Wall clock time and date at job start Sun Mar 29 2020 21:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00165 * 2 1 4 4 H 1.48504 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47437 * 299.99964 * 3 2 1 6 6 H 1.48504 * 109.47161 * 60.00328 * 3 2 1 7 7 C 1.37880 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00248 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47175 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99931 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.62771 * 31.89565 * 11 10 9 13 13 C 1.54532 * 110.85022 * 268.69417 * 11 10 9 14 14 C 1.51459 * 104.22458 * 220.90110 * 13 11 10 15 15 O 1.21281 * 125.31314 * 203.20673 * 14 13 11 16 16 N 1.33694 * 109.37598 * 23.19005 * 14 13 11 17 17 C 1.47549 * 127.24288 * 160.72244 * 16 14 13 18 18 C 1.53745 * 106.53986 * 238.00800 * 17 16 14 19 19 C 1.52822 * 109.83342 * 307.08274 * 18 17 16 20 20 C 1.53246 * 110.77201 * 61.61010 * 19 18 17 21 21 C 1.47480 * 111.45935 * 344.23432 * 16 14 13 22 22 H 1.08995 * 110.84941 * 241.55290 * 21 16 14 23 23 H 0.96997 * 119.99766 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46840 * 59.99639 * 9 7 2 25 25 H 1.09004 * 109.46964 * 300.00405 * 9 7 2 26 26 H 1.00898 * 111.00430 * 303.94830 * 10 9 7 27 27 H 1.08992 * 110.48196 * 339.58714 * 13 11 10 28 28 H 1.09001 * 110.47953 * 102.08837 * 13 11 10 29 29 H 1.08998 * 110.10252 * 118.70709 * 17 16 14 30 30 H 1.09005 * 109.95997 * 357.22412 * 17 16 14 31 31 H 1.09002 * 109.39863 * 186.99303 * 18 17 16 32 32 H 1.09003 * 109.39630 * 67.17288 * 18 17 16 33 33 H 1.09004 * 109.21494 * 181.93647 * 19 18 17 34 34 H 1.08996 * 109.21803 * 301.27455 * 19 18 17 35 35 H 1.08994 * 109.63674 * 57.72222 * 20 19 18 36 36 H 1.09004 * 109.63158 * 178.31024 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 1 0.5610 -4.8316 -0.5404 13 6 1.2714 -5.4067 1.4424 14 6 1.5578 -6.8923 1.3730 15 8 1.1302 -7.7255 2.1437 16 7 2.3552 -7.1421 0.3293 17 6 3.1886 -8.3395 0.1088 18 6 4.6364 -7.8438 -0.0393 19 6 4.7052 -6.7565 -1.1110 20 6 3.8475 -5.5494 -0.7163 21 6 2.3900 -6.0037 -0.6076 22 1 2.0116 -6.2958 -1.5872 23 1 -0.4849 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8404 -3.5488 -0.7819 27 1 1.9597 -4.9174 2.1314 28 1 0.2395 -5.2289 1.7450 29 1 2.8745 -8.8523 -0.8003 30 1 3.1093 -9.0107 0.9639 31 1 5.2768 -8.6774 -0.3277 32 1 4.9787 -7.4366 0.9121 33 1 5.7403 -6.4369 -1.2319 34 1 4.3425 -7.1608 -2.0560 35 1 4.1826 -5.1607 0.2452 36 1 3.9336 -4.7743 -1.4779 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300972828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:49 Heat of formation + Delta-G solvation = -56.262886 kcal Electronic energy + Delta-G solvation = -17420.040608 eV Core-core repulsion = 14709.691086 eV Total energy + Delta-G solvation = -2710.349521 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.93407 -38.66543 -37.15557 -35.15662 -34.13530 -32.32752 -30.25696 -28.67269 -26.62763 -24.49140 -23.84513 -22.37735 -21.32091 -20.15800 -18.58263 -17.54457 -17.08186 -16.69691 -16.64042 -16.12254 -15.45552 -15.26089 -14.89765 -14.54805 -14.42078 -14.05039 -13.95914 -13.60742 -13.48934 -12.90208 -12.75233 -12.55564 -12.30604 -12.18124 -11.95077 -11.71795 -11.59333 -11.48985 -11.21880 -10.87754 -10.64087 -9.67636 -9.15640 -8.19871 -6.30029 1.43781 1.44022 1.45279 1.57976 1.99353 2.42353 3.14861 3.24810 3.42928 3.54853 3.83691 4.00295 4.01842 4.18431 4.30259 4.34594 4.40803 4.60842 4.68577 4.74625 4.89146 4.94239 4.99934 5.08301 5.18125 5.24700 5.25545 5.30060 5.52735 5.59448 5.65912 6.04827 6.08251 6.42928 6.72763 6.92380 7.09267 7.41079 8.91886 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035503 B = 0.005829 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.470881 B = 4802.106050 C = 5351.015718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.068 0.932 9 C 0.207 3.793 10 N -0.668 5.668 11 C 0.078 3.922 12 H 0.054 0.946 13 C -0.143 4.143 14 C 0.525 3.475 15 O -0.580 6.580 16 N -0.611 5.611 17 C 0.120 3.880 18 C -0.130 4.130 19 C -0.114 4.114 20 C -0.124 4.124 21 C 0.135 3.865 22 H 0.103 0.897 23 H 0.264 0.736 24 H -0.033 1.033 25 H 0.000 1.000 26 H 0.346 0.654 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.840 -13.773 -4.853 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.079 3.921 10 N -0.302 5.302 11 C -0.033 4.033 12 H 0.072 0.928 13 C -0.184 4.184 14 C 0.314 3.686 15 O -0.461 6.461 16 N -0.344 5.344 17 C 0.000 4.000 18 C -0.168 4.168 19 C -0.151 4.151 20 C -0.163 4.163 21 C 0.031 3.969 22 H 0.121 0.879 23 H 0.072 0.928 24 H -0.015 1.015 25 H 0.018 0.982 26 H 0.168 0.832 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.604 -14.181 -3.808 17.545 hybrid contribution -0.611 1.086 -0.533 1.355 sum 8.992 -13.095 -4.341 16.468 Atomic orbital electron populations 1.70094 1.07807 1.27828 1.51777 1.25908 0.95687 1.03286 0.94796 0.85325 0.79109 0.78597 0.77495 1.18422 1.20492 1.20913 1.21564 0.93933 0.91226 1.50117 0.91381 1.19273 0.90647 0.88641 0.93532 1.60738 1.19805 0.99814 1.49811 1.22042 0.96404 0.90412 0.94468 0.92788 1.22442 1.04086 0.92153 0.99695 1.20796 0.77472 0.90673 0.79654 1.90647 1.55117 1.53646 1.46707 1.48687 1.43755 1.18947 1.23024 1.22070 0.89777 0.85369 1.02748 1.21977 0.95102 0.99949 0.99724 1.21481 1.00559 0.94375 0.98690 1.21885 0.92664 0.98714 1.02999 1.21944 0.97282 0.84748 0.92927 0.87947 0.92754 1.01537 0.98174 0.83247 0.87465 0.89611 0.88968 0.90450 0.88150 0.92833 0.90299 0.90486 0.91697 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 43.00 29.54 68.60 2.03 45.02 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.53 -28.69 9.32 25.60 0.24 -28.45 16 8 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 10.38 5.30 85.56 0.45 10.84 16 10 N -0.67 -25.52 5.61 -492.17 -2.76 -28.28 16 11 C 0.08 2.53 3.36 45.57 0.15 2.69 16 12 H 0.05 1.85 7.82 -2.39 -0.02 1.83 16 13 C -0.14 -4.86 6.66 30.61 0.20 -4.66 16 14 C 0.53 17.70 8.03 88.07 0.71 18.40 16 15 O -0.58 -23.39 17.79 -3.03 -0.05 -23.44 16 16 N -0.61 -16.05 2.94 -791.13 -2.32 -18.37 16 17 C 0.12 2.34 6.95 86.43 0.60 2.94 16 18 C -0.13 -2.01 6.07 30.79 0.19 -1.82 16 19 C -0.11 -1.73 5.77 30.62 0.18 -1.56 16 20 C -0.12 -2.65 4.27 30.69 0.13 -2.52 16 21 C 0.13 3.30 3.54 44.96 0.16 3.46 16 22 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 24 H -0.03 -1.78 8.08 -2.38 -0.02 -1.80 16 25 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 26 H 0.35 11.95 6.20 -89.70 -0.56 11.39 16 27 H 0.11 3.83 8.05 -2.39 -0.02 3.81 16 28 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.66 7.96 -2.38 -0.02 1.64 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.68 7.92 -2.39 -0.02 1.66 16 36 H 0.08 1.72 6.87 -2.39 -0.02 1.70 16 Total: -1.00 -66.52 289.37 1.15 -65.37 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.50 Total: 14.80 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 3.47 Total: -0.14 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -4.80 Total: -101.60 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.52 1.15 -65.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300972828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.104 kcal (2) G-P(sol) polarization free energy of solvation -66.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds