Wall clock time and date at job start Sun Mar 29 2020 22:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 119.99928 * 2 1 4 4 H 1.08998 * 109.46310 * 5.02042 * 3 2 1 5 5 C 1.53036 * 109.45966 * 124.99843 * 3 2 1 6 6 C 1.53123 * 109.27788 * 179.18488 * 5 3 2 7 7 C 1.53124 * 109.15980 * 302.34618 * 6 5 3 8 8 C 1.53041 * 109.27510 * 57.65355 * 7 6 5 9 9 N 1.46842 * 109.52407 * 300.81747 * 8 7 6 10 10 C 1.46903 * 111.00077 * 185.84059 * 9 8 7 11 11 C 1.50708 * 109.46829 * 65.79231 * 10 9 8 12 12 O 1.21294 * 119.99938 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99709 * 180.02562 * 11 10 9 14 14 C 1.37098 * 120.00039 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99896 * 0.02562 * 14 13 11 16 16 C 1.38949 * 120.00481 * 179.97438 * 14 13 11 17 17 N 1.31412 * 119.99680 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48488 * 109.47117 * 59.99878 * 18 16 14 20 20 H 1.48499 * 109.47254 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46876 * 300.00218 * 18 16 14 22 22 H 1.08000 * 119.99928 * 179.97438 * 1 2 3 23 23 H 1.07996 * 120.00214 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00423 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.50632 * 299.12781 * 5 3 2 26 26 H 1.09006 * 109.50216 * 59.24575 * 5 3 2 27 27 H 1.09000 * 109.52181 * 62.25097 * 6 5 3 28 28 H 1.08997 * 109.52376 * 182.44203 * 6 5 3 29 29 H 1.08997 * 109.50272 * 297.71554 * 7 6 5 30 30 H 1.08997 * 109.53375 * 177.61494 * 7 6 5 31 31 H 1.09006 * 109.45562 * 180.80294 * 8 7 6 32 32 H 1.08991 * 109.45245 * 60.83364 * 8 7 6 33 33 H 1.08996 * 109.47208 * 185.79079 * 10 9 8 34 34 H 1.08994 * 109.47072 * 305.79600 * 10 9 8 35 35 H 0.97000 * 120.00337 * 359.97438 * 13 11 10 36 36 H 0.96997 * 119.99677 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3584 2.1315 0.0899 5 6 3.0351 1.3329 1.1820 6 6 3.8128 2.6518 1.1663 7 6 4.5465 2.7867 -0.1710 8 6 3.5309 2.7168 -1.3137 9 7 2.8139 1.4366 -1.2554 10 6 1.9291 1.2754 -2.4169 11 6 2.7595 1.1706 -3.6702 12 8 3.9693 1.2253 -3.6024 13 7 2.1578 1.0170 -4.8663 14 6 2.9132 0.9222 -6.0065 15 1 3.9905 0.9701 -5.9461 16 6 2.2929 0.7633 -7.2396 17 7 0.9822 0.7045 -7.3131 18 14 3.3222 0.6334 -8.7931 19 1 4.2251 -0.5410 -8.6918 20 1 2.4278 0.4710 -9.9674 21 1 4.1319 1.8678 -8.9551 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 2.4764 1.2509 2.1144 26 1 3.7318 0.4986 1.1000 27 1 3.1201 3.4846 1.2873 28 1 4.5367 2.6576 1.9811 29 1 5.2669 1.9753 -0.2742 30 1 5.0681 3.7431 -0.2056 31 1 4.0518 2.7982 -2.2678 32 1 2.8192 3.5365 -1.2174 33 1 1.3348 0.3694 -2.2980 34 1 1.2664 2.1375 -2.4913 35 1 1.1903 0.9736 -4.9205 36 1 0.5492 0.5940 -8.1740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331142263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:28 Heat of formation + Delta-G solvation = -39.744013 kcal Electronic energy + Delta-G solvation = -17270.459931 eV Core-core repulsion = 14560.826722 eV Total energy + Delta-G solvation = -2709.633209 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83603 -39.32379 -35.99207 -35.08104 -34.09154 -33.23491 -30.57856 -28.95369 -26.48593 -24.14346 -24.03130 -21.07740 -20.69368 -20.59361 -19.85812 -17.80685 -16.98570 -16.61715 -16.27101 -15.80469 -15.56001 -15.41562 -15.04401 -14.51808 -14.49932 -13.91388 -13.87196 -13.44526 -13.06992 -12.95955 -12.71790 -12.43362 -12.37582 -12.12471 -12.01350 -11.64968 -11.57016 -11.34139 -11.20652 -10.26999 -10.22574 -9.99325 -9.16370 -8.45894 -5.94820 1.34344 1.39967 1.41311 1.52571 2.05404 2.29082 2.82744 3.20496 3.39540 3.81787 3.97859 4.02869 4.16973 4.26581 4.35519 4.37637 4.46786 4.49487 4.59226 4.70592 4.88987 4.95944 5.01155 5.09029 5.11139 5.24756 5.33979 5.40784 5.51280 5.71338 5.75735 5.95641 6.14460 6.32539 6.61255 7.13166 7.56423 8.12560 8.71484 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035385 B = 0.005854 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.112640 B = 4781.971494 C = 5383.913093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.157 4.157 3 C 0.109 3.891 4 H 0.046 0.954 5 C -0.104 4.104 6 C -0.114 4.114 7 C -0.110 4.110 8 C 0.052 3.948 9 N -0.524 5.524 10 C 0.060 3.940 11 C 0.442 3.558 12 O -0.612 6.612 13 N -0.574 5.574 14 C -0.334 4.334 15 H 0.079 0.921 16 C -0.013 4.013 17 N -0.921 5.921 18 Si 0.994 3.006 19 H -0.272 1.272 20 H -0.270 1.270 21 H -0.272 1.272 22 H 0.113 0.887 23 H 0.102 0.898 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.029 0.971 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.395 0.605 36 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.069 2.174 15.408 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.176 4.176 3 C 0.002 3.998 4 H 0.064 0.936 5 C -0.141 4.141 6 C -0.152 4.152 7 C -0.148 4.148 8 C -0.075 4.075 9 N -0.250 5.250 10 C -0.072 4.072 11 C 0.229 3.771 12 O -0.498 6.498 13 N -0.212 5.212 14 C -0.463 4.463 15 H 0.097 0.903 16 C -0.212 4.212 17 N -0.562 5.562 18 Si 0.817 3.183 19 H -0.197 1.197 20 H -0.194 1.194 21 H -0.197 1.197 22 H 0.132 0.868 23 H 0.120 0.880 24 H 0.126 0.874 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.228 0.772 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.041 1.826 15.281 15.425 hybrid contribution -0.660 0.428 -1.193 1.429 sum -1.701 2.253 14.088 14.368 Atomic orbital electron populations 1.24056 0.95345 1.02917 0.99226 1.22871 0.96055 0.97877 1.00761 1.20937 0.94183 0.95107 0.89569 0.93606 1.21581 0.97712 0.98341 0.96496 1.21583 0.99443 0.97440 0.96721 1.21526 0.97356 1.01837 0.94046 1.22176 0.96482 0.88371 1.00510 1.61521 1.28053 1.34792 1.00589 1.21683 0.93857 1.02765 0.88854 1.20740 0.88853 0.82235 0.85263 1.90452 1.16096 1.56323 1.86966 1.41928 1.09410 1.64542 1.05305 1.19630 0.92239 1.49209 0.85236 0.90329 1.26044 0.97133 0.96284 1.01787 1.69673 1.09026 1.49882 1.27655 0.84980 0.77723 0.78907 0.76659 1.19743 1.19401 1.19701 0.86848 0.87978 0.87378 0.89370 0.91984 0.91476 0.89942 0.92755 0.90598 0.92191 0.95308 0.87707 0.92412 0.77157 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.63 14.06 67.79 0.95 -2.67 16 2 C -0.16 -3.81 7.25 25.65 0.19 -3.62 16 3 C 0.11 2.86 2.20 44.19 0.10 2.96 16 4 H 0.05 1.14 7.79 -2.39 -0.02 1.13 16 5 C -0.10 -2.27 5.36 30.65 0.16 -2.11 16 6 C -0.11 -2.38 6.00 30.68 0.18 -2.20 16 7 C -0.11 -3.00 6.09 30.65 0.19 -2.82 16 8 C 0.05 1.80 5.10 86.33 0.44 2.24 16 9 N -0.52 -18.19 4.23 -880.05 -3.72 -21.91 16 10 C 0.06 2.25 5.24 85.56 0.45 2.70 16 11 C 0.44 22.02 7.46 87.66 0.65 22.67 16 12 O -0.61 -34.86 13.90 -3.07 -0.04 -34.90 16 13 N -0.57 -30.55 5.29 -306.98 -1.62 -32.17 16 14 C -0.33 -19.38 9.68 84.04 0.81 -18.57 16 15 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 16 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 17 N -0.92 -50.57 13.05 21.66 0.28 -50.29 16 18 Si 0.99 43.59 29.55 68.60 2.03 45.61 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H 0.11 1.99 8.06 -2.91 -0.02 1.97 16 23 H 0.10 1.92 7.84 -2.91 -0.02 1.89 16 24 H 0.11 2.73 8.06 -2.91 -0.02 2.70 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 2.59 5.78 -2.38 -0.01 2.57 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 3.66 6.37 -2.39 -0.02 3.65 16 34 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 35 H 0.39 20.03 7.90 -92.71 -0.73 19.30 16 36 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -66.21 293.66 1.85 -64.37 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.32 Total: 30.93 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 4.59 Total: -1.65 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -5.06 Total: -104.37 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.04 Total: -34.90 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -66.21 1.85 -64.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331142263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.624 kcal (2) G-P(sol) polarization free energy of solvation -66.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds