Wall clock time and date at job start Sun Mar 29 2020 22:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29822 * 118.55834 * 2 1 4 4 C 1.50141 * 123.28945 * 180.37452 * 3 2 1 5 5 N 1.46848 * 110.26950 * 342.95231 * 4 3 2 6 6 C 1.46906 * 110.99897 * 287.53448 * 5 4 3 7 7 C 1.53001 * 109.47194 * 293.95426 * 6 5 4 8 8 N 1.46498 * 109.47077 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00107 * 180.02562 * 8 7 6 10 10 O 1.21692 * 119.99755 * 359.97438 * 9 8 7 11 11 C 1.46372 * 120.00145 * 180.02562 * 9 8 7 12 12 H 1.08003 * 119.99993 * 359.97438 * 11 9 8 13 13 C 1.40045 * 119.99956 * 179.97438 * 11 9 8 14 14 N 1.30671 * 120.00548 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00137 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46679 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47329 * 119.99730 * 15 13 11 18 18 H 1.48502 * 109.47343 * 240.00109 * 15 13 11 19 19 C 1.47229 * 110.21944 * 50.91442 * 5 4 3 20 20 C 1.50306 * 118.55068 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.46729 * 270.02122 * 1 2 3 22 22 H 1.08995 * 109.47157 * 30.01379 * 1 2 3 23 23 H 1.08994 * 109.47275 * 150.02224 * 1 2 3 24 24 H 1.07998 * 118.35227 * 0.40083 * 3 2 1 25 25 H 1.08997 * 109.33411 * 103.19329 * 4 3 2 26 26 H 1.08992 * 109.33906 * 222.70706 * 4 3 2 27 27 H 1.08996 * 109.47109 * 53.95646 * 6 5 4 28 28 H 1.09007 * 109.46805 * 173.96012 * 6 5 4 29 29 H 1.09004 * 109.47446 * 300.00351 * 7 6 5 30 30 H 1.08997 * 109.46752 * 60.00413 * 7 6 5 31 31 H 0.96997 * 119.99843 * 359.97438 * 8 7 6 32 32 H 0.96992 * 120.00592 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.63075 * 171.51137 * 19 5 4 34 34 H 1.09001 * 109.63801 * 50.89967 * 19 5 4 35 35 H 1.09004 * 109.43300 * 283.57594 * 20 2 1 36 36 H 1.08997 * 109.43380 * 43.42211 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2641 -0.0082 5 7 4.2418 -0.0077 0.3881 6 6 4.0641 -0.2540 1.8255 7 6 4.8439 0.7936 2.6226 8 7 4.6672 0.5477 4.0559 9 6 5.2662 1.3517 4.9565 10 8 5.9543 2.2818 4.5790 11 6 5.0901 1.1056 6.3886 12 1 4.4798 0.2799 6.7237 13 6 5.7130 1.9408 7.3244 14 7 6.4510 2.9401 6.9192 15 14 5.4877 1.6273 9.1521 16 1 4.6120 0.4439 9.3469 17 1 6.8103 1.3719 9.7773 18 1 4.8623 2.8162 9.7850 19 6 3.6860 -1.1137 -0.4090 20 6 2.2254 -1.3203 0.0006 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5140 23 1 -0.3633 -0.8901 -0.5135 24 1 1.5380 2.0451 0.0066 25 1 3.9584 1.5309 -1.0107 26 1 3.9253 2.0448 0.6900 27 1 3.0057 -0.1883 2.0772 28 1 4.4354 -1.2487 2.0722 29 1 5.9025 0.7280 2.3708 30 1 4.4727 1.7883 2.3758 31 1 4.1185 -0.1935 4.3568 32 1 6.8827 3.5184 7.5673 33 1 4.2527 -2.0247 -0.2166 34 1 3.7376 -0.8636 -1.4687 35 1 2.1868 -1.7537 1.0000 36 1 1.7429 -1.9960 -0.7056 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331086856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:08 Heat of formation + Delta-G solvation = -51.521323 kcal Electronic energy + Delta-G solvation = -16872.692198 eV Core-core repulsion = 14162.548287 eV Total energy + Delta-G solvation = -2710.143912 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82635 -39.28571 -36.01037 -34.76710 -34.24497 -31.92531 -30.63285 -28.57314 -27.44225 -24.99438 -24.12742 -22.21096 -21.72851 -19.34251 -18.20184 -17.38858 -17.08310 -16.76826 -16.05149 -15.90626 -15.64029 -15.20246 -15.05386 -14.45986 -14.30533 -14.07008 -13.53046 -13.27074 -13.06894 -12.90606 -12.76850 -12.76202 -12.66258 -12.57304 -12.27873 -11.96790 -11.84180 -11.54943 -10.94815 -9.89607 -9.72413 -9.48160 -9.28623 -8.29648 -6.86556 1.21601 1.40757 1.41186 1.59410 2.24478 2.46790 2.72153 3.43334 3.60915 3.78659 3.91653 3.96805 4.16096 4.19387 4.23643 4.44121 4.57570 4.64915 4.67261 4.77336 4.80615 4.86718 4.94026 4.99817 5.03430 5.07669 5.13332 5.31896 5.61876 5.86314 5.91648 6.07451 6.09671 6.23371 6.26991 6.86146 7.54094 8.48495 8.67160 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039826 B = 0.004741 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.886788 B = 5903.918912 C = 6109.539668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.127 4.127 3 C -0.206 4.206 4 C 0.075 3.925 5 N -0.538 5.538 6 C 0.064 3.936 7 C 0.143 3.857 8 N -0.754 5.754 9 C 0.535 3.465 10 O -0.634 6.634 11 C -0.573 4.573 12 H 0.090 0.910 13 C 0.027 3.973 14 N -0.823 5.823 15 Si 1.001 2.999 16 H -0.246 1.246 17 H -0.268 1.268 18 H -0.268 1.268 19 C 0.053 3.947 20 C -0.120 4.120 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.031 0.969 30 H 0.028 0.972 31 H 0.395 0.605 32 H 0.275 0.725 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.412 -9.971 -12.193 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.128 4.128 3 C -0.226 4.226 4 C -0.053 4.053 5 N -0.260 5.260 6 C -0.064 4.064 7 C 0.017 3.983 8 N -0.409 5.409 9 C 0.340 3.660 10 O -0.521 6.521 11 C -0.609 4.609 12 H 0.108 0.892 13 C -0.188 4.188 14 N -0.453 5.453 15 Si 0.820 3.180 16 H -0.168 1.168 17 H -0.193 1.193 18 H -0.193 1.193 19 C -0.074 4.074 20 C -0.158 4.158 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.125 0.875 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.229 0.771 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.283 -9.132 -12.574 18.634 hybrid contribution -0.926 0.137 0.956 1.338 sum -11.209 -8.995 -11.618 18.480 Atomic orbital electron populations 1.20916 0.91121 1.03141 1.02192 1.21245 0.96883 0.94896 0.99750 1.22745 0.97366 0.98415 1.04074 1.21132 0.89988 0.92209 1.01990 1.62577 1.56490 1.03476 1.03484 1.22044 0.98158 0.98540 0.87671 1.20814 0.98523 0.97453 0.81468 1.45726 1.55642 1.34746 1.04793 1.18678 0.78778 0.81034 0.87548 1.90552 1.44933 1.34722 1.81933 1.21470 1.33597 1.16245 0.89619 0.89240 1.27024 0.92085 0.92868 1.06805 1.70201 1.23905 1.13630 1.37574 0.84928 0.79123 0.79545 0.74387 1.16847 1.19283 1.19333 1.22381 0.92718 0.94196 0.98153 1.21105 0.96568 0.95055 1.03062 0.91839 0.91657 0.90451 0.87506 0.88507 0.91606 0.93572 0.89358 0.95059 0.95359 0.77128 0.91535 0.89033 0.89480 0.90717 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.91 71.24 0.71 -1.22 16 2 C -0.13 -2.61 5.25 -15.40 -0.08 -2.69 16 3 C -0.21 -4.89 8.95 26.69 0.24 -4.65 16 4 C 0.07 1.96 5.83 85.39 0.50 2.46 16 5 N -0.54 -14.33 5.03 -900.92 -4.53 -18.87 16 6 C 0.06 1.92 4.17 86.30 0.36 2.28 16 7 C 0.14 5.93 5.63 86.38 0.49 6.42 16 8 N -0.75 -35.40 5.55 -467.41 -2.59 -38.00 16 9 C 0.54 32.27 7.75 86.36 0.67 32.93 16 10 O -0.63 -44.27 15.02 -4.32 -0.06 -44.33 16 11 C -0.57 -33.15 9.54 24.83 0.24 -32.91 16 12 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 13 C 0.03 1.53 5.50 85.30 0.47 2.00 16 14 N -0.82 -51.52 11.83 21.83 0.26 -51.26 16 15 Si 1.00 41.35 29.56 68.60 2.03 43.38 16 16 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 17 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 18 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 19 C 0.05 1.03 6.03 86.27 0.52 1.55 16 20 C -0.12 -2.11 5.23 29.76 0.16 -1.96 16 21 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.06 1.02 7.94 -2.39 -0.02 1.00 16 23 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 24 H 0.11 2.45 7.87 -2.91 -0.02 2.43 16 25 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.07 2.07 6.01 -2.39 -0.01 2.05 16 27 H 0.05 1.35 6.00 -2.39 -0.01 1.34 16 28 H 0.09 2.40 8.09 -2.38 -0.02 2.38 16 29 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.03 1.28 6.33 -2.39 -0.02 1.27 16 31 H 0.40 15.72 8.45 -92.71 -0.78 14.93 16 32 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 33 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 35 H 0.07 1.38 7.13 -2.39 -0.02 1.36 16 36 H 0.10 1.30 8.13 -2.39 -0.02 1.28 16 Total: -1.00 -76.88 292.93 -0.36 -77.24 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.29 Total: 27.62 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 4.26 Total: 4.22 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -6.87 Total: -108.12 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -0.06 Total: -44.33 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -76.88 -0.36 -77.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331086856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.722 kcal (2) G-P(sol) polarization free energy of solvation -76.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds