Wall clock time and date at job start Sun Mar 29 2020 21:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00271 * 2 1 4 4 H 1.48499 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46926 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.47075 * 59.99807 * 3 2 1 7 7 C 1.37882 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99468 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00189 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99973 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.76279 * 31.81268 * 11 10 9 13 13 C 1.54512 * 110.70310 * 268.61532 * 11 10 9 14 14 C 1.51440 * 104.22551 * 262.25702 * 13 11 10 15 15 O 1.21280 * 125.30439 * 156.73688 * 14 13 11 16 16 N 1.33749 * 109.40022 * 336.74103 * 14 13 11 17 17 C 1.47461 * 127.07130 * 199.47092 * 16 14 13 18 18 C 1.53570 * 107.02252 * 123.36566 * 17 16 14 19 19 C 1.52828 * 110.17639 * 51.41777 * 18 17 16 20 20 C 1.53739 * 111.11388 * 298.89897 * 19 18 17 21 21 C 1.47544 * 111.38422 * 15.86809 * 16 14 13 22 22 H 1.09002 * 110.41268 * 118.23462 * 21 16 14 23 23 H 0.97002 * 119.99935 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.47373 * 60.00274 * 9 7 2 25 25 H 1.09000 * 109.47188 * 299.99705 * 9 7 2 26 26 H 1.00898 * 110.99978 * 303.95564 * 10 9 7 27 27 H 1.08996 * 110.48735 * 20.94249 * 13 11 10 28 28 H 1.08996 * 110.48364 * 143.57221 * 13 11 10 29 29 H 1.08998 * 109.94040 * 242.74433 * 17 16 14 30 30 H 1.08997 * 109.94182 * 3.90385 * 17 16 14 31 31 H 1.09001 * 109.35464 * 171.63152 * 18 17 16 32 32 H 1.08994 * 109.35507 * 291.34554 * 18 17 16 33 33 H 1.09001 * 109.30745 * 58.87140 * 19 18 17 34 34 H 1.08994 * 109.31163 * 178.46842 * 19 18 17 35 35 H 1.09008 * 108.58970 * 303.40302 * 20 19 18 36 36 H 1.09000 * 111.09173 * 182.54754 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5051 -4.9071 0.0001 12 1 0.5594 -4.8340 -0.5369 13 6 1.2759 -5.4035 1.4452 14 6 2.4092 -6.3782 1.6881 15 8 2.8440 -6.6904 2.7763 16 7 2.8561 -6.8411 0.5155 17 6 3.6449 -8.0655 0.2856 18 6 2.8612 -8.9233 -0.7186 19 6 2.4865 -8.0902 -1.9439 20 6 1.5893 -6.9043 -1.5540 21 6 2.3896 -6.0039 -0.6063 22 1 3.2378 -5.5618 -1.1291 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8404 -3.5487 -0.7819 27 1 1.3311 -4.5718 2.1475 28 1 0.3139 -5.9093 1.5267 29 1 4.6201 -7.8074 -0.1274 30 1 3.7700 -8.6085 1.2223 31 1 3.4765 -9.7674 -1.0302 32 1 1.9524 -9.2941 -0.2449 33 1 3.3939 -7.7043 -2.4085 34 1 1.9553 -8.7189 -2.6584 35 1 0.7082 -7.2892 -1.0405 36 1 1.2857 -6.3363 -2.4334 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300972831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:55 Heat of formation + Delta-G solvation = -62.772177 kcal Electronic energy + Delta-G solvation = -17326.009808 eV Core-core repulsion = 14615.378022 eV Total energy + Delta-G solvation = -2710.631785 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.86674 -38.53454 -37.25638 -35.13866 -33.90801 -32.62611 -30.16909 -28.72661 -26.64838 -24.64572 -23.49947 -22.06339 -21.88362 -20.15683 -18.60966 -17.48986 -17.13449 -16.73170 -16.63633 -15.82627 -15.67898 -15.11165 -14.87340 -14.57772 -14.52024 -14.08413 -13.81794 -13.65365 -13.33613 -12.94878 -12.78213 -12.60775 -12.48035 -12.17162 -12.04916 -11.81571 -11.57170 -11.50993 -11.23064 -10.89041 -10.63668 -9.66002 -9.15668 -8.21830 -6.31723 1.41501 1.43288 1.51550 1.56039 2.03328 2.40821 3.12457 3.31229 3.40256 3.45081 3.91786 3.97382 4.03352 4.14635 4.19062 4.35796 4.47053 4.60962 4.66528 4.72401 4.88138 4.92710 4.99165 5.09477 5.13668 5.16348 5.21551 5.28749 5.44612 5.63294 5.63582 6.03766 6.11930 6.42292 6.70930 6.89457 7.14119 7.39056 8.89658 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037643 B = 0.005486 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.646655 B = 5102.558092 C = 5386.681096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.211 3.789 10 N -0.685 5.685 11 C 0.080 3.920 12 H 0.074 0.926 13 C -0.146 4.146 14 C 0.528 3.472 15 O -0.585 6.585 16 N -0.614 5.614 17 C 0.119 3.881 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.125 4.125 21 C 0.136 3.864 22 H 0.092 0.908 23 H 0.265 0.735 24 H -0.026 1.026 25 H 0.001 0.999 26 H 0.341 0.659 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 -17.041 -6.925 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.084 3.916 10 N -0.317 5.317 11 C -0.031 4.031 12 H 0.091 0.909 13 C -0.187 4.187 14 C 0.318 3.682 15 O -0.466 6.466 16 N -0.347 5.347 17 C -0.001 4.001 18 C -0.164 4.164 19 C -0.153 4.153 20 C -0.164 4.164 21 C 0.032 3.968 22 H 0.110 0.890 23 H 0.074 0.926 24 H -0.009 1.009 25 H 0.019 0.981 26 H 0.161 0.839 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.055 -17.152 -5.689 18.520 hybrid contribution -0.250 1.160 -0.452 1.270 sum 3.805 -15.992 -6.141 17.548 Atomic orbital electron populations 1.70076 1.07614 1.27882 1.51587 1.25863 0.95735 1.03104 0.94678 0.85347 0.78905 0.78707 0.77703 1.18945 1.20104 1.20739 1.21567 0.93745 0.91593 1.50451 0.92040 1.19229 0.90451 0.88204 0.93740 1.60573 1.20499 1.00884 1.49763 1.22142 0.97095 0.89388 0.94510 0.90855 1.22477 0.98248 0.98885 0.99090 1.20860 0.83129 0.80909 0.83351 1.90635 1.63366 1.64494 1.28139 1.48656 1.52744 1.26639 1.06652 1.21972 0.94556 0.83357 1.00264 1.21914 1.00684 0.98334 0.95511 1.21554 1.00074 0.96163 0.97476 1.22167 0.98476 0.96730 0.99021 1.22075 0.97224 0.90070 0.87392 0.88986 0.92632 1.00862 0.98069 0.83943 0.90162 0.86194 0.90023 0.90598 0.88182 0.92061 0.91128 0.89697 0.91325 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.54 -29.91 9.32 25.60 0.24 -29.67 16 8 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 9 C 0.21 10.80 5.31 85.56 0.45 11.25 16 10 N -0.68 -27.83 6.32 -492.24 -3.11 -30.94 16 11 C 0.08 2.55 3.05 45.56 0.14 2.69 16 12 H 0.07 2.29 7.50 -2.39 -0.02 2.27 16 13 C -0.15 -4.94 6.65 30.60 0.20 -4.74 16 14 C 0.53 18.69 8.02 88.05 0.71 19.40 16 15 O -0.59 -25.16 17.79 -3.03 -0.05 -25.21 16 16 N -0.61 -16.74 2.96 -791.11 -2.34 -19.09 16 17 C 0.12 2.43 6.94 86.39 0.60 3.03 16 18 C -0.13 -1.78 6.07 30.73 0.19 -1.60 16 19 C -0.12 -1.53 5.76 30.79 0.18 -1.36 16 20 C -0.13 -2.22 5.44 30.93 0.17 -2.06 16 21 C 0.14 3.35 3.27 45.01 0.15 3.50 16 22 H 0.09 2.21 7.46 -2.39 -0.02 2.19 16 23 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 24 H -0.03 -1.40 8.08 -2.39 -0.02 -1.42 16 25 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.34 12.79 7.99 -89.70 -0.72 12.07 16 27 H 0.08 3.22 8.05 -2.39 -0.02 3.20 16 28 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.71 7.96 -2.39 -0.02 1.69 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -69.34 292.94 0.63 -68.71 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.34 Total: 14.25 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 3.48 Total: 1.17 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -5.17 Total: -104.91 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -69.34 0.63 -68.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300972831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.942 kcal (2) G-P(sol) polarization free energy of solvation -69.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds