Wall clock time and date at job start Sun Mar 29 2020 22:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32993 * 120.00187 * 2 1 4 4 C 1.47107 * 119.99663 * 0.02562 * 3 2 1 5 5 O 1.21609 * 120.00232 * 354.46840 * 4 3 2 6 6 N 1.34776 * 119.99539 * 174.46887 * 4 3 2 7 7 C 1.47085 * 120.87524 * 184.73416 * 6 4 3 8 8 C 1.53698 * 108.27835 * 128.75520 * 7 6 4 9 9 N 1.46896 * 109.25704 * 54.07563 * 8 7 6 10 10 C 1.46895 * 111.00314 * 172.61127 * 9 8 7 11 11 C 1.50703 * 109.47163 * 294.30608 * 10 9 8 12 12 H 1.08000 * 119.99492 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00240 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00063 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99961 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46969 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47439 * 120.00166 * 15 13 11 18 18 H 1.48508 * 109.47244 * 240.00304 * 15 13 11 19 19 C 1.46902 * 111.27263 * 296.75937 * 9 8 7 20 20 C 1.47070 * 120.88547 * 5.00433 * 6 4 3 21 21 H 1.08999 * 109.46999 * 59.99934 * 1 2 3 22 22 H 1.08997 * 109.46868 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46615 * 299.99845 * 1 2 3 24 24 H 1.07999 * 120.00115 * 180.02562 * 2 1 3 25 25 H 1.08000 * 120.00294 * 179.72404 * 3 2 1 26 26 H 1.09003 * 109.62188 * 248.51687 * 7 6 4 27 27 H 1.08991 * 109.63027 * 9.09743 * 7 6 4 28 28 H 1.08998 * 109.64591 * 294.07664 * 8 7 6 29 29 H 1.08995 * 109.42341 * 173.94780 * 8 7 6 30 30 H 1.09001 * 109.47200 * 54.29877 * 10 9 8 31 31 H 1.08999 * 109.47889 * 174.29965 * 10 9 8 32 32 H 0.97006 * 119.99826 * 179.97438 * 14 13 11 33 33 H 1.09003 * 109.49076 * 303.14903 * 19 9 8 34 34 H 1.09002 * 109.51555 * 183.07680 * 19 9 8 35 35 H 1.08999 * 109.62889 * 350.90316 * 20 6 4 36 36 H 1.09003 * 109.62678 * 111.47871 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4365 2.4257 0.0006 5 8 0.2246 2.4282 -0.1005 6 7 2.1057 3.5901 0.1131 7 6 1.3849 4.8678 0.2197 8 6 1.9319 5.6297 1.4374 9 7 3.3912 5.7484 1.3191 10 6 3.9355 6.6190 2.3696 11 6 3.4361 8.0261 2.1647 12 1 2.7803 8.2510 1.3366 13 6 3.8163 9.0261 3.0343 14 7 4.6145 8.7520 4.0430 15 14 3.1978 10.7703 2.7799 16 1 2.3209 10.8147 1.5823 17 1 2.4279 11.2016 3.9741 18 1 4.3536 11.6813 2.5805 19 6 4.0369 4.4291 1.3419 20 6 3.5761 3.6175 0.1265 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 2.0470 -0.9353 -0.0004 25 1 3.2520 1.1518 0.0045 26 1 1.5442 5.4546 -0.6850 27 1 0.3201 4.6774 0.3533 28 1 1.6839 5.0881 2.3502 29 1 1.4876 6.6243 1.4721 30 1 3.6116 6.2571 3.3454 31 1 5.0244 6.6094 2.3217 32 1 4.8823 9.4557 4.6546 33 1 3.7595 3.9042 2.2561 34 1 5.1193 4.5528 1.3076 35 1 3.9606 2.6001 0.1985 36 1 3.9420 4.0864 -0.7869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308677947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:31 Heat of formation + Delta-G solvation = -5.606390 kcal Electronic energy + Delta-G solvation = -17090.274380 eV Core-core repulsion = 14382.121489 eV Total energy + Delta-G solvation = -2708.152891 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.98722 -37.65651 -34.50551 -34.11947 -32.40477 -30.81468 -28.69023 -27.31316 -25.44373 -23.52009 -22.41001 -21.47336 -19.82528 -18.12438 -17.32453 -16.35951 -15.40823 -15.08429 -14.90359 -14.56722 -14.34227 -13.82872 -13.54573 -13.35859 -13.26096 -12.48745 -12.34353 -12.18730 -12.00349 -11.60439 -11.26414 -11.06845 -10.84568 -10.73130 -10.57871 -10.50916 -9.88450 -9.51952 -9.41429 -9.22362 -8.49428 -8.34833 -7.32807 -6.06894 -4.08624 1.39168 3.22425 3.29178 3.36828 3.39527 3.41638 4.38890 4.61930 4.71162 4.91948 5.14840 5.28615 5.31491 5.42110 5.49062 5.56702 5.66051 5.78490 5.83749 5.93916 6.02146 6.03166 6.21697 6.31896 6.43997 6.44717 6.54381 6.78829 7.21476 7.27360 7.63464 7.74917 8.00632 8.11537 8.35566 8.47325 8.99040 9.56156 11.04017 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.053092 B = 0.004930 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.264660 B = 5678.465385 C = 5959.289266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.069 4.069 3 C -0.227 4.227 4 C 0.541 3.459 5 O -0.550 6.550 6 N -0.605 5.605 7 C 0.116 3.884 8 C 0.052 3.948 9 N -0.536 5.536 10 C 0.193 3.807 11 C -0.509 4.509 12 H 0.065 0.935 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.039 3.961 20 C 0.111 3.889 21 H 0.084 0.916 22 H 0.048 0.952 23 H 0.078 0.922 24 H 0.123 0.877 25 H 0.129 0.871 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.024 0.976 29 H 0.096 0.904 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.027 0.973 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -14.625 -7.312 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.089 4.089 3 C -0.247 4.247 4 C 0.332 3.668 5 O -0.431 6.431 6 N -0.338 5.338 7 C -0.007 4.007 8 C -0.077 4.077 9 N -0.261 5.261 10 C 0.068 3.932 11 C -0.547 4.547 12 H 0.083 0.917 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.090 4.090 20 C -0.012 4.012 21 H 0.102 0.898 22 H 0.067 0.933 23 H 0.097 0.903 24 H 0.140 0.860 25 H 0.146 0.854 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.042 0.958 29 H 0.115 0.885 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.408 -14.288 -7.656 16.564 hybrid contribution -0.052 0.665 0.876 1.101 sum -3.460 -13.623 -6.780 15.605 Atomic orbital electron populations 1.21050 0.91947 1.00701 1.04343 1.23734 0.97382 0.97059 0.90690 1.22768 1.00468 0.92713 1.08789 1.18608 0.87157 0.84264 0.76759 1.90738 1.14022 1.87348 1.50986 1.48138 1.07344 1.06612 1.71682 1.21927 0.96669 0.82766 0.99298 1.22423 0.90025 1.00653 0.94644 1.62078 1.03182 1.09500 1.51333 1.19735 0.95515 0.91202 0.86735 1.21186 1.29415 0.92516 1.11623 0.91725 1.24990 0.95223 0.99261 0.95096 1.69967 1.35035 1.33206 1.15569 0.86439 0.78634 0.84280 0.78068 1.19595 1.21102 1.20993 1.22407 0.99771 0.91265 0.95601 1.21974 0.79141 1.00309 0.99756 0.89794 0.93250 0.90338 0.85964 0.85370 0.91031 0.89485 0.95776 0.88544 0.99118 0.95027 0.92936 0.95520 0.90074 0.89956 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.45 36.01 0.30 -1.06 16 2 C -0.07 -0.69 10.35 -36.13 -0.37 -1.07 16 3 C -0.23 -2.65 9.35 -37.80 -0.35 -3.00 16 4 C 0.54 8.31 7.60 -12.66 -0.10 8.21 16 5 O -0.55 -9.72 12.58 5.27 0.07 -9.65 16 6 N -0.61 -9.44 3.00 -173.58 -0.52 -9.96 16 7 C 0.12 1.94 6.61 -3.36 -0.02 1.92 16 8 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 9 N -0.54 -11.20 4.62 -235.47 -1.09 -12.29 16 10 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 11 C -0.51 -14.00 8.41 -34.44 -0.29 -14.29 16 12 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 15 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 20 C 0.11 1.53 6.51 -3.61 -0.02 1.50 16 21 H 0.08 1.05 7.07 -51.93 -0.37 0.69 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.08 1.00 7.38 -51.93 -0.38 0.62 16 24 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 25 H 0.13 1.20 5.91 -52.49 -0.31 0.89 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.09 1.46 7.09 -51.93 -0.37 1.09 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 1.31 7.99 -51.93 -0.41 0.89 16 35 H 0.08 0.87 5.37 -51.93 -0.28 0.59 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -31.02 290.69 -7.81 -38.84 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.35 Total: -2.23 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.02 Total: 0.21 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.87 Total: -47.90 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.02 -7.81 -38.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308677947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.229 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds