Wall clock time and date at job start Sun Mar 29 2020 21:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99961 * 2 1 4 4 H 1.48498 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46969 * 300.00003 * 3 2 1 6 6 H 1.48498 * 109.47168 * 59.99568 * 3 2 1 7 7 C 1.37874 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99949 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00296 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47307 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00019 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.62877 * 323.34899 * 11 10 9 13 13 C 1.54541 * 110.70473 * 86.45856 * 11 10 9 14 14 C 1.51499 * 104.01720 * 139.52672 * 13 11 10 15 15 O 1.21280 * 125.39865 * 154.84469 * 14 13 11 16 16 N 1.33676 * 109.20857 * 334.86412 * 14 13 11 17 17 C 1.47391 * 127.75558 * 199.40028 * 16 14 13 18 18 C 1.53744 * 106.73402 * 124.94179 * 17 16 14 19 19 C 1.53054 * 109.76747 * 52.78125 * 18 17 16 20 20 C 1.53237 * 110.79603 * 298.57840 * 19 18 17 21 21 C 1.47708 * 111.09289 * 18.55869 * 16 14 13 22 22 H 1.08997 * 110.31081 * 115.66243 * 21 16 14 23 23 H 0.96999 * 120.00709 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47331 * 59.99324 * 9 7 2 25 25 H 1.09005 * 109.46671 * 299.99447 * 9 7 2 26 26 H 1.00907 * 110.99583 * 56.04792 * 10 9 7 27 27 H 1.08999 * 110.52428 * 20.89144 * 13 11 10 28 28 H 1.09010 * 110.52042 * 258.15715 * 13 11 10 29 29 H 1.09002 * 110.01693 * 244.27729 * 17 16 14 30 30 H 1.09003 * 110.01375 * 5.61402 * 17 16 14 31 31 H 1.08998 * 109.40081 * 172.99891 * 18 17 16 32 32 H 1.09000 * 109.40011 * 292.74867 * 18 17 16 33 33 H 1.09000 * 109.18894 * 178.23944 * 19 18 17 34 34 H 1.09009 * 109.19904 * 58.92270 * 19 18 17 35 35 H 1.08998 * 109.62691 * 302.31068 * 20 19 18 36 36 H 1.08996 * 109.62517 * 181.74091 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 1 0.6030 -4.8543 0.6104 13 6 1.1659 -5.3452 -1.4414 14 6 1.4454 -6.8342 -1.4481 15 8 0.9344 -7.6416 -2.1950 16 7 2.3442 -7.1172 -0.4999 17 6 3.1944 -8.3163 -0.3914 18 6 4.6473 -7.8219 -0.2991 19 6 4.7723 -6.7893 0.8237 20 6 3.8877 -5.5701 0.5426 21 6 2.4283 -6.0285 0.4948 22 1 2.1021 -6.3833 1.4724 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8405 -3.5486 0.7820 27 1 1.8082 -4.8327 -2.1576 28 1 0.1159 -5.1526 -1.6623 29 1 2.9339 -8.8784 0.5054 30 1 3.0692 -8.9435 -1.2741 31 1 5.3046 -8.6665 -0.0924 32 1 4.9347 -7.3639 -1.2455 33 1 5.8112 -6.4687 0.9015 34 1 4.4666 -7.2451 1.7656 35 1 4.1646 -5.1299 -0.4153 36 1 4.0146 -4.8347 1.3370 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300972829.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:51 Heat of formation + Delta-G solvation = -35.921176 kcal Electronic energy + Delta-G solvation = -17420.109319 eV Core-core repulsion = 14710.641880 eV Total energy + Delta-G solvation = -2709.467439 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68691 -37.32526 -35.80381 -33.57548 -32.55633 -30.96425 -29.02724 -27.01082 -25.16654 -23.46177 -21.97085 -21.33000 -19.94569 -19.04190 -16.69689 -16.16260 -15.75109 -15.48483 -14.90105 -14.70456 -14.32323 -14.06489 -13.61903 -13.24905 -12.98692 -12.74459 -12.58048 -12.09852 -11.84563 -11.52041 -11.22282 -11.09437 -10.90656 -10.78348 -10.62173 -10.61009 -10.39583 -9.96016 -9.55285 -9.20557 -8.57704 -8.50757 -7.48511 -6.08579 -4.11041 2.77461 3.11468 3.27887 3.35734 3.39782 4.37152 4.54837 4.59728 4.77493 4.89623 4.94448 5.03646 5.14016 5.27913 5.28770 5.44284 5.52802 5.62551 5.75652 5.81190 5.84347 5.96483 5.99191 6.10716 6.17942 6.35804 6.47987 6.68386 7.16098 7.30906 7.32221 7.70587 8.04497 8.24276 8.38775 8.48572 8.97947 9.54410 11.02489 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035187 B = 0.005859 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.552541 B = 4778.117440 C = 5339.698364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.675 5.675 11 C 0.080 3.920 12 H 0.058 0.942 13 C -0.142 4.142 14 C 0.528 3.472 15 O -0.543 6.543 16 N -0.621 5.621 17 C 0.129 3.871 18 C -0.135 4.135 19 C -0.119 4.119 20 C -0.122 4.122 21 C 0.130 3.870 22 H 0.077 0.923 23 H 0.261 0.739 24 H 0.031 0.969 25 H -0.011 1.011 26 H 0.334 0.666 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.980 -13.278 2.892 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.065 3.935 10 N -0.308 5.308 11 C -0.032 4.032 12 H 0.076 0.924 13 C -0.183 4.183 14 C 0.316 3.684 15 O -0.421 6.421 16 N -0.357 5.357 17 C 0.007 3.993 18 C -0.173 4.173 19 C -0.157 4.157 20 C -0.161 4.161 21 C 0.026 3.974 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.007 0.993 26 H 0.154 0.846 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.667 -13.649 1.804 15.758 hybrid contribution 0.025 0.948 0.975 1.360 sum 7.691 -12.701 2.778 15.106 Atomic orbital electron populations 1.69963 1.06090 1.26793 1.50704 1.24982 0.94860 0.99400 0.95265 0.86435 0.80028 0.83358 0.77537 1.19660 1.20986 1.21109 1.21178 0.93529 0.90109 1.50578 0.91859 1.19642 0.90590 0.87167 0.96076 1.60943 1.20781 1.00021 1.49045 1.22046 0.95533 0.90745 0.94861 0.92412 1.22519 1.04415 0.91766 0.99617 1.20931 0.77546 0.91101 0.78789 1.90671 1.52425 1.54932 1.44054 1.48589 1.39781 1.19930 1.27361 1.21693 0.88999 0.86340 1.02242 1.22019 0.95893 0.99270 1.00088 1.21546 1.00190 0.95974 0.97989 1.21856 0.93033 0.97061 1.04140 1.21938 0.96761 0.87078 0.91578 0.90512 0.92891 0.95118 0.99331 0.84590 0.86550 0.88800 0.91611 0.89821 0.91067 0.91380 0.91664 0.92273 0.89533 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -13.87 9.32 -34.44 -0.32 -14.19 16 8 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 9 C 0.19 4.68 5.29 -4.98 -0.03 4.66 16 10 N -0.67 -12.82 5.48 -106.92 -0.59 -13.41 16 11 C 0.08 1.29 3.32 -66.70 -0.22 1.07 16 12 H 0.06 0.97 7.89 -51.93 -0.41 0.56 16 13 C -0.14 -2.37 6.60 -26.68 -0.18 -2.55 16 14 C 0.53 8.90 8.01 -11.08 -0.09 8.81 16 15 O -0.54 -10.84 17.86 5.56 0.10 -10.74 16 16 N -0.62 -8.66 2.94 -163.75 -0.48 -9.14 16 17 C 0.13 1.43 6.95 -3.17 -0.02 1.41 16 18 C -0.13 -1.27 6.09 -26.32 -0.16 -1.43 16 19 C -0.12 -1.14 5.78 -26.58 -0.15 -1.29 16 20 C -0.12 -1.46 4.30 -26.59 -0.11 -1.57 16 21 C 0.13 1.72 3.54 -67.04 -0.24 1.48 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.03 0.82 8.13 -51.93 -0.42 0.40 16 25 H -0.01 -0.29 8.08 -51.93 -0.42 -0.71 16 26 H 0.33 5.91 6.45 -39.29 -0.25 5.66 16 27 H 0.12 2.02 8.05 -51.93 -0.42 1.60 16 28 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.09 1.19 7.89 -51.93 -0.41 0.78 16 36 H 0.08 0.89 6.93 -51.93 -0.36 0.53 16 LS Contribution 289.65 15.07 4.37 4.37 Total: -1.00 -30.54 289.65 -8.12 -38.66 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.61 Total: 1.70 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.62 Total: -2.14 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.33 Total: -47.89 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.10 Total: -10.74 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.54 -8.12 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300972829.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.738 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds