Wall clock time and date at job start Sun Mar 29 2020 22:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46669 * 2 1 4 4 C 1.53002 * 109.46977 * 240.00468 * 2 1 3 5 5 C 1.50697 * 109.47362 * 60.00113 * 4 2 1 6 6 H 1.08002 * 120.00182 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99874 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00119 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46861 * 60.00117 * 9 7 5 11 11 H 1.48500 * 109.47392 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47316 * 300.00396 * 9 7 5 13 13 C 1.52990 * 109.47383 * 119.99856 * 2 1 3 14 14 N 1.46898 * 109.47431 * 300.00343 * 13 2 1 15 15 C 1.46901 * 111.00369 * 179.97438 * 14 13 2 16 16 C 1.50694 * 109.47272 * 180.02562 * 15 14 13 17 17 C 1.34326 * 126.16708 * 94.98392 * 16 15 14 18 18 O 1.34752 * 107.11592 * 179.80873 * 17 16 15 19 19 C 1.33971 * 107.75443 * 0.36395 * 18 17 16 20 20 N 1.30258 * 108.75619 * 359.62763 * 19 18 17 21 21 H 1.08999 * 109.47531 * 299.99977 * 1 2 3 22 22 H 1.08997 * 109.47386 * 59.99855 * 1 2 3 23 23 H 1.09004 * 109.47071 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46478 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47560 * 299.99693 * 3 2 1 26 26 H 1.08993 * 109.47290 * 60.00475 * 3 2 1 27 27 H 1.09003 * 109.46660 * 179.97438 * 4 2 1 28 28 H 1.08991 * 109.47044 * 299.99411 * 4 2 1 29 29 H 0.97002 * 119.99638 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47409 * 179.97438 * 13 2 1 31 31 H 1.09008 * 109.47267 * 60.00269 * 13 2 1 32 32 H 1.00905 * 110.99789 * 303.95305 * 14 13 2 33 33 H 1.08999 * 109.47114 * 59.99533 * 15 14 13 34 34 H 1.09000 * 109.46848 * 300.00320 * 15 14 13 35 35 H 1.07999 * 126.44771 * 0.05402 * 17 16 15 36 36 H 1.08002 * 125.62404 * 179.90033 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8712 -0.4814 -3.7320 8 7 2.6281 -1.5501 -3.8527 9 14 1.2480 0.3988 -5.2572 10 1 1.7421 1.7993 -5.2570 11 1 1.7431 -0.3011 -6.4697 12 1 -0.2370 0.3978 -5.2573 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0209 -0.6952 3.6703 16 6 1.4993 0.0413 4.8770 17 6 0.3864 -0.2566 5.5678 18 8 0.2879 0.6413 6.5677 19 6 1.3311 1.4764 6.4711 20 7 2.0636 1.1158 5.4562 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9565 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.1300 -0.7207 -1.2495 28 1 1.6767 -1.7488 -1.2493 29 1 2.8630 -1.8810 -4.7338 30 1 3.1300 -0.7216 1.2489 31 1 1.6767 -1.7489 1.2492 32 1 1.8198 0.9436 2.4401 33 1 3.1108 -0.6954 3.6872 34 1 1.6572 -1.7226 3.6868 35 1 -0.2984 -1.0662 5.3629 36 1 1.5338 2.3085 7.1291 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308980567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:46 Heat of formation + Delta-G solvation = 7.875304 kcal Electronic energy + Delta-G solvation = -16714.333466 eV Core-core repulsion = 14006.765185 eV Total energy + Delta-G solvation = -2707.568281 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.40666 -37.71683 -35.50748 -33.83135 -32.18459 -30.33967 -27.15062 -26.34449 -26.24624 -24.27899 -22.86442 -22.14806 -21.15792 -18.10563 -17.42540 -16.64889 -16.21504 -15.60526 -14.98793 -14.81441 -14.54360 -14.13483 -13.69419 -12.99250 -12.67673 -12.48772 -12.05111 -11.92858 -11.64874 -11.29739 -10.95083 -10.85090 -10.77023 -10.66964 -10.46196 -10.23963 -10.12082 -9.65844 -9.12805 -8.94050 -8.81011 -8.29216 -8.10120 -5.94026 -3.94084 1.38541 2.55341 2.77323 3.36488 3.40966 3.43363 4.00588 4.49236 4.64106 4.78756 4.93311 5.41714 5.47727 5.52567 5.65185 5.75359 5.79160 5.86816 6.01459 6.16551 6.27854 6.35236 6.53879 6.68628 6.81590 6.85509 7.21908 7.23386 7.28075 7.39281 7.58865 7.67398 7.72886 7.88070 8.06276 8.50811 9.11020 9.68564 11.17644 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.060324 B = 0.004200 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.051518 B = 6665.237196 C = 6763.901680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.069 3.931 14 N -0.683 5.683 15 C 0.136 3.864 16 C -0.008 4.008 17 C -0.056 4.056 18 O -0.209 6.209 19 C 0.164 3.836 20 N -0.484 5.484 21 H 0.041 0.959 22 H 0.054 0.946 23 H 0.039 0.961 24 H 0.041 0.959 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.013 0.987 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.344 0.656 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.216 0.784 36 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 3.120 18.685 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.004 4.004 5 C -0.546 4.546 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.059 4.059 14 N -0.315 5.315 15 C 0.007 3.993 16 C -0.128 4.128 17 C -0.128 4.128 18 O -0.095 6.095 19 C -0.063 4.063 20 N -0.213 5.213 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.163 0.837 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.232 0.768 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -3.143 2.976 18.393 18.895 hybrid contribution 0.111 0.371 -0.708 0.808 sum -3.032 3.348 17.684 18.252 Atomic orbital electron populations 1.21599 0.95026 1.00547 1.00150 1.20629 0.95846 0.95044 0.94328 1.21772 0.99780 0.96730 1.00392 1.19121 0.95934 0.95181 0.90116 1.21205 1.30772 1.11950 0.90633 0.92357 1.25010 0.95404 0.95119 0.99024 1.69960 1.37231 1.23238 1.23375 0.86726 0.79193 0.79787 0.82693 1.20356 1.21446 1.20321 1.22140 0.96570 0.98109 0.89094 1.60643 1.63466 1.06880 1.00548 1.20161 0.97504 0.96396 0.85277 1.21736 0.94990 0.96007 1.00029 1.24839 1.01252 0.96842 0.89831 1.84483 1.44600 1.35038 1.45382 1.28038 0.83346 0.96824 0.98093 1.70341 1.30218 1.12703 1.08074 0.93975 0.92692 0.94146 0.94034 0.91715 0.94842 0.96866 0.96644 0.93122 0.95614 0.91393 0.83708 0.93755 0.89550 0.76774 0.73722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 3 C -0.13 -2.49 7.89 37.16 0.29 -2.19 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.97 7.65 -34.44 -0.26 -14.23 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.07 1.20 4.65 -3.83 -0.02 1.19 16 14 N -0.68 -10.32 5.70 -115.06 -0.66 -10.97 16 15 C 0.14 1.76 6.23 -4.98 -0.03 1.73 16 16 C -0.01 -0.10 6.62 -82.82 -0.55 -0.65 16 17 C -0.06 -0.59 12.08 29.35 0.35 -0.23 16 18 O -0.21 -2.15 10.78 5.35 0.06 -2.09 16 19 C 0.16 1.54 13.23 52.09 0.69 2.23 16 20 N -0.48 -6.21 11.29 -11.18 -0.13 -6.34 16 21 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 22 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 1.34 6.62 -51.93 -0.34 0.99 16 26 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 32 H 0.34 5.40 6.76 -39.29 -0.27 5.13 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.22 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.25 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 297.84 15.07 4.49 4.49 Total: -1.00 -31.61 297.84 -5.40 -37.00 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.35 Total: 0.62 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 0.47 Total: -13.17 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.05 Total: -43.54 kcal Atomic # 8 Polarization: -2.15 SS G_CDS: 0.06 Total: -2.09 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.61 -5.40 -37.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308980567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.879 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds