Wall clock time and date at job start Sun Mar 29 2020 22:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 119.99928 * 2 1 4 4 H 1.08998 * 109.46310 * 5.02042 * 3 2 1 5 5 C 1.53036 * 109.45966 * 124.99843 * 3 2 1 6 6 C 1.53123 * 109.27788 * 179.18488 * 5 3 2 7 7 C 1.53124 * 109.15980 * 302.34618 * 6 5 3 8 8 C 1.53041 * 109.27510 * 57.65355 * 7 6 5 9 9 N 1.46842 * 109.52407 * 300.81747 * 8 7 6 10 10 C 1.46903 * 111.00077 * 185.84059 * 9 8 7 11 11 C 1.50708 * 109.46829 * 65.79231 * 10 9 8 12 12 O 1.21294 * 119.99938 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99709 * 180.02562 * 11 10 9 14 14 C 1.37098 * 120.00039 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99896 * 0.02562 * 14 13 11 16 16 C 1.38949 * 120.00481 * 179.97438 * 14 13 11 17 17 N 1.31412 * 119.99680 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48488 * 109.47117 * 59.99878 * 18 16 14 20 20 H 1.48499 * 109.47254 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46876 * 300.00218 * 18 16 14 22 22 H 1.08000 * 119.99928 * 179.97438 * 1 2 3 23 23 H 1.07996 * 120.00214 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00423 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.50632 * 299.12781 * 5 3 2 26 26 H 1.09006 * 109.50216 * 59.24575 * 5 3 2 27 27 H 1.09000 * 109.52181 * 62.25097 * 6 5 3 28 28 H 1.08997 * 109.52376 * 182.44203 * 6 5 3 29 29 H 1.08997 * 109.50272 * 297.71554 * 7 6 5 30 30 H 1.08997 * 109.53375 * 177.61494 * 7 6 5 31 31 H 1.09006 * 109.45562 * 180.80294 * 8 7 6 32 32 H 1.08991 * 109.45245 * 60.83364 * 8 7 6 33 33 H 1.08996 * 109.47208 * 185.79079 * 10 9 8 34 34 H 1.08994 * 109.47072 * 305.79600 * 10 9 8 35 35 H 0.97000 * 120.00337 * 359.97438 * 13 11 10 36 36 H 0.96997 * 119.99677 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3584 2.1315 0.0899 5 6 3.0351 1.3329 1.1820 6 6 3.8128 2.6518 1.1663 7 6 4.5465 2.7867 -0.1710 8 6 3.5309 2.7168 -1.3137 9 7 2.8139 1.4366 -1.2554 10 6 1.9291 1.2754 -2.4169 11 6 2.7595 1.1706 -3.6702 12 8 3.9693 1.2253 -3.6024 13 7 2.1578 1.0170 -4.8663 14 6 2.9132 0.9222 -6.0065 15 1 3.9905 0.9701 -5.9461 16 6 2.2929 0.7633 -7.2396 17 7 0.9822 0.7045 -7.3131 18 14 3.3222 0.6334 -8.7931 19 1 4.2251 -0.5410 -8.6918 20 1 2.4278 0.4710 -9.9674 21 1 4.1319 1.8678 -8.9551 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 2.4764 1.2509 2.1144 26 1 3.7318 0.4986 1.1000 27 1 3.1201 3.4846 1.2873 28 1 4.5367 2.6576 1.9811 29 1 5.2669 1.9753 -0.2742 30 1 5.0681 3.7431 -0.2056 31 1 4.0518 2.7982 -2.2678 32 1 2.8192 3.5365 -1.2174 33 1 1.3348 0.3694 -2.2980 34 1 1.2664 2.1375 -2.4913 35 1 1.1903 0.9736 -4.9205 36 1 0.5492 0.5940 -8.1740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331142263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:29 Heat of formation + Delta-G solvation = -19.234111 kcal Electronic energy + Delta-G solvation = -17269.570555 eV Core-core repulsion = 14560.826722 eV Total energy + Delta-G solvation = -2708.743833 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.40250 -37.60453 -34.05244 -33.96802 -32.75256 -31.16596 -29.50682 -27.36502 -24.61662 -23.03548 -22.69090 -19.66894 -19.59927 -19.08021 -17.80279 -16.14855 -15.60032 -14.94884 -14.57793 -14.48728 -14.16452 -13.85377 -13.53843 -13.42134 -13.08868 -12.66782 -12.33267 -11.76857 -11.53100 -11.45112 -11.26612 -10.98191 -10.92568 -10.60686 -10.41908 -10.30565 -10.17643 -10.14196 -9.41324 -9.27455 -8.34615 -7.92637 -7.74802 -6.37581 -3.78221 2.31305 3.22687 3.27913 3.32459 3.96341 4.08686 4.30019 4.77554 5.00667 5.06979 5.16075 5.23249 5.30378 5.34284 5.49706 5.61992 5.76079 5.79949 5.91250 5.92095 5.95692 6.05610 6.14776 6.20329 6.27698 6.34698 6.55572 6.61209 6.66785 6.79330 7.43118 7.54949 7.59063 8.11024 8.66943 9.22444 9.59654 10.12007 10.80271 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035385 B = 0.005854 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.112640 B = 4781.971494 C = 5383.913093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C 0.109 3.891 4 H 0.038 0.962 5 C -0.106 4.106 6 C -0.121 4.121 7 C -0.114 4.114 8 C 0.052 3.948 9 N -0.506 5.506 10 C 0.045 3.955 11 C 0.445 3.555 12 O -0.577 6.577 13 N -0.565 5.565 14 C -0.298 4.298 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.903 5.903 18 Si 0.930 3.070 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.099 0.901 23 H 0.093 0.907 24 H 0.114 0.886 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.019 0.981 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.392 0.608 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 1.999 14.315 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.153 4.153 3 C 0.001 3.999 4 H 0.056 0.944 5 C -0.144 4.144 6 C -0.158 4.158 7 C -0.151 4.151 8 C -0.075 4.075 9 N -0.231 5.231 10 C -0.086 4.086 11 C 0.231 3.769 12 O -0.462 6.462 13 N -0.202 5.202 14 C -0.428 4.428 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.545 5.545 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.200 1.200 22 H 0.117 0.883 23 H 0.111 0.889 24 H 0.132 0.868 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.037 0.963 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.225 0.775 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.101 1.651 14.165 14.261 hybrid contribution -0.917 0.483 -0.898 1.371 sum -1.018 2.134 13.267 13.476 Atomic orbital electron populations 1.23849 0.95864 1.01777 1.01869 1.22921 0.95501 0.98523 0.98369 1.20819 0.93795 0.94338 0.90945 0.94370 1.21556 0.98007 0.98511 0.96291 1.21603 0.99043 0.97294 0.97899 1.21553 0.98227 1.01762 0.93603 1.22268 0.95868 0.88002 1.01381 1.61538 1.27399 1.34474 0.99695 1.21864 0.94490 1.01527 0.90738 1.19772 0.88750 0.84217 0.84177 1.90475 1.14154 1.55321 1.86207 1.41860 1.09422 1.63836 1.05090 1.19648 0.92828 1.46778 0.83535 0.88003 1.25248 0.95906 0.97423 0.99376 1.69609 1.08014 1.50260 1.26575 0.85925 0.79064 0.79027 0.80233 1.19920 1.21014 1.19964 0.88271 0.88866 0.86792 0.91910 0.90874 0.92647 0.92090 0.90911 0.92009 0.87796 0.96302 0.89077 0.93872 0.77531 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 14.06 29.02 0.41 -1.86 16 2 C -0.13 -1.76 7.25 -36.02 -0.26 -2.02 16 3 C 0.11 1.53 2.20 -68.87 -0.15 1.38 16 4 H 0.04 0.53 7.79 -51.93 -0.40 0.13 16 5 C -0.11 -1.29 5.36 -26.65 -0.14 -1.43 16 6 C -0.12 -1.41 6.00 -26.60 -0.16 -1.57 16 7 C -0.11 -1.60 6.09 -26.65 -0.16 -1.76 16 8 C 0.05 0.89 5.10 -3.83 -0.02 0.87 16 9 N -0.51 -8.88 4.23 -229.51 -0.97 -9.85 16 10 C 0.04 0.86 5.24 -4.97 -0.03 0.83 16 11 C 0.45 10.80 7.46 -10.98 -0.08 10.72 16 12 O -0.58 -15.76 13.90 5.55 0.08 -15.68 16 13 N -0.57 -14.65 5.29 -10.96 -0.06 -14.71 16 14 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 15 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 18 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H 0.10 1.02 8.06 -52.49 -0.42 0.59 16 23 H 0.09 1.03 7.84 -52.49 -0.41 0.62 16 24 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 2.15 5.78 -51.93 -0.30 1.85 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 1.63 6.37 -51.93 -0.33 1.30 16 34 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 293.66 15.07 4.43 4.43 Total: -1.00 -30.29 293.66 -7.17 -37.46 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.51 Total: 9.17 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.84 Total: -2.92 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.30 Total: -48.73 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.29 -7.17 -37.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331142263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.222 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds