Wall clock time and date at job start Sun Mar 29 2020 22:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29822 * 118.55834 * 2 1 4 4 C 1.50141 * 123.28945 * 180.37452 * 3 2 1 5 5 N 1.46848 * 110.26950 * 342.95231 * 4 3 2 6 6 C 1.46906 * 110.99897 * 287.53448 * 5 4 3 7 7 C 1.53001 * 109.47194 * 293.95426 * 6 5 4 8 8 N 1.46498 * 109.47077 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00107 * 180.02562 * 8 7 6 10 10 O 1.21692 * 119.99755 * 359.97438 * 9 8 7 11 11 C 1.46372 * 120.00145 * 180.02562 * 9 8 7 12 12 H 1.08003 * 119.99993 * 359.97438 * 11 9 8 13 13 C 1.40045 * 119.99956 * 179.97438 * 11 9 8 14 14 N 1.30671 * 120.00548 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00137 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46679 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47329 * 119.99730 * 15 13 11 18 18 H 1.48502 * 109.47343 * 240.00109 * 15 13 11 19 19 C 1.47229 * 110.21944 * 50.91442 * 5 4 3 20 20 C 1.50306 * 118.55068 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.46729 * 270.02122 * 1 2 3 22 22 H 1.08995 * 109.47157 * 30.01379 * 1 2 3 23 23 H 1.08994 * 109.47275 * 150.02224 * 1 2 3 24 24 H 1.07998 * 118.35227 * 0.40083 * 3 2 1 25 25 H 1.08997 * 109.33411 * 103.19329 * 4 3 2 26 26 H 1.08992 * 109.33906 * 222.70706 * 4 3 2 27 27 H 1.08996 * 109.47109 * 53.95646 * 6 5 4 28 28 H 1.09007 * 109.46805 * 173.96012 * 6 5 4 29 29 H 1.09004 * 109.47446 * 300.00351 * 7 6 5 30 30 H 1.08997 * 109.46752 * 60.00413 * 7 6 5 31 31 H 0.96997 * 119.99843 * 359.97438 * 8 7 6 32 32 H 0.96992 * 120.00592 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.63075 * 171.51137 * 19 5 4 34 34 H 1.09001 * 109.63801 * 50.89967 * 19 5 4 35 35 H 1.09004 * 109.43300 * 283.57594 * 20 2 1 36 36 H 1.08997 * 109.43380 * 43.42211 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2641 -0.0082 5 7 4.2418 -0.0077 0.3881 6 6 4.0641 -0.2540 1.8255 7 6 4.8439 0.7936 2.6226 8 7 4.6672 0.5477 4.0559 9 6 5.2662 1.3517 4.9565 10 8 5.9543 2.2818 4.5790 11 6 5.0901 1.1056 6.3886 12 1 4.4798 0.2799 6.7237 13 6 5.7130 1.9408 7.3244 14 7 6.4510 2.9401 6.9192 15 14 5.4877 1.6273 9.1521 16 1 4.6120 0.4439 9.3469 17 1 6.8103 1.3719 9.7773 18 1 4.8623 2.8162 9.7850 19 6 3.6860 -1.1137 -0.4090 20 6 2.2254 -1.3203 0.0006 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5140 23 1 -0.3633 -0.8901 -0.5135 24 1 1.5380 2.0451 0.0066 25 1 3.9584 1.5309 -1.0107 26 1 3.9253 2.0448 0.6900 27 1 3.0057 -0.1883 2.0772 28 1 4.4354 -1.2487 2.0722 29 1 5.9025 0.7280 2.3708 30 1 4.4727 1.7883 2.3758 31 1 4.1185 -0.1935 4.3568 32 1 6.8827 3.5184 7.5673 33 1 4.2527 -2.0247 -0.2166 34 1 3.7376 -0.8636 -1.4687 35 1 2.1868 -1.7537 1.0000 36 1 1.7429 -1.9960 -0.7056 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331086856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:09 Heat of formation + Delta-G solvation = -25.359539 kcal Electronic energy + Delta-G solvation = -16871.557738 eV Core-core repulsion = 14162.548287 eV Total energy + Delta-G solvation = -2709.009452 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78377 -37.17438 -34.62961 -33.02955 -32.19799 -30.98689 -29.14479 -27.09879 -25.82557 -23.87750 -22.94845 -21.01132 -19.63083 -17.64745 -16.78720 -15.92071 -15.53918 -15.28909 -14.90070 -14.46936 -14.04653 -13.97462 -13.48261 -13.44442 -12.69638 -12.66627 -12.28775 -11.98067 -11.91069 -11.70844 -11.50844 -11.19124 -11.05203 -10.94929 -10.63126 -10.44574 -10.38089 -10.15975 -8.83538 -8.79397 -8.23436 -7.56979 -7.42891 -6.14932 -4.60176 2.11901 3.15136 3.22995 3.27564 3.90265 4.16541 4.63118 4.63765 4.79502 4.97819 5.00172 5.19802 5.29884 5.41622 5.43805 5.48519 5.56979 5.58873 5.72653 5.77681 5.80258 5.83732 5.89019 5.93826 5.99754 6.49280 6.58146 6.66564 6.86227 7.11875 7.17992 7.46924 7.97670 8.15849 8.37380 9.06221 9.58884 10.64510 10.83477 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039826 B = 0.004741 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.886788 B = 5903.918912 C = 6109.539668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.132 4.132 3 C -0.185 4.185 4 C 0.073 3.927 5 N -0.524 5.524 6 C 0.043 3.957 7 C 0.137 3.863 8 N -0.768 5.768 9 C 0.555 3.445 10 O -0.580 6.580 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.907 3.093 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.054 3.946 20 C -0.121 4.121 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.378 0.622 32 H 0.267 0.733 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.798 -7.820 -12.664 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.132 4.132 3 C -0.205 4.205 4 C -0.055 4.055 5 N -0.247 5.247 6 C -0.085 4.085 7 C 0.012 3.988 8 N -0.424 5.424 9 C 0.359 3.641 10 O -0.463 6.463 11 C -0.583 4.583 12 H 0.086 0.914 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.732 3.268 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.075 4.075 20 C -0.159 4.159 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.124 0.876 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.209 0.791 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.626 -6.925 -13.003 17.072 hybrid contribution -1.423 -0.524 1.208 1.938 sum -10.049 -7.449 -11.795 17.193 Atomic orbital electron populations 1.20884 0.92505 1.02006 1.01989 1.20920 0.95724 0.94834 1.01738 1.22784 0.98087 0.97673 1.01928 1.21214 0.88983 0.93091 1.02169 1.62612 1.55457 1.02230 1.04362 1.22335 0.99057 1.00058 0.87038 1.20801 0.99149 0.96343 0.82507 1.46075 1.56787 1.35454 1.04064 1.18213 0.78852 0.81001 0.86077 1.90599 1.42477 1.32322 1.80917 1.20922 1.32860 1.15170 0.89348 0.91441 1.25705 0.93300 0.93829 1.00367 1.70032 1.22699 1.12182 1.34843 0.86331 0.78622 0.78952 0.82918 1.18818 1.20161 1.20194 1.22265 0.92135 0.94968 0.98115 1.21068 0.97106 0.95246 1.02476 0.91685 0.92089 0.92189 0.87567 0.89670 0.88881 0.93989 0.90773 0.92677 0.93519 0.79102 0.92198 0.90241 0.90600 0.90601 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.91 36.01 0.36 -0.75 16 2 C -0.13 -1.49 5.25 -100.93 -0.53 -2.02 16 3 C -0.19 -2.26 8.95 -35.97 -0.32 -2.58 16 4 C 0.07 0.96 5.83 -5.27 -0.03 0.93 16 5 N -0.52 -7.21 5.03 -236.11 -1.19 -8.40 16 6 C 0.04 0.66 4.17 -3.82 -0.02 0.65 16 7 C 0.14 2.77 5.63 -4.04 -0.02 2.75 16 8 N -0.77 -17.76 5.55 -61.72 -0.34 -18.11 16 9 C 0.55 16.26 7.75 -12.99 -0.10 16.16 16 10 O -0.58 -19.37 15.02 5.20 0.08 -19.29 16 11 C -0.55 -15.74 9.54 -35.63 -0.34 -16.08 16 12 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 13 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 14 N -0.77 -23.49 11.83 55.55 0.66 -22.83 16 15 Si 0.91 20.39 29.56 -169.99 -5.02 15.37 16 16 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 C 0.05 0.59 6.03 -3.60 -0.02 0.56 16 20 C -0.12 -1.24 5.23 -28.03 -0.15 -1.39 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.54 7.94 -51.93 -0.41 0.12 16 23 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 24 H 0.11 1.22 7.87 -52.49 -0.41 0.81 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.09 1.37 6.01 -51.93 -0.31 1.06 16 27 H 0.04 0.64 6.00 -51.93 -0.31 0.33 16 28 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.00 6.33 -51.93 -0.33 0.67 16 31 H 0.38 7.64 8.45 -40.82 -0.35 7.30 16 32 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.08 0.82 7.13 -51.93 -0.37 0.45 16 36 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 LS Contribution 292.93 15.07 4.41 4.41 Total: -1.00 -34.43 292.93 -8.09 -42.52 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.41 Total: 5.70 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.27 Total: 0.62 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.87 Total: -49.33 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.08 Total: -19.29 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.43 -8.09 -42.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331086856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.161 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds