Wall clock time and date at job start Sun Mar 29 2020 22:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32993 * 120.00187 * 2 1 4 4 C 1.47107 * 119.99663 * 0.02562 * 3 2 1 5 5 O 1.21609 * 120.00232 * 354.46840 * 4 3 2 6 6 N 1.34776 * 119.99539 * 174.46887 * 4 3 2 7 7 C 1.47085 * 120.87524 * 184.73416 * 6 4 3 8 8 C 1.53698 * 108.27835 * 128.75520 * 7 6 4 9 9 N 1.46896 * 109.25704 * 54.07563 * 8 7 6 10 10 C 1.46895 * 111.00314 * 172.61127 * 9 8 7 11 11 C 1.50703 * 109.47163 * 294.30608 * 10 9 8 12 12 H 1.08000 * 119.99492 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00240 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00063 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99961 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46969 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47439 * 120.00166 * 15 13 11 18 18 H 1.48508 * 109.47244 * 240.00304 * 15 13 11 19 19 C 1.46902 * 111.27263 * 296.75937 * 9 8 7 20 20 C 1.47070 * 120.88547 * 5.00433 * 6 4 3 21 21 H 1.08999 * 109.46999 * 59.99934 * 1 2 3 22 22 H 1.08997 * 109.46868 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46615 * 299.99845 * 1 2 3 24 24 H 1.07999 * 120.00115 * 180.02562 * 2 1 3 25 25 H 1.08000 * 120.00294 * 179.72404 * 3 2 1 26 26 H 1.09003 * 109.62188 * 248.51687 * 7 6 4 27 27 H 1.08991 * 109.63027 * 9.09743 * 7 6 4 28 28 H 1.08998 * 109.64591 * 294.07664 * 8 7 6 29 29 H 1.08995 * 109.42341 * 173.94780 * 8 7 6 30 30 H 1.09001 * 109.47200 * 54.29877 * 10 9 8 31 31 H 1.08999 * 109.47889 * 174.29965 * 10 9 8 32 32 H 0.97006 * 119.99826 * 179.97438 * 14 13 11 33 33 H 1.09003 * 109.49076 * 303.14903 * 19 9 8 34 34 H 1.09002 * 109.51555 * 183.07680 * 19 9 8 35 35 H 1.08999 * 109.62889 * 350.90316 * 20 6 4 36 36 H 1.09003 * 109.62678 * 111.47871 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4365 2.4257 0.0006 5 8 0.2246 2.4282 -0.1005 6 7 2.1057 3.5901 0.1131 7 6 1.3849 4.8678 0.2197 8 6 1.9319 5.6297 1.4374 9 7 3.3912 5.7484 1.3191 10 6 3.9355 6.6190 2.3696 11 6 3.4361 8.0261 2.1647 12 1 2.7803 8.2510 1.3366 13 6 3.8163 9.0261 3.0343 14 7 4.6145 8.7520 4.0430 15 14 3.1978 10.7703 2.7799 16 1 2.3209 10.8147 1.5823 17 1 2.4279 11.2016 3.9741 18 1 4.3536 11.6813 2.5805 19 6 4.0369 4.4291 1.3419 20 6 3.5761 3.6175 0.1265 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 2.0470 -0.9353 -0.0004 25 1 3.2520 1.1518 0.0045 26 1 1.5442 5.4546 -0.6850 27 1 0.3201 4.6774 0.3533 28 1 1.6839 5.0881 2.3502 29 1 1.4876 6.6243 1.4721 30 1 3.6116 6.2571 3.3454 31 1 5.0244 6.6094 2.3217 32 1 4.8823 9.4557 4.6546 33 1 3.7595 3.9042 2.2561 34 1 5.1193 4.5528 1.3076 35 1 3.9606 2.6001 0.1985 36 1 3.9420 4.0864 -0.7869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308677947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:30 Heat of formation + Delta-G solvation = -26.672513 kcal Electronic energy + Delta-G solvation = -17091.187876 eV Core-core repulsion = 14382.121489 eV Total energy + Delta-G solvation = -2709.066387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21341 -39.09535 -36.03796 -35.09558 -34.39311 -32.17700 -30.26648 -28.53342 -27.10194 -24.88980 -24.00071 -22.93624 -21.15921 -19.31990 -18.51703 -18.36249 -16.77725 -16.56896 -16.28425 -15.97952 -15.76552 -15.36229 -15.09980 -14.56568 -14.43448 -14.10153 -13.72230 -13.47813 -13.11867 -13.03778 -12.75375 -12.66509 -12.57356 -12.34078 -12.21272 -12.04697 -11.71668 -11.29447 -10.64326 -10.50501 -10.41496 -9.65773 -9.05840 -8.21976 -6.31846 0.48668 1.41182 1.42024 1.55373 2.04540 2.31053 2.40091 3.10542 3.22391 3.62767 3.94271 4.02618 4.09770 4.23387 4.31161 4.40843 4.44052 4.63097 4.74528 4.79097 4.84728 4.85987 4.91798 5.01847 5.11971 5.16740 5.24777 5.41632 5.54740 5.62195 5.65967 6.02141 6.21165 6.49426 6.58923 6.83902 7.18849 7.38166 8.89414 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.053092 B = 0.004930 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.264660 B = 5678.465385 C = 5959.289266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.048 4.048 3 C -0.245 4.245 4 C 0.532 3.468 5 O -0.582 6.582 6 N -0.612 5.612 7 C 0.127 3.873 8 C 0.058 3.942 9 N -0.540 5.540 10 C 0.208 3.792 11 C -0.524 4.524 12 H 0.064 0.936 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.277 1.277 19 C 0.035 3.965 20 C 0.120 3.880 21 H 0.064 0.936 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.166 0.834 25 H 0.158 0.842 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.009 0.991 29 H 0.078 0.922 30 H -0.042 1.042 31 H 0.012 0.988 32 H 0.264 0.736 33 H 0.019 0.981 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -16.006 -8.610 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.068 4.068 3 C -0.265 4.265 4 C 0.326 3.674 5 O -0.465 6.465 6 N -0.345 5.345 7 C 0.004 3.996 8 C -0.071 4.071 9 N -0.265 5.265 10 C 0.082 3.918 11 C -0.562 4.562 12 H 0.082 0.918 13 C -0.195 4.195 14 N -0.575 5.575 15 Si 0.793 3.207 16 H -0.187 1.187 17 H -0.206 1.206 18 H -0.203 1.203 19 C -0.094 4.094 20 C -0.002 4.002 21 H 0.083 0.917 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.183 0.817 25 H 0.175 0.825 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.027 0.973 29 H 0.096 0.904 30 H -0.024 1.024 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.072 -15.694 -8.973 18.338 hybrid contribution -0.194 0.995 1.297 1.646 sum -3.266 -14.700 -7.677 16.902 Atomic orbital electron populations 1.21032 0.93199 1.01831 1.02292 1.24128 0.96705 0.98303 0.87648 1.22846 1.01685 0.90985 1.10994 1.19348 0.87079 0.85257 0.75759 1.90728 1.15581 1.87830 1.52393 1.48245 1.08100 1.06211 1.71907 1.21660 0.96554 0.83539 0.97842 1.22331 0.89270 0.99961 0.95542 1.62002 1.03951 1.11469 1.49034 1.19388 0.94232 0.91681 0.86539 1.21496 1.29396 0.93668 1.11647 0.91753 1.25890 0.95269 1.03685 0.94676 1.70085 1.36212 1.34708 1.16483 0.85344 0.78246 0.78841 0.78254 1.18681 1.20628 1.20303 1.22569 1.00142 0.89479 0.97172 1.22064 0.77993 1.02025 0.98129 0.91732 0.90465 0.92665 0.81711 0.82497 0.90475 0.89731 0.97281 0.90374 1.02414 0.96992 0.92672 0.96274 0.89186 0.85859 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.45 71.24 0.60 -1.96 16 2 C -0.05 -0.80 10.35 24.52 0.25 -0.54 16 3 C -0.24 -4.90 9.35 23.43 0.22 -4.69 16 4 C 0.53 15.58 7.60 86.57 0.66 16.24 16 5 O -0.58 -20.47 12.58 -4.06 -0.05 -20.52 16 6 N -0.61 -18.28 3.00 -821.33 -2.47 -20.75 16 7 C 0.13 4.27 6.61 86.50 0.57 4.84 16 8 C 0.06 2.33 5.47 86.54 0.47 2.80 16 9 N -0.54 -22.89 4.62 -898.89 -4.15 -27.04 16 10 C 0.21 10.97 4.72 85.56 0.40 11.37 16 11 C -0.52 -29.44 8.41 25.60 0.22 -29.22 16 12 H 0.06 3.55 7.13 -2.91 -0.02 3.52 16 13 C 0.00 0.16 5.46 84.65 0.46 0.63 16 14 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 15 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 16 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 C 0.04 1.17 5.62 86.38 0.49 1.66 16 20 C 0.12 3.00 6.51 86.35 0.56 3.56 16 21 H 0.06 1.57 7.07 -2.39 -0.02 1.56 16 22 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.05 1.39 7.38 -2.39 -0.02 1.37 16 24 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 25 H 0.16 2.16 5.91 -2.91 -0.02 2.14 16 26 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.08 2.88 7.09 -2.39 -0.02 2.86 16 28 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.08 3.37 6.67 -2.39 -0.02 3.35 16 30 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 31 H 0.01 0.67 7.97 -2.39 -0.02 0.65 16 32 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 33 H 0.02 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.09 2.81 7.99 -2.39 -0.02 2.79 16 35 H 0.12 2.09 5.37 -2.39 -0.01 2.08 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -69.10 290.69 1.60 -67.49 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 1.05 Total: 5.67 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 4.91 Total: 4.69 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -6.33 Total: -103.44 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.05 Total: -20.52 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.10 1.60 -67.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308677947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.821 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds