Wall clock time and date at job start Sun Mar 29 2020 21:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48497 * 109.47303 * 274.90140 * 3 2 1 5 5 H 1.48496 * 109.47099 * 34.90431 * 3 2 1 6 6 H 1.48507 * 109.46933 * 154.90606 * 3 2 1 7 7 C 1.38811 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99848 * 339.74325 * 7 2 1 9 9 N 1.36937 * 120.00267 * 159.74944 * 7 2 1 10 10 C 1.46927 * 120.63166 * 152.80648 * 9 7 2 11 11 C 1.53189 * 108.77601 * 126.37160 * 10 9 7 12 12 C 1.53041 * 109.31233 * 54.63380 * 11 10 9 13 13 C 1.53039 * 109.53806 * 298.63503 * 12 11 10 14 14 H 1.09000 * 109.49907 * 301.41315 * 13 12 11 15 15 N 1.46507 * 109.49784 * 181.31764 * 13 12 11 16 16 C 1.46759 * 124.35175 * 119.88644 * 15 13 12 17 17 C 1.54661 * 105.38480 * 162.85291 * 16 15 13 18 18 C 1.54638 * 101.68064 * 25.76814 * 17 16 15 19 19 C 1.34423 * 124.34653 * 300.18644 * 15 13 12 20 20 O 1.21281 * 124.94587 * 0.38663 * 19 15 13 21 21 C 1.46925 * 120.62849 * 332.78748 * 9 7 2 22 22 H 0.96999 * 119.99674 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.58311 * 6.58146 * 10 9 7 24 24 H 1.09001 * 109.58335 * 246.16127 * 10 9 7 25 25 H 1.08997 * 109.49855 * 294.68308 * 11 10 9 26 26 H 1.09005 * 109.49976 * 174.58550 * 11 10 9 27 27 H 1.08996 * 109.45955 * 178.61327 * 12 11 10 28 28 H 1.09002 * 109.44853 * 58.65371 * 12 11 10 29 29 H 1.09000 * 110.24633 * 281.98860 * 16 15 13 30 30 H 1.08998 * 110.24304 * 43.98683 * 16 15 13 31 31 H 1.08997 * 111.19396 * 267.60164 * 17 16 15 32 32 H 1.08994 * 110.85386 * 143.79113 * 17 16 15 33 33 H 1.08998 * 110.48139 * 216.30639 * 18 17 16 34 34 H 1.09002 * 110.48243 * 93.66368 * 18 17 16 35 35 H 1.09004 * 109.58624 * 113.84143 * 21 9 7 36 36 H 1.08996 * 109.59208 * 353.41498 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3941 2.1063 -1.3949 5 1 1.5034 2.6205 0.8011 6 1 3.5958 1.4124 0.5938 7 6 2.0103 -1.2021 -0.0005 8 1 1.5203 -2.1087 0.3229 9 7 3.3162 -1.2387 -0.4110 10 6 4.2333 -2.2662 0.1008 11 6 4.8793 -2.9863 -1.0870 12 6 5.5396 -1.9556 -2.0055 13 6 4.4772 -0.9942 -2.5432 14 1 3.7169 -1.5577 -3.0840 15 7 5.1053 -0.0273 -3.4471 16 6 4.7506 0.1354 -4.8619 17 6 5.3243 1.5115 -5.2732 18 6 6.4870 1.6791 -4.2676 19 6 6.0845 0.8210 -3.0886 20 8 6.5738 0.8888 -1.9809 21 6 3.8267 -0.2514 -1.3720 22 1 -0.4849 0.8401 0.0004 23 1 3.6778 -2.9835 0.7049 24 1 5.0069 -1.7957 0.7077 25 1 4.1152 -3.5311 -1.6414 26 1 5.6328 -3.6848 -0.7229 27 1 6.0212 -2.4674 -2.8386 28 1 6.2863 -1.3944 -1.4437 29 1 5.2021 -0.6580 -5.4576 30 1 3.6673 0.1285 -4.9823 31 1 4.5832 2.3009 -5.1476 32 1 5.6952 1.4867 -6.2977 33 1 6.5826 2.7220 -3.9654 34 1 7.4205 1.3192 -4.7003 35 1 4.5672 0.3832 -0.8852 36 1 3.0030 0.3605 -1.7396 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334311087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:42 Heat of formation + Delta-G solvation = -9.654226 kcal Electronic energy + Delta-G solvation = -18127.277716 eV Core-core repulsion = 15418.949298 eV Total energy + Delta-G solvation = -2708.328418 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33507 -37.45519 -36.08186 -33.38903 -32.12272 -30.64705 -28.65532 -27.42946 -25.23758 -22.95669 -22.18181 -21.87203 -19.69003 -18.65440 -16.83760 -16.48077 -16.29786 -15.45914 -14.67025 -14.03619 -13.73262 -13.61975 -13.52960 -13.50901 -13.05805 -12.79884 -12.64891 -12.14779 -12.01032 -11.56840 -11.52497 -11.07311 -11.04122 -10.69168 -10.50755 -10.17492 -9.93379 -9.84591 -9.44948 -9.27272 -8.70130 -8.33241 -6.93152 -5.94589 -3.29993 2.84567 3.23664 3.35748 3.51575 3.61920 4.43071 4.47897 4.55851 4.78778 5.01077 5.12176 5.27532 5.33151 5.45907 5.50875 5.56799 5.62073 5.65948 5.71394 5.83849 5.94200 5.99141 6.17731 6.32460 6.38199 6.48693 6.62803 6.68206 6.70826 6.88714 7.08582 7.46799 7.96765 8.33650 8.46415 8.95303 9.73305 10.11924 11.21028 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.010554 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.490617 B = 2652.470602 C = 3239.207183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.879 3.121 4 H -0.292 1.292 5 H -0.303 1.303 6 H -0.267 1.267 7 C -0.259 4.259 8 H 0.088 0.912 9 N -0.603 5.603 10 C 0.146 3.854 11 C -0.131 4.131 12 C -0.122 4.122 13 C 0.140 3.860 14 H 0.088 0.912 15 N -0.613 5.613 16 C 0.100 3.900 17 C -0.132 4.132 18 C -0.157 4.157 19 C 0.511 3.489 20 O -0.529 6.529 21 C 0.120 3.880 22 H 0.262 0.738 23 H 0.064 0.936 24 H 0.025 0.975 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.400 -0.242 -11.937 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.710 3.290 4 H -0.220 1.220 5 H -0.231 1.231 6 H -0.192 1.192 7 C -0.387 4.387 8 H 0.106 0.894 9 N -0.327 5.327 10 C 0.020 3.980 11 C -0.170 4.170 12 C -0.161 4.161 13 C 0.036 3.964 14 H 0.106 0.894 15 N -0.348 5.348 16 C -0.023 4.023 17 C -0.170 4.170 18 C -0.197 4.197 19 C 0.298 3.702 20 O -0.405 6.405 21 C -0.007 4.007 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.436 -0.186 -11.259 16.049 hybrid contribution 0.322 1.006 -0.195 1.074 sum 11.758 0.819 -11.454 16.435 Atomic orbital electron populations 1.69834 1.05649 1.26510 1.53111 1.25261 0.95218 0.97504 0.99442 0.87002 0.80408 0.84686 0.76908 1.22002 1.23097 1.19154 1.18945 0.84685 0.94779 1.40297 0.89435 1.44306 1.08622 1.33170 1.46620 1.20983 0.92501 0.91171 0.93359 1.21999 0.99380 0.97365 0.98304 1.21781 0.98243 0.97021 0.99020 1.21809 0.94252 0.89300 0.91033 0.89383 1.48561 1.37728 1.37646 1.10825 1.22121 1.01266 0.97128 0.81823 1.22629 0.97742 0.97233 0.99408 1.22347 0.99945 1.01733 0.95659 1.20850 0.79348 0.80874 0.89144 1.90710 1.57021 1.69465 1.23338 1.21683 0.97336 0.92348 0.89312 0.92798 0.91724 0.95729 0.91960 0.92304 0.93181 0.90938 0.91266 0.90233 0.89990 0.89418 0.88414 0.88203 0.93794 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.25 13.97 55.49 0.78 -27.47 16 2 C 0.02 0.73 5.24 -17.43 -0.09 0.64 16 3 Si 0.88 23.79 24.35 -169.99 -4.14 19.65 16 4 H -0.29 -7.68 6.70 56.52 0.38 -7.31 16 5 H -0.30 -8.21 7.11 56.52 0.40 -7.81 16 6 H -0.27 -7.39 6.45 56.52 0.36 -7.02 16 7 C -0.26 -7.42 10.04 -15.06 -0.15 -7.57 16 8 H 0.09 2.63 8.05 -52.49 -0.42 2.21 16 9 N -0.60 -15.09 2.77 -172.32 -0.48 -15.57 16 10 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 11 C -0.13 -2.25 6.08 -26.61 -0.16 -2.42 16 12 C -0.12 -2.14 5.15 -26.69 -0.14 -2.28 16 13 C 0.14 2.65 2.90 -67.81 -0.20 2.46 16 14 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 15 N -0.61 -10.06 2.83 -164.59 -0.47 -10.53 16 16 C 0.10 1.16 7.31 -3.03 -0.02 1.14 16 17 C -0.13 -1.24 7.19 -25.00 -0.18 -1.42 16 18 C -0.16 -1.79 6.86 -26.74 -0.18 -1.98 16 19 C 0.51 8.76 7.39 -10.86 -0.08 8.68 16 20 O -0.53 -11.30 15.09 5.56 0.08 -11.22 16 21 C 0.12 2.84 3.54 -3.71 -0.01 2.83 16 22 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 23 H 0.06 1.31 7.93 -51.93 -0.41 0.89 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.42 6.81 -51.93 -0.35 1.07 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.04 1.14 5.50 -51.93 -0.29 0.86 16 36 H 0.07 1.78 4.49 -51.93 -0.23 1.55 16 LS Contribution 278.07 15.07 4.19 4.19 Total: -1.00 -34.07 278.07 -6.82 -40.90 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -5.55 Total: -3.04 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.24 Total: 3.09 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.17 Total: -53.57 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.14 Total: 19.65 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -34.07 -6.82 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334311087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.241 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds