Wall clock time and date at job start Sun Mar 29 2020 21:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99758 * 2 1 4 4 H 1.48503 * 109.46847 * 269.99865 * 3 2 1 5 5 H 1.48497 * 109.47500 * 29.99721 * 3 2 1 6 6 H 1.48502 * 109.47349 * 150.00227 * 3 2 1 7 7 C 1.37871 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00418 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99946 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.46906 * 111.00071 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.62207 * 328.09909 * 11 10 9 13 13 C 1.54524 * 110.70238 * 91.38130 * 11 10 9 14 14 C 1.51440 * 104.21990 * 97.75203 * 13 11 10 15 15 O 1.21276 * 125.30174 * 203.28281 * 14 13 11 16 16 N 1.33741 * 109.40331 * 23.25359 * 14 13 11 17 17 C 1.47460 * 127.07567 * 160.55164 * 16 14 13 18 18 C 1.53577 * 107.02268 * 236.60407 * 17 16 14 19 19 C 1.52828 * 110.18332 * 308.58997 * 18 17 16 20 20 C 1.53483 * 110.44413 * 61.42483 * 19 18 17 21 21 C 1.47544 * 111.38392 * 344.13597 * 16 14 13 22 22 H 1.09001 * 111.06301 * 241.39333 * 21 16 14 23 23 H 0.97000 * 120.00273 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47315 * 60.00490 * 9 7 2 25 25 H 1.08996 * 109.47653 * 300.00019 * 9 7 2 26 26 H 1.00901 * 111.00328 * 303.95315 * 10 9 7 27 27 H 1.08995 * 110.47928 * 216.43606 * 13 11 10 28 28 H 1.08998 * 110.47923 * 339.06933 * 13 11 10 29 29 H 1.08997 * 109.94324 * 117.22752 * 17 16 14 30 30 H 1.08994 * 110.01491 * 356.01518 * 17 16 14 31 31 H 1.09000 * 109.35251 * 188.37594 * 18 17 16 32 32 H 1.08993 * 109.23657 * 68.73345 * 18 17 16 33 33 H 1.09004 * 109.30968 * 301.13092 * 19 18 17 34 34 H 1.08998 * 109.15246 * 181.62436 * 19 18 17 35 35 H 1.09008 * 109.77579 * 177.01290 * 20 19 18 36 36 H 1.08994 * 109.81622 * 56.24240 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6156 0.0027 11 6 1.5055 -4.9071 0.0032 12 1 0.5610 -4.8314 0.5420 13 6 1.2763 -5.4048 -1.4416 14 6 2.4096 -6.3797 -1.6834 15 8 2.8447 -6.6927 -2.7714 16 7 2.8564 -6.8414 -0.5105 17 6 3.6457 -8.0653 -0.2793 18 6 2.8625 -8.9222 0.7261 19 6 2.4877 -8.0879 1.9505 20 6 1.5856 -6.9146 1.5440 21 6 2.3899 -6.0032 0.6106 22 1 3.2305 -5.5601 1.1447 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8407 -3.5493 -0.7787 27 1 0.3142 -5.9106 -1.5225 28 1 1.3316 -4.5736 -2.1445 29 1 4.6209 -7.8065 0.1331 30 1 3.7707 -8.6109 -1.2146 31 1 3.4782 -9.7656 1.0386 32 1 1.9549 -9.2939 0.2508 33 1 3.3950 -7.7009 2.4145 34 1 1.9585 -8.7187 2.6647 35 1 1.2819 -6.3583 2.4310 36 1 0.7039 -7.2892 1.0241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300972830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:53 Heat of formation + Delta-G solvation = -62.940319 kcal Electronic energy + Delta-G solvation = -17334.253639 eV Core-core repulsion = 14623.614562 eV Total energy + Delta-G solvation = -2710.639077 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.92238 -38.52673 -37.35218 -35.14062 -33.86761 -32.62491 -30.14676 -28.58759 -26.70440 -24.57543 -23.57162 -22.12022 -21.90761 -20.17069 -18.63039 -17.59233 -16.94587 -16.66714 -16.58670 -15.89634 -15.66135 -15.30548 -14.82057 -14.59111 -14.45312 -14.08790 -13.77768 -13.61070 -13.35176 -13.06871 -12.71874 -12.61272 -12.52606 -12.13967 -12.03214 -11.83945 -11.64285 -11.51712 -11.21591 -10.90057 -10.64114 -9.65023 -9.20294 -8.21541 -6.31532 1.43043 1.43277 1.43648 1.55080 2.01619 2.41037 3.12676 3.29409 3.32032 3.62402 3.83900 3.97651 4.06544 4.16641 4.22033 4.33110 4.40501 4.63730 4.65388 4.73985 4.82159 4.95846 5.01565 5.06323 5.14849 5.19746 5.23586 5.30813 5.47680 5.61204 5.63361 6.01824 6.11485 6.37876 6.63428 6.86926 7.09145 7.39015 8.89604 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037714 B = 0.005485 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.244995 B = 5103.344358 C = 5386.952914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.210 3.790 10 N -0.675 5.675 11 C 0.082 3.918 12 H 0.104 0.896 13 C -0.182 4.182 14 C 0.521 3.479 15 O -0.584 6.584 16 N -0.613 5.613 17 C 0.119 3.881 18 C -0.127 4.127 19 C -0.115 4.115 20 C -0.124 4.124 21 C 0.142 3.858 22 H 0.093 0.907 23 H 0.265 0.735 24 H -0.033 1.033 25 H 0.012 0.988 26 H 0.331 0.669 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -16.901 4.963 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.082 3.918 10 N -0.304 5.304 11 C -0.029 4.029 12 H 0.122 0.878 13 C -0.224 4.224 14 C 0.310 3.690 15 O -0.465 6.465 16 N -0.346 5.346 17 C -0.002 4.002 18 C -0.165 4.165 19 C -0.153 4.153 20 C -0.163 4.163 21 C 0.038 3.962 22 H 0.111 0.889 23 H 0.074 0.926 24 H -0.015 1.015 25 H 0.030 0.970 26 H 0.148 0.852 27 H 0.141 0.859 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.854 -16.996 5.113 18.162 hybrid contribution -0.224 1.102 -1.262 1.691 sum 3.630 -15.893 3.851 16.751 Atomic orbital electron populations 1.70061 1.07578 1.27958 1.51458 1.25842 0.95734 1.03052 0.94646 0.85408 0.78610 0.78451 0.78287 1.20114 1.20618 1.19006 1.21538 0.93740 0.91654 1.50658 0.92101 1.19250 0.90475 0.88102 0.93928 1.60638 1.19864 1.01044 1.48829 1.22309 0.97814 0.89508 0.93309 0.87806 1.23140 0.99304 0.99786 1.00168 1.20832 0.83207 0.81487 0.83456 1.90649 1.63323 1.64431 1.28087 1.48736 1.52424 1.26563 1.06842 1.21971 0.94568 0.83381 1.00237 1.21930 1.00684 0.98322 0.95550 1.21529 1.00019 0.96304 0.97429 1.22079 0.98332 0.96701 0.99151 1.21977 0.97694 0.89328 0.87164 0.88907 0.92613 1.01521 0.96962 0.85182 0.85885 0.90108 0.90062 0.90527 0.88306 0.92023 0.91214 0.89751 0.89601 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.29 21.44 0.28 -54.59 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -29.98 9.32 25.60 0.24 -29.74 16 8 H 0.06 3.34 7.81 -2.91 -0.02 3.31 16 9 C 0.21 10.66 5.31 85.56 0.45 11.11 16 10 N -0.67 -27.37 6.22 -492.22 -3.06 -30.44 16 11 C 0.08 2.61 3.05 45.56 0.14 2.75 16 12 H 0.10 3.22 7.50 -2.38 -0.02 3.20 16 13 C -0.18 -5.76 6.40 30.60 0.20 -5.57 16 14 C 0.52 17.56 8.02 88.05 0.71 18.27 16 15 O -0.58 -23.99 17.79 -3.02 -0.05 -24.04 16 16 N -0.61 -16.44 2.95 -791.15 -2.33 -18.77 16 17 C 0.12 2.43 6.94 86.39 0.60 3.03 16 18 C -0.13 -1.84 6.05 30.73 0.19 -1.66 16 19 C -0.12 -1.66 5.78 30.70 0.18 -1.48 16 20 C -0.12 -2.34 5.38 30.85 0.17 -2.18 16 21 C 0.14 3.63 3.35 45.01 0.15 3.78 16 22 H 0.09 2.53 7.99 -2.39 -0.02 2.51 16 23 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 24 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 25 H 0.01 0.66 8.08 -2.39 -0.02 0.65 16 26 H 0.33 13.72 8.36 -89.69 -0.75 12.97 16 27 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 28 H 0.08 2.91 7.95 -2.39 -0.02 2.89 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.70 7.96 -2.39 -0.02 1.68 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -66.89 293.40 0.65 -66.25 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.31 Total: 16.63 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 3.47 Total: -0.90 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -5.11 Total: -103.80 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -66.89 0.65 -66.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300972830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.307 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds