Wall clock time and date at job start Sun Mar 29 2020 21:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00165 * 2 1 4 4 H 1.48504 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47437 * 299.99964 * 3 2 1 6 6 H 1.48504 * 109.47161 * 60.00328 * 3 2 1 7 7 C 1.37880 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00248 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47175 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99931 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.62771 * 31.89565 * 11 10 9 13 13 C 1.54532 * 110.85022 * 268.69417 * 11 10 9 14 14 C 1.51459 * 104.22458 * 220.90110 * 13 11 10 15 15 O 1.21281 * 125.31314 * 203.20673 * 14 13 11 16 16 N 1.33694 * 109.37598 * 23.19005 * 14 13 11 17 17 C 1.47549 * 127.24288 * 160.72244 * 16 14 13 18 18 C 1.53745 * 106.53986 * 238.00800 * 17 16 14 19 19 C 1.52822 * 109.83342 * 307.08274 * 18 17 16 20 20 C 1.53246 * 110.77201 * 61.61010 * 19 18 17 21 21 C 1.47480 * 111.45935 * 344.23432 * 16 14 13 22 22 H 1.08995 * 110.84941 * 241.55290 * 21 16 14 23 23 H 0.96997 * 119.99766 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46840 * 59.99639 * 9 7 2 25 25 H 1.09004 * 109.46964 * 300.00405 * 9 7 2 26 26 H 1.00898 * 111.00430 * 303.94830 * 10 9 7 27 27 H 1.08992 * 110.48196 * 339.58714 * 13 11 10 28 28 H 1.09001 * 110.47953 * 102.08837 * 13 11 10 29 29 H 1.08998 * 110.10252 * 118.70709 * 17 16 14 30 30 H 1.09005 * 109.95997 * 357.22412 * 17 16 14 31 31 H 1.09002 * 109.39863 * 186.99303 * 18 17 16 32 32 H 1.09003 * 109.39630 * 67.17288 * 18 17 16 33 33 H 1.09004 * 109.21494 * 181.93647 * 19 18 17 34 34 H 1.08996 * 109.21803 * 301.27455 * 19 18 17 35 35 H 1.08994 * 109.63674 * 57.72222 * 20 19 18 36 36 H 1.09004 * 109.63158 * 178.31024 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 1 0.5610 -4.8316 -0.5404 13 6 1.2714 -5.4067 1.4424 14 6 1.5578 -6.8923 1.3730 15 8 1.1302 -7.7255 2.1437 16 7 2.3552 -7.1421 0.3293 17 6 3.1886 -8.3395 0.1088 18 6 4.6364 -7.8438 -0.0393 19 6 4.7052 -6.7565 -1.1110 20 6 3.8475 -5.5494 -0.7163 21 6 2.3900 -6.0037 -0.6076 22 1 2.0116 -6.2958 -1.5872 23 1 -0.4849 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8404 -3.5488 -0.7819 27 1 1.9597 -4.9174 2.1314 28 1 0.2395 -5.2289 1.7450 29 1 2.8745 -8.8523 -0.8003 30 1 3.1093 -9.0107 0.9639 31 1 5.2768 -8.6774 -0.3277 32 1 4.9787 -7.4366 0.9121 33 1 5.7403 -6.4369 -1.2319 34 1 4.3425 -7.1608 -2.0560 35 1 4.1826 -5.1607 0.2452 36 1 3.9336 -4.7743 -1.4779 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300972828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:49 Heat of formation + Delta-G solvation = -35.826345 kcal Electronic energy + Delta-G solvation = -17419.154413 eV Core-core repulsion = 14709.691086 eV Total energy + Delta-G solvation = -2709.463327 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70971 -37.33865 -35.80622 -33.58905 -32.56280 -30.95757 -29.05286 -27.00364 -25.16476 -23.48316 -21.96988 -21.35392 -19.97793 -19.03099 -16.71917 -16.14920 -15.76959 -15.48413 -14.88564 -14.70393 -14.31405 -14.08683 -13.64507 -13.24657 -13.01595 -12.72687 -12.58666 -12.09810 -11.84292 -11.54069 -11.23691 -11.09765 -10.90916 -10.78259 -10.63903 -10.60432 -10.40707 -9.96707 -9.56919 -9.20008 -8.58133 -8.51276 -7.48352 -6.08787 -4.11205 2.77878 3.11367 3.27790 3.35631 3.39698 4.37079 4.53639 4.58829 4.76606 4.88938 4.93867 5.03155 5.13503 5.27583 5.28283 5.43499 5.52289 5.61989 5.74717 5.80939 5.83188 5.95543 5.98184 6.09638 6.17873 6.35225 6.45064 6.67142 7.15921 7.30878 7.31985 7.70562 8.04410 8.24462 8.38244 8.48513 8.97811 9.54237 11.02298 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035503 B = 0.005829 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.470881 B = 4802.106050 C = 5351.015718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.676 5.676 11 C 0.080 3.920 12 H 0.061 0.939 13 C -0.143 4.143 14 C 0.527 3.473 15 O -0.544 6.544 16 N -0.619 5.619 17 C 0.128 3.872 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.126 4.126 21 C 0.129 3.871 22 H 0.078 0.922 23 H 0.261 0.739 24 H -0.011 1.011 25 H 0.030 0.970 26 H 0.335 0.665 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.746 -13.235 -3.437 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.065 3.935 10 N -0.309 5.309 11 C -0.032 4.032 12 H 0.079 0.921 13 C -0.184 4.184 14 C 0.316 3.684 15 O -0.422 6.422 16 N -0.354 5.354 17 C 0.006 3.994 18 C -0.174 4.174 19 C -0.157 4.157 20 C -0.164 4.164 21 C 0.024 3.976 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.007 0.993 25 H 0.049 0.951 26 H 0.155 0.845 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.462 -13.622 -2.357 15.710 hybrid contribution 0.042 0.971 -0.968 1.372 sum 7.503 -12.651 -3.325 15.080 Atomic orbital electron populations 1.69966 1.06091 1.26789 1.50702 1.24985 0.94865 0.99406 0.95259 0.86433 0.80028 0.83344 0.77539 1.19660 1.21105 1.20982 1.21180 0.93530 0.90115 1.50584 0.91862 1.19652 0.90581 0.87189 0.96060 1.60940 1.20796 1.00029 1.49146 1.22064 0.96006 0.90693 0.94393 0.92150 1.22513 1.04724 0.91596 0.99583 1.20915 0.77041 0.91227 0.79222 1.90672 1.53402 1.52988 1.45097 1.48588 1.44716 1.17919 1.24205 1.21750 0.89206 0.86531 1.01902 1.21999 0.96099 0.99018 1.00269 1.21501 1.00342 0.95687 0.98137 1.21909 0.93500 0.97224 1.03782 1.21916 0.96797 0.86155 0.92693 0.90356 0.92892 0.99311 0.95145 0.84493 0.86594 0.88780 0.91403 0.89729 0.91063 0.91406 0.91643 0.92215 0.89648 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -13.89 9.32 -34.44 -0.32 -14.21 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.19 4.69 5.30 -4.98 -0.03 4.66 16 10 N -0.68 -12.88 5.61 -106.92 -0.60 -13.48 16 11 C 0.08 1.30 3.36 -66.69 -0.22 1.07 16 12 H 0.06 1.02 7.82 -51.93 -0.41 0.61 16 13 C -0.14 -2.37 6.66 -26.71 -0.18 -2.55 16 14 C 0.53 8.85 8.03 -11.09 -0.09 8.76 16 15 O -0.54 -10.80 17.79 5.56 0.10 -10.70 16 16 N -0.62 -8.59 2.94 -163.80 -0.48 -9.07 16 17 C 0.13 1.41 6.95 -3.08 -0.02 1.39 16 18 C -0.14 -1.28 6.07 -26.44 -0.16 -1.44 16 19 C -0.12 -1.14 5.77 -26.70 -0.15 -1.29 16 20 C -0.13 -1.49 4.27 -26.58 -0.11 -1.61 16 21 C 0.13 1.70 3.54 -67.16 -0.24 1.46 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H -0.01 -0.28 8.08 -51.93 -0.42 -0.70 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.33 5.93 6.20 -39.29 -0.24 5.69 16 27 H 0.12 1.99 8.05 -51.93 -0.42 1.57 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.98 7.96 -51.93 -0.41 0.56 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 36 H 0.08 0.90 6.87 -51.93 -0.36 0.55 16 LS Contribution 289.37 15.07 4.36 4.36 Total: -1.00 -30.56 289.37 -8.12 -38.68 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.60 Total: 1.78 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.62 Total: -2.29 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.34 Total: -47.88 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.10 Total: -10.70 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.56 -8.12 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300972828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.858 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds