Wall clock time and date at job start Sun Mar 29 2020 21:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00271 * 2 1 4 4 H 1.48499 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46926 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.47075 * 59.99807 * 3 2 1 7 7 C 1.37882 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99468 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00189 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99973 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.76279 * 31.81268 * 11 10 9 13 13 C 1.54512 * 110.70310 * 268.61532 * 11 10 9 14 14 C 1.51440 * 104.22551 * 262.25702 * 13 11 10 15 15 O 1.21280 * 125.30439 * 156.73688 * 14 13 11 16 16 N 1.33749 * 109.40022 * 336.74103 * 14 13 11 17 17 C 1.47461 * 127.07130 * 199.47092 * 16 14 13 18 18 C 1.53570 * 107.02252 * 123.36566 * 17 16 14 19 19 C 1.52828 * 110.17639 * 51.41777 * 18 17 16 20 20 C 1.53739 * 111.11388 * 298.89897 * 19 18 17 21 21 C 1.47544 * 111.38422 * 15.86809 * 16 14 13 22 22 H 1.09002 * 110.41268 * 118.23462 * 21 16 14 23 23 H 0.97002 * 119.99935 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.47373 * 60.00274 * 9 7 2 25 25 H 1.09000 * 109.47188 * 299.99705 * 9 7 2 26 26 H 1.00898 * 110.99978 * 303.95564 * 10 9 7 27 27 H 1.08996 * 110.48735 * 20.94249 * 13 11 10 28 28 H 1.08996 * 110.48364 * 143.57221 * 13 11 10 29 29 H 1.08998 * 109.94040 * 242.74433 * 17 16 14 30 30 H 1.08997 * 109.94182 * 3.90385 * 17 16 14 31 31 H 1.09001 * 109.35464 * 171.63152 * 18 17 16 32 32 H 1.08994 * 109.35507 * 291.34554 * 18 17 16 33 33 H 1.09001 * 109.30745 * 58.87140 * 19 18 17 34 34 H 1.08994 * 109.31163 * 178.46842 * 19 18 17 35 35 H 1.09008 * 108.58970 * 303.40302 * 20 19 18 36 36 H 1.09000 * 111.09173 * 182.54754 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5051 -4.9071 0.0001 12 1 0.5594 -4.8340 -0.5369 13 6 1.2759 -5.4035 1.4452 14 6 2.4092 -6.3782 1.6881 15 8 2.8440 -6.6904 2.7763 16 7 2.8561 -6.8411 0.5155 17 6 3.6449 -8.0655 0.2856 18 6 2.8612 -8.9233 -0.7186 19 6 2.4865 -8.0902 -1.9439 20 6 1.5893 -6.9043 -1.5540 21 6 2.3896 -6.0039 -0.6063 22 1 3.2378 -5.5618 -1.1291 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8404 -3.5487 -0.7819 27 1 1.3311 -4.5718 2.1475 28 1 0.3139 -5.9093 1.5267 29 1 4.6201 -7.8074 -0.1274 30 1 3.7700 -8.6085 1.2223 31 1 3.4765 -9.7674 -1.0302 32 1 1.9524 -9.2941 -0.2449 33 1 3.3939 -7.7043 -2.4085 34 1 1.9553 -8.7189 -2.6584 35 1 0.7082 -7.2892 -1.0405 36 1 1.2857 -6.3363 -2.4334 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300972831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:55 Heat of formation + Delta-G solvation = -40.715633 kcal Electronic energy + Delta-G solvation = -17325.053364 eV Core-core repulsion = 14615.378022 eV Total energy + Delta-G solvation = -2709.675342 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63976 -37.21057 -35.88192 -33.47102 -32.43778 -31.28921 -28.95456 -27.00526 -25.25808 -23.49684 -21.80734 -20.98953 -20.59021 -19.02657 -16.64834 -16.19153 -15.66841 -15.52436 -14.91809 -14.56601 -14.48879 -13.92803 -13.59614 -13.24358 -13.05020 -12.88374 -12.55693 -12.06163 -11.73670 -11.53331 -11.32270 -11.17998 -11.05467 -10.82854 -10.75567 -10.68096 -10.48530 -9.91739 -9.49308 -9.20485 -8.52823 -8.50973 -7.45179 -6.07420 -4.09376 2.88770 3.15887 3.29530 3.37268 3.42278 4.38209 4.51363 4.52158 4.66874 4.81149 4.94515 4.98877 5.17200 5.21296 5.29070 5.32677 5.50441 5.61031 5.68622 5.71869 5.84220 5.84855 5.89751 5.92659 6.07676 6.23315 6.39159 6.71922 7.15281 7.31660 7.37744 7.72978 8.05874 8.26224 8.47229 8.50373 8.99594 9.56000 11.03675 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037643 B = 0.005486 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.646655 B = 5102.558092 C = 5386.681096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.680 5.680 11 C 0.081 3.919 12 H 0.067 0.933 13 C -0.146 4.146 14 C 0.536 3.464 15 O -0.542 6.542 16 N -0.621 5.621 17 C 0.128 3.872 18 C -0.134 4.134 19 C -0.118 4.118 20 C -0.130 4.130 21 C 0.131 3.869 22 H 0.086 0.914 23 H 0.261 0.739 24 H -0.010 1.010 25 H 0.030 0.970 26 H 0.333 0.667 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -16.118 -5.190 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.312 5.312 11 C -0.031 4.031 12 H 0.084 0.916 13 C -0.187 4.187 14 C 0.325 3.675 15 O -0.419 6.419 16 N -0.356 5.356 17 C 0.006 3.994 18 C -0.173 4.173 19 C -0.156 4.156 20 C -0.169 4.169 21 C 0.027 3.973 22 H 0.104 0.896 23 H 0.071 0.929 24 H 0.008 0.992 25 H 0.048 0.952 26 H 0.151 0.849 27 H 0.129 0.871 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.186 -16.197 -3.905 16.963 hybrid contribution 0.015 0.926 -0.987 1.353 sum 3.201 -15.271 -4.892 16.352 Atomic orbital electron populations 1.69966 1.06073 1.26771 1.50843 1.24977 0.94874 0.99393 0.95234 0.86426 0.80081 0.83293 0.77523 1.19655 1.21095 1.20956 1.21198 0.93586 0.90149 1.50454 0.91881 1.19630 0.90486 0.87107 0.96003 1.60762 1.20969 1.00369 1.49128 1.22096 0.96322 0.90297 0.94345 0.91570 1.22484 0.96953 0.99677 0.99604 1.20765 0.82894 0.80769 0.83033 1.90667 1.61909 1.62841 1.26478 1.48538 1.53515 1.26080 1.07510 1.21658 0.93770 0.84359 0.99593 1.21943 1.00832 0.98143 0.96347 1.21547 0.99968 0.96813 0.97287 1.22166 0.98587 0.96532 0.99596 1.22056 0.97152 0.90619 0.87518 0.89643 0.92913 0.99241 0.95159 0.84870 0.87119 0.88572 0.91421 0.89719 0.90851 0.91633 0.91849 0.91740 0.91324 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.25 9.32 -34.44 -0.32 -14.57 16 8 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 9 C 0.19 4.84 5.31 -4.98 -0.03 4.81 16 10 N -0.68 -13.72 6.32 -106.94 -0.68 -14.39 16 11 C 0.08 1.31 3.05 -66.71 -0.20 1.11 16 12 H 0.07 1.06 7.50 -51.93 -0.39 0.67 16 13 C -0.15 -2.43 6.65 -26.73 -0.18 -2.61 16 14 C 0.54 9.43 8.02 -11.08 -0.09 9.34 16 15 O -0.54 -11.35 17.79 5.56 0.10 -11.25 16 16 N -0.62 -8.86 2.96 -163.80 -0.49 -9.35 16 17 C 0.13 1.44 6.94 -3.22 -0.02 1.42 16 18 C -0.13 -1.18 6.07 -26.52 -0.16 -1.34 16 19 C -0.12 -1.03 5.76 -26.44 -0.15 -1.18 16 20 C -0.13 -1.35 5.44 -26.21 -0.14 -1.49 16 21 C 0.13 1.73 3.27 -67.02 -0.22 1.51 16 22 H 0.09 1.12 7.46 -51.93 -0.39 0.74 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H -0.01 -0.26 8.08 -51.93 -0.42 -0.68 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.33 6.31 7.99 -39.29 -0.31 6.00 16 27 H 0.11 2.10 8.05 -51.93 -0.42 1.69 16 28 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.00 7.96 -51.93 -0.41 0.58 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 292.94 15.07 4.41 4.41 Total: -1.00 -31.70 292.94 -8.24 -39.93 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.69 Total: 1.25 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.61 Total: -1.51 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.42 Total: -49.27 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.10 Total: -11.25 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.70 -8.24 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300972831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.783 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds