H 0.06 1.96 7.05 -2.39 -0.02 1.95 16 36 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -65.70 287.09 3.86 -61.85 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.99 Total: 10.73 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 4.72 Total: -26.18 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -4.33 Total: -94.46 kcal Atomic # 8 Polarization: 2.30 SS G_CDS: 0.80 Total: 3.10 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.67 Total: 44.97 kcal Total: -65.70 3.86 -61.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293360104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.343 kcal (2) G-P(sol) polarization free energy of solvation -65.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds