Wall clock time and date at job start Sun Mar 29 2020 21:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99758 * 2 1 4 4 H 1.48503 * 109.46847 * 269.99865 * 3 2 1 5 5 H 1.48497 * 109.47500 * 29.99721 * 3 2 1 6 6 H 1.48502 * 109.47349 * 150.00227 * 3 2 1 7 7 C 1.37871 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00418 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99946 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.46906 * 111.00071 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.62207 * 328.09909 * 11 10 9 13 13 C 1.54524 * 110.70238 * 91.38130 * 11 10 9 14 14 C 1.51440 * 104.21990 * 97.75203 * 13 11 10 15 15 O 1.21276 * 125.30174 * 203.28281 * 14 13 11 16 16 N 1.33741 * 109.40331 * 23.25359 * 14 13 11 17 17 C 1.47460 * 127.07567 * 160.55164 * 16 14 13 18 18 C 1.53577 * 107.02268 * 236.60407 * 17 16 14 19 19 C 1.52828 * 110.18332 * 308.58997 * 18 17 16 20 20 C 1.53483 * 110.44413 * 61.42483 * 19 18 17 21 21 C 1.47544 * 111.38392 * 344.13597 * 16 14 13 22 22 H 1.09001 * 111.06301 * 241.39333 * 21 16 14 23 23 H 0.97000 * 120.00273 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47315 * 60.00490 * 9 7 2 25 25 H 1.08996 * 109.47653 * 300.00019 * 9 7 2 26 26 H 1.00901 * 111.00328 * 303.95315 * 10 9 7 27 27 H 1.08995 * 110.47928 * 216.43606 * 13 11 10 28 28 H 1.08998 * 110.47923 * 339.06933 * 13 11 10 29 29 H 1.08997 * 109.94324 * 117.22752 * 17 16 14 30 30 H 1.08994 * 110.01491 * 356.01518 * 17 16 14 31 31 H 1.09000 * 109.35251 * 188.37594 * 18 17 16 32 32 H 1.08993 * 109.23657 * 68.73345 * 18 17 16 33 33 H 1.09004 * 109.30968 * 301.13092 * 19 18 17 34 34 H 1.08998 * 109.15246 * 181.62436 * 19 18 17 35 35 H 1.09008 * 109.77579 * 177.01290 * 20 19 18 36 36 H 1.08994 * 109.81622 * 56.24240 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6156 0.0027 11 6 1.5055 -4.9071 0.0032 12 1 0.5610 -4.8314 0.5420 13 6 1.2763 -5.4048 -1.4416 14 6 2.4096 -6.3797 -1.6834 15 8 2.8447 -6.6927 -2.7714 16 7 2.8564 -6.8414 -0.5105 17 6 3.6457 -8.0653 -0.2793 18 6 2.8625 -8.9222 0.7261 19 6 2.4877 -8.0879 1.9505 20 6 1.5856 -6.9146 1.5440 21 6 2.3899 -6.0032 0.6106 22 1 3.2305 -5.5601 1.1447 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8407 -3.5493 -0.7787 27 1 0.3142 -5.9106 -1.5225 28 1 1.3316 -4.5736 -2.1445 29 1 4.6209 -7.8065 0.1331 30 1 3.7707 -8.6109 -1.2146 31 1 3.4782 -9.7656 1.0386 32 1 1.9549 -9.2939 0.2508 33 1 3.3950 -7.7009 2.4145 34 1 1.9585 -8.7187 2.6647 35 1 1.2819 -6.3583 2.4310 36 1 0.7039 -7.2892 1.0241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300972830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:53 Heat of formation + Delta-G solvation = -41.809050 kcal Electronic energy + Delta-G solvation = -17333.337318 eV Core-core repulsion = 14623.614562 eV Total energy + Delta-G solvation = -2709.722756 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69902 -37.23865 -35.97515 -33.45642 -32.41955 -31.29538 -28.90149 -26.91568 -25.29565 -23.45909 -21.82985 -20.91470 -20.76576 -19.05610 -16.75059 -16.14199 -15.59392 -15.48362 -14.85496 -14.57375 -14.31313 -14.22440 -13.64446 -13.26739 -13.17404 -12.73985 -12.42054 -12.03923 -11.77332 -11.64362 -11.31082 -11.09770 -11.05411 -10.90146 -10.73491 -10.67626 -10.51980 -9.94885 -9.54220 -9.23896 -8.53963 -8.50538 -7.48000 -6.07612 -4.09785 2.76305 3.14173 3.30604 3.36797 3.41115 4.38515 4.50327 4.58942 4.72180 4.81782 4.97152 4.98548 5.24990 5.26637 5.29112 5.32750 5.50420 5.60212 5.70032 5.76434 5.81880 5.87341 5.89425 5.97240 6.07179 6.24071 6.34631 6.68817 7.12183 7.32353 7.35058 7.71536 8.04588 8.23713 8.37796 8.49036 8.98700 9.55585 11.03367 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037714 B = 0.005485 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.244995 B = 5103.344358 C = 5386.952914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.678 5.678 11 C 0.084 3.916 12 H 0.099 0.901 13 C -0.187 4.187 14 C 0.527 3.473 15 O -0.543 6.543 16 N -0.621 5.621 17 C 0.128 3.872 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.128 4.128 21 C 0.135 3.865 22 H 0.098 0.902 23 H 0.262 0.738 24 H -0.010 1.010 25 H 0.031 0.969 26 H 0.333 0.667 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.909 -15.963 3.648 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.307 5.307 11 C -0.028 4.028 12 H 0.117 0.883 13 C -0.229 4.229 14 C 0.316 3.684 15 O -0.420 6.420 16 N -0.355 5.355 17 C 0.006 3.994 18 C -0.173 4.173 19 C -0.156 4.156 20 C -0.167 4.167 21 C 0.032 3.968 22 H 0.115 0.885 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.049 0.951 26 H 0.151 0.849 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.141 -16.022 3.757 16.754 hybrid contribution -0.008 0.865 -0.869 1.226 sum 3.133 -15.157 2.888 15.745 Atomic orbital electron populations 1.69950 1.06072 1.26898 1.50719 1.24966 0.94873 0.99378 0.95200 0.86480 0.79789 0.82951 0.78090 1.20692 1.21225 1.19765 1.21159 0.93557 0.90181 1.50648 0.91942 1.19619 0.90513 0.87047 0.96048 1.60737 1.20596 1.00466 1.48944 1.22216 0.97208 0.90679 0.92702 0.88276 1.23208 0.98249 1.00389 1.01100 1.20734 0.83004 0.81398 0.83276 1.90675 1.61934 1.62860 1.26562 1.48619 1.53114 1.26087 1.07711 1.21664 0.93850 0.84319 0.99535 1.21962 1.00754 0.98157 0.96454 1.21524 1.00060 0.96919 0.97101 1.22083 0.98295 0.96524 0.99779 1.22052 0.97924 0.89687 0.87186 0.88451 0.92848 0.99181 0.95111 0.84912 0.88092 0.88033 0.91300 0.89863 0.90945 0.91726 0.91635 0.91801 0.90260 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.25 9.32 -34.44 -0.32 -14.57 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.19 4.81 5.31 -4.97 -0.03 4.78 16 10 N -0.68 -13.59 6.22 -106.93 -0.67 -14.26 16 11 C 0.08 1.35 3.05 -66.71 -0.20 1.15 16 12 H 0.10 1.56 7.50 -51.93 -0.39 1.17 16 13 C -0.19 -2.95 6.40 -26.72 -0.17 -3.12 16 14 C 0.53 8.89 8.02 -11.08 -0.09 8.80 16 15 O -0.54 -10.98 17.79 5.56 0.10 -10.88 16 16 N -0.62 -8.70 2.95 -163.81 -0.48 -9.18 16 17 C 0.13 1.44 6.94 -3.22 -0.02 1.41 16 18 C -0.14 -1.20 6.05 -26.52 -0.16 -1.36 16 19 C -0.12 -1.06 5.78 -26.57 -0.15 -1.22 16 20 C -0.13 -1.38 5.38 -26.34 -0.14 -1.52 16 21 C 0.14 1.83 3.35 -67.03 -0.22 1.60 16 22 H 0.10 1.40 7.99 -51.93 -0.42 0.99 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H -0.01 -0.25 8.14 -51.93 -0.42 -0.68 16 25 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 26 H 0.33 6.78 8.36 -39.29 -0.33 6.45 16 27 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.10 1.76 7.95 -51.93 -0.41 1.35 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 293.40 15.07 4.42 4.42 Total: -1.00 -30.94 293.40 -8.25 -39.19 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.73 Total: 2.29 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.61 Total: -2.53 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.41 Total: -48.89 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.10 Total: -10.88 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.94 -8.25 -39.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300972830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.617 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds