Wall clock time and date at job start Sun Mar 29 2020 21:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99961 * 2 1 4 4 H 1.48498 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46969 * 300.00003 * 3 2 1 6 6 H 1.48498 * 109.47168 * 59.99568 * 3 2 1 7 7 C 1.37874 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99949 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00296 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47307 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00019 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.62877 * 323.34899 * 11 10 9 13 13 C 1.54541 * 110.70473 * 86.45856 * 11 10 9 14 14 C 1.51499 * 104.01720 * 139.52672 * 13 11 10 15 15 O 1.21280 * 125.39865 * 154.84469 * 14 13 11 16 16 N 1.33676 * 109.20857 * 334.86412 * 14 13 11 17 17 C 1.47391 * 127.75558 * 199.40028 * 16 14 13 18 18 C 1.53744 * 106.73402 * 124.94179 * 17 16 14 19 19 C 1.53054 * 109.76747 * 52.78125 * 18 17 16 20 20 C 1.53237 * 110.79603 * 298.57840 * 19 18 17 21 21 C 1.47708 * 111.09289 * 18.55869 * 16 14 13 22 22 H 1.08997 * 110.31081 * 115.66243 * 21 16 14 23 23 H 0.96999 * 120.00709 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47331 * 59.99324 * 9 7 2 25 25 H 1.09005 * 109.46671 * 299.99447 * 9 7 2 26 26 H 1.00907 * 110.99583 * 56.04792 * 10 9 7 27 27 H 1.08999 * 110.52428 * 20.89144 * 13 11 10 28 28 H 1.09010 * 110.52042 * 258.15715 * 13 11 10 29 29 H 1.09002 * 110.01693 * 244.27729 * 17 16 14 30 30 H 1.09003 * 110.01375 * 5.61402 * 17 16 14 31 31 H 1.08998 * 109.40081 * 172.99891 * 18 17 16 32 32 H 1.09000 * 109.40011 * 292.74867 * 18 17 16 33 33 H 1.09000 * 109.18894 * 178.23944 * 19 18 17 34 34 H 1.09009 * 109.19904 * 58.92270 * 19 18 17 35 35 H 1.08998 * 109.62691 * 302.31068 * 20 19 18 36 36 H 1.08996 * 109.62517 * 181.74091 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 1 0.6030 -4.8543 0.6104 13 6 1.1659 -5.3452 -1.4414 14 6 1.4454 -6.8342 -1.4481 15 8 0.9344 -7.6416 -2.1950 16 7 2.3442 -7.1172 -0.4999 17 6 3.1944 -8.3163 -0.3914 18 6 4.6473 -7.8219 -0.2991 19 6 4.7723 -6.7893 0.8237 20 6 3.8877 -5.5701 0.5426 21 6 2.4283 -6.0285 0.4948 22 1 2.1021 -6.3833 1.4724 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8405 -3.5486 0.7820 27 1 1.8082 -4.8327 -2.1576 28 1 0.1159 -5.1526 -1.6623 29 1 2.9339 -8.8784 0.5054 30 1 3.0692 -8.9435 -1.2741 31 1 5.3046 -8.6665 -0.0924 32 1 4.9347 -7.3639 -1.2455 33 1 5.8112 -6.4687 0.9015 34 1 4.4666 -7.2451 1.7656 35 1 4.1646 -5.1299 -0.4153 36 1 4.0146 -4.8347 1.3370 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300972829.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:51 Heat of formation + Delta-G solvation = -56.320133 kcal Electronic energy + Delta-G solvation = -17420.993884 eV Core-core repulsion = 14710.641880 eV Total energy + Delta-G solvation = -2710.352004 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.91758 -38.65534 -37.15713 -35.14710 -34.12624 -32.33140 -30.23838 -28.68083 -26.63034 -24.47138 -23.84559 -22.35499 -21.29430 -20.17337 -18.56995 -17.54949 -17.07374 -16.68703 -16.65638 -16.15947 -15.43201 -15.25996 -14.87430 -14.53168 -14.42030 -14.04140 -13.96492 -13.60611 -13.49897 -12.88885 -12.75455 -12.56030 -12.31213 -12.18068 -11.94365 -11.70799 -11.58049 -11.47222 -11.21188 -10.87276 -10.63955 -9.67334 -9.15715 -8.19664 -6.29827 1.42639 1.43836 1.45289 1.58023 1.99138 2.42419 3.15082 3.25377 3.42820 3.55339 3.84260 4.00210 4.02476 4.19408 4.30718 4.35170 4.41355 4.60854 4.69161 4.73982 4.88925 4.94800 5.00991 5.09584 5.18028 5.26105 5.27017 5.30555 5.54946 5.60279 5.66175 6.04959 6.07736 6.42902 6.72888 6.92561 7.09186 7.41285 8.92084 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035187 B = 0.005859 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.552541 B = 4778.117440 C = 5339.698364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.068 0.932 9 C 0.207 3.793 10 N -0.666 5.666 11 C 0.078 3.922 12 H 0.053 0.947 13 C -0.142 4.142 14 C 0.526 3.474 15 O -0.580 6.580 16 N -0.613 5.613 17 C 0.121 3.879 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.121 4.121 21 C 0.137 3.863 22 H 0.102 0.898 23 H 0.264 0.736 24 H 0.001 0.999 25 H -0.034 1.034 26 H 0.346 0.654 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.185 -13.872 4.222 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.079 3.921 10 N -0.300 5.300 11 C -0.033 4.033 12 H 0.071 0.929 13 C -0.183 4.183 14 C 0.314 3.686 15 O -0.461 6.461 16 N -0.347 5.347 17 C 0.001 3.999 18 C -0.166 4.166 19 C -0.151 4.151 20 C -0.159 4.159 21 C 0.033 3.967 22 H 0.120 0.880 23 H 0.072 0.928 24 H 0.019 0.981 25 H -0.016 1.016 26 H 0.167 0.833 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.922 -14.264 3.166 17.662 hybrid contribution -0.659 1.080 0.564 1.386 sum 9.263 -13.184 3.730 16.539 Atomic orbital electron populations 1.70092 1.07813 1.27825 1.51803 1.25906 0.95680 1.03288 0.94813 0.85326 0.79122 0.78608 0.77478 1.18398 1.20926 1.20521 1.21565 0.93942 0.91212 1.50075 0.91350 1.19263 0.90659 0.88636 0.93536 1.60742 1.19764 0.99782 1.49688 1.22034 0.96112 0.90536 0.94655 0.92931 1.22448 1.03733 0.92340 0.99795 1.20806 0.78056 0.90573 0.79116 1.90646 1.54071 1.55573 1.45775 1.48691 1.38774 1.20934 1.26255 1.22014 0.89504 0.85258 1.03098 1.22000 0.94913 1.00209 0.99509 1.21525 1.00311 0.94680 0.98625 1.21832 0.92280 0.98527 1.03291 1.21977 0.97093 0.85645 0.91962 0.88030 0.92764 0.98112 1.01625 0.83333 0.87519 0.89730 0.89219 0.90522 0.88148 0.92794 0.90321 0.90525 0.91683 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -28.64 9.32 25.60 0.24 -28.40 16 8 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 10.37 5.29 85.56 0.45 10.83 16 10 N -0.67 -25.37 5.48 -492.17 -2.70 -28.07 16 11 C 0.08 2.52 3.32 45.57 0.15 2.68 16 12 H 0.05 1.79 7.89 -2.39 -0.02 1.77 16 13 C -0.14 -4.89 6.60 30.63 0.20 -4.69 16 14 C 0.53 17.83 8.01 88.08 0.71 18.53 16 15 O -0.58 -23.52 17.86 -3.03 -0.05 -23.57 16 16 N -0.61 -16.18 2.94 -790.99 -2.32 -18.51 16 17 C 0.12 2.38 6.95 86.46 0.60 2.98 16 18 C -0.13 -1.99 6.09 30.86 0.19 -1.81 16 19 C -0.11 -1.74 5.78 30.69 0.18 -1.56 16 20 C -0.12 -2.58 4.30 30.69 0.13 -2.45 16 21 C 0.14 3.35 3.54 44.91 0.16 3.51 16 22 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 24 H 0.00 0.04 8.13 -2.39 -0.02 0.02 16 25 H -0.03 -1.83 8.08 -2.38 -0.02 -1.85 16 26 H 0.35 11.89 6.45 -89.69 -0.58 11.31 16 27 H 0.11 3.86 8.05 -2.39 -0.02 3.84 16 28 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.64 8.03 -2.39 -0.02 1.62 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.06 1.69 7.89 -2.39 -0.02 1.68 16 36 H 0.08 1.70 6.93 -2.39 -0.02 1.69 16 Total: -1.00 -66.56 289.65 1.19 -65.37 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.48 Total: 14.60 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 3.47 Total: 0.15 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -4.74 Total: -101.59 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -66.56 1.19 -65.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300972829.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.050 kcal (2) G-P(sol) polarization free energy of solvation -66.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds