Wall clock time and date at job start Sun Mar 29 2020 22:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46669 * 2 1 4 4 C 1.53002 * 109.46977 * 240.00468 * 2 1 3 5 5 C 1.50697 * 109.47362 * 60.00113 * 4 2 1 6 6 H 1.08002 * 120.00182 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99874 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00119 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46861 * 60.00117 * 9 7 5 11 11 H 1.48500 * 109.47392 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47316 * 300.00396 * 9 7 5 13 13 C 1.52990 * 109.47383 * 119.99856 * 2 1 3 14 14 N 1.46898 * 109.47431 * 300.00343 * 13 2 1 15 15 C 1.46901 * 111.00369 * 179.97438 * 14 13 2 16 16 C 1.50694 * 109.47272 * 180.02562 * 15 14 13 17 17 C 1.34326 * 126.16708 * 94.98392 * 16 15 14 18 18 O 1.34752 * 107.11592 * 179.80873 * 17 16 15 19 19 C 1.33971 * 107.75443 * 0.36395 * 18 17 16 20 20 N 1.30258 * 108.75619 * 359.62763 * 19 18 17 21 21 H 1.08999 * 109.47531 * 299.99977 * 1 2 3 22 22 H 1.08997 * 109.47386 * 59.99855 * 1 2 3 23 23 H 1.09004 * 109.47071 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46478 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47560 * 299.99693 * 3 2 1 26 26 H 1.08993 * 109.47290 * 60.00475 * 3 2 1 27 27 H 1.09003 * 109.46660 * 179.97438 * 4 2 1 28 28 H 1.08991 * 109.47044 * 299.99411 * 4 2 1 29 29 H 0.97002 * 119.99638 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47409 * 179.97438 * 13 2 1 31 31 H 1.09008 * 109.47267 * 60.00269 * 13 2 1 32 32 H 1.00905 * 110.99789 * 303.95305 * 14 13 2 33 33 H 1.08999 * 109.47114 * 59.99533 * 15 14 13 34 34 H 1.09000 * 109.46848 * 300.00320 * 15 14 13 35 35 H 1.07999 * 126.44771 * 0.05402 * 17 16 15 36 36 H 1.08002 * 125.62404 * 179.90033 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8712 -0.4814 -3.7320 8 7 2.6281 -1.5501 -3.8527 9 14 1.2480 0.3988 -5.2572 10 1 1.7421 1.7993 -5.2570 11 1 1.7431 -0.3011 -6.4697 12 1 -0.2370 0.3978 -5.2573 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0209 -0.6952 3.6703 16 6 1.4993 0.0413 4.8770 17 6 0.3864 -0.2566 5.5678 18 8 0.2879 0.6413 6.5677 19 6 1.3311 1.4764 6.4711 20 7 2.0636 1.1158 5.4562 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9565 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.1300 -0.7207 -1.2495 28 1 1.6767 -1.7488 -1.2493 29 1 2.8630 -1.8810 -4.7338 30 1 3.1300 -0.7216 1.2489 31 1 1.6767 -1.7489 1.2492 32 1 1.8198 0.9436 2.4401 33 1 3.1108 -0.6954 3.6872 34 1 1.6572 -1.7226 3.6868 35 1 -0.2984 -1.0662 5.3629 36 1 1.5338 2.3085 7.1291 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308980567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:46 Heat of formation + Delta-G solvation = -15.503842 kcal Electronic energy + Delta-G solvation = -16715.347262 eV Core-core repulsion = 14006.765185 eV Total energy + Delta-G solvation = -2708.582077 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.18422 -39.23256 -36.62645 -35.13892 -34.06838 -31.32344 -29.04377 -27.90739 -27.58731 -25.83775 -23.90877 -23.57311 -22.05111 -19.61150 -18.38393 -18.30236 -17.45670 -16.75858 -16.58277 -15.83915 -15.75000 -15.53870 -15.08508 -14.59423 -14.27589 -13.91530 -13.74359 -13.24913 -13.08496 -12.74635 -12.71112 -12.42320 -12.24060 -12.21252 -12.09796 -11.91545 -11.50907 -11.37315 -10.86925 -10.76874 -10.48723 -9.85227 -9.34024 -8.12854 -6.19820 0.63607 1.41771 1.43935 1.51252 1.71877 2.09254 2.44895 3.21020 3.23671 3.53916 3.85996 4.13021 4.16944 4.24312 4.37920 4.60190 4.66210 4.77301 4.80351 4.90966 4.95899 5.03260 5.07348 5.20175 5.21584 5.41072 5.51889 5.53967 5.58758 5.64963 5.87258 5.93357 6.02946 6.37374 6.40147 6.83058 6.94881 7.47377 8.99304 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.060324 B = 0.004200 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.051518 B = 6665.237196 C = 6763.901680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.516 4.516 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.081 3.919 14 N -0.676 5.676 15 C 0.139 3.861 16 C -0.037 4.037 17 C -0.048 4.048 18 O -0.212 6.212 19 C 0.178 3.822 20 N -0.527 5.527 21 H 0.064 0.936 22 H 0.038 0.962 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.048 0.952 26 H 0.061 0.939 27 H -0.016 1.016 28 H -0.012 1.012 29 H 0.260 0.740 30 H 0.017 0.983 31 H 0.067 0.933 32 H 0.341 0.659 33 H 0.035 0.965 34 H 0.101 0.899 35 H 0.242 0.758 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 4.315 20.045 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.056 4.056 3 C -0.180 4.180 4 C 0.003 3.997 5 C -0.554 4.554 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.048 4.048 14 N -0.308 5.308 15 C 0.010 3.990 16 C -0.156 4.156 17 C -0.119 4.119 18 O -0.098 6.098 19 C -0.049 4.049 20 N -0.256 5.256 21 H 0.083 0.917 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.002 0.998 28 H 0.007 0.993 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.086 0.914 32 H 0.160 0.840 33 H 0.053 0.947 34 H 0.120 0.880 35 H 0.258 0.742 36 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -4.440 4.178 19.765 20.683 hybrid contribution 0.530 0.004 -1.035 1.162 sum -3.910 4.181 18.730 19.585 Atomic orbital electron populations 1.21492 0.94129 1.00339 1.00367 1.20495 0.96440 0.95353 0.93267 1.21682 0.99395 0.95966 1.00914 1.19000 0.93968 0.94250 0.92513 1.21591 1.30307 1.11998 0.91512 0.91711 1.25903 0.95680 0.95890 1.02509 1.70102 1.38750 1.24940 1.24093 0.85644 0.78963 0.78762 0.78554 1.19393 1.21302 1.19290 1.21862 0.95952 0.97898 0.89069 1.60602 1.63190 1.06589 1.00450 1.20146 0.97042 0.97146 0.84639 1.21679 0.96296 0.96954 1.00623 1.25299 1.00711 0.96910 0.88990 1.84519 1.44860 1.35153 1.45268 1.29006 0.81968 0.96668 0.97219 1.70307 1.31806 1.13689 1.09811 0.91703 0.94326 0.94582 0.94603 0.93336 0.92042 0.99795 0.99344 0.93148 0.96435 0.91414 0.84026 0.94707 0.88048 0.74185 0.69522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.04 8.06 71.98 0.58 -3.46 16 2 C -0.06 -2.22 0.60 -52.18 -0.03 -2.25 16 3 C -0.12 -4.62 7.89 71.98 0.57 -4.05 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.52 -28.77 7.65 25.60 0.20 -28.58 16 6 H 0.06 3.47 5.68 -2.91 -0.02 3.45 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 8 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 9 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 C 0.08 2.80 4.65 86.30 0.40 3.20 16 14 N -0.68 -19.49 5.70 -517.95 -2.95 -22.44 16 15 C 0.14 3.44 6.23 85.56 0.53 3.98 16 16 C -0.04 -0.87 6.62 41.26 0.27 -0.60 16 17 C -0.05 -0.88 12.08 66.93 0.81 -0.07 16 18 O -0.21 -3.75 10.78 -3.76 -0.04 -3.79 16 19 C 0.18 2.87 13.23 130.48 1.73 4.59 16 20 N -0.53 -12.60 11.29 -304.07 -3.43 -16.04 16 21 H 0.06 2.17 7.60 -2.39 -0.02 2.15 16 22 H 0.04 1.57 6.62 -2.39 -0.02 1.56 16 23 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.97 6.62 -2.39 -0.02 1.95 16 26 H 0.06 1.96 6.57 -2.39 -0.02 1.95 16 27 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.34 10.16 6.76 -89.69 -0.61 9.55 16 33 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.24 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.29 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -68.72 297.84 1.98 -66.74 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.46 Total: 10.84 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 5.64 Total: -24.73 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -6.10 Total: -95.74 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.04 Total: -3.79 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -68.72 1.98 -66.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308980567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.235 kcal (2) G-P(sol) polarization free energy of solvation -68.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds