Wall clock time and date at job start Sun Mar 29 2020 21:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48497 * 109.47303 * 274.90140 * 3 2 1 5 5 H 1.48496 * 109.47099 * 34.90431 * 3 2 1 6 6 H 1.48507 * 109.46933 * 154.90606 * 3 2 1 7 7 C 1.38811 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99848 * 339.74325 * 7 2 1 9 9 N 1.36937 * 120.00267 * 159.74944 * 7 2 1 10 10 C 1.46927 * 120.63166 * 152.80648 * 9 7 2 11 11 C 1.53189 * 108.77601 * 126.37160 * 10 9 7 12 12 C 1.53041 * 109.31233 * 54.63380 * 11 10 9 13 13 C 1.53039 * 109.53806 * 298.63503 * 12 11 10 14 14 H 1.09000 * 109.49907 * 301.41315 * 13 12 11 15 15 N 1.46507 * 109.49784 * 181.31764 * 13 12 11 16 16 C 1.46759 * 124.35175 * 119.88644 * 15 13 12 17 17 C 1.54661 * 105.38480 * 162.85291 * 16 15 13 18 18 C 1.54638 * 101.68064 * 25.76814 * 17 16 15 19 19 C 1.34423 * 124.34653 * 300.18644 * 15 13 12 20 20 O 1.21281 * 124.94587 * 0.38663 * 19 15 13 21 21 C 1.46925 * 120.62849 * 332.78748 * 9 7 2 22 22 H 0.96999 * 119.99674 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.58311 * 6.58146 * 10 9 7 24 24 H 1.09001 * 109.58335 * 246.16127 * 10 9 7 25 25 H 1.08997 * 109.49855 * 294.68308 * 11 10 9 26 26 H 1.09005 * 109.49976 * 174.58550 * 11 10 9 27 27 H 1.08996 * 109.45955 * 178.61327 * 12 11 10 28 28 H 1.09002 * 109.44853 * 58.65371 * 12 11 10 29 29 H 1.09000 * 110.24633 * 281.98860 * 16 15 13 30 30 H 1.08998 * 110.24304 * 43.98683 * 16 15 13 31 31 H 1.08997 * 111.19396 * 267.60164 * 17 16 15 32 32 H 1.08994 * 110.85386 * 143.79113 * 17 16 15 33 33 H 1.08998 * 110.48139 * 216.30639 * 18 17 16 34 34 H 1.09002 * 110.48243 * 93.66368 * 18 17 16 35 35 H 1.09004 * 109.58624 * 113.84143 * 21 9 7 36 36 H 1.08996 * 109.59208 * 353.41498 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3941 2.1063 -1.3949 5 1 1.5034 2.6205 0.8011 6 1 3.5958 1.4124 0.5938 7 6 2.0103 -1.2021 -0.0005 8 1 1.5203 -2.1087 0.3229 9 7 3.3162 -1.2387 -0.4110 10 6 4.2333 -2.2662 0.1008 11 6 4.8793 -2.9863 -1.0870 12 6 5.5396 -1.9556 -2.0055 13 6 4.4772 -0.9942 -2.5432 14 1 3.7169 -1.5577 -3.0840 15 7 5.1053 -0.0273 -3.4471 16 6 4.7506 0.1354 -4.8619 17 6 5.3243 1.5115 -5.2732 18 6 6.4870 1.6791 -4.2676 19 6 6.0845 0.8210 -3.0886 20 8 6.5738 0.8888 -1.9809 21 6 3.8267 -0.2514 -1.3720 22 1 -0.4849 0.8401 0.0004 23 1 3.6778 -2.9835 0.7049 24 1 5.0069 -1.7957 0.7077 25 1 4.1152 -3.5311 -1.6414 26 1 5.6328 -3.6848 -0.7229 27 1 6.0212 -2.4674 -2.8386 28 1 6.2863 -1.3944 -1.4437 29 1 5.2021 -0.6580 -5.4576 30 1 3.6673 0.1285 -4.9823 31 1 4.5832 2.3009 -5.1476 32 1 5.6952 1.4867 -6.2977 33 1 6.5826 2.7220 -3.9654 34 1 7.4205 1.3192 -4.7003 35 1 4.5672 0.3832 -0.8852 36 1 3.0030 0.3605 -1.7396 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334311087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:41 Heat of formation + Delta-G solvation = -33.616936 kcal Electronic energy + Delta-G solvation = -18128.316817 eV Core-core repulsion = 15418.949298 eV Total energy + Delta-G solvation = -2709.367519 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59709 -39.11786 -37.35296 -35.21149 -33.66495 -32.56891 -30.06339 -28.42935 -27.24522 -24.56946 -23.92345 -22.80568 -21.29070 -20.05032 -18.86731 -17.88670 -17.44468 -17.09804 -16.33608 -15.78186 -15.43547 -15.17247 -14.94654 -14.78355 -14.47861 -14.29855 -13.96186 -13.77596 -13.55400 -13.31001 -12.83568 -12.57047 -12.44564 -12.29522 -11.87018 -11.84343 -11.77939 -11.57989 -11.46824 -10.84056 -10.62480 -9.73716 -8.98229 -8.26417 -5.56714 1.14546 1.27612 1.39747 1.57848 2.01709 2.29769 3.00084 3.28848 3.42619 3.62849 3.83875 3.94492 4.06428 4.10350 4.21429 4.28152 4.38969 4.51970 4.64405 4.68237 4.76306 4.83390 4.87043 4.95718 5.01213 5.06370 5.09525 5.10564 5.21927 5.41509 5.63421 5.80800 6.04999 6.25338 6.81036 7.18893 7.52518 7.95369 8.93215 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.010554 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.490617 B = 2652.470602 C = 3239.207183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.022 4.022 3 Si 0.934 3.066 4 H -0.284 1.284 5 H -0.303 1.303 6 H -0.283 1.283 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.618 5.618 10 C 0.137 3.863 11 C -0.119 4.119 12 C -0.113 4.113 13 C 0.145 3.855 14 H 0.095 0.905 15 N -0.620 5.620 16 C 0.091 3.909 17 C -0.119 4.119 18 C -0.146 4.146 19 C 0.491 3.509 20 O -0.584 6.584 21 C 0.124 3.876 22 H 0.263 0.737 23 H 0.067 0.933 24 H 0.019 0.981 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.017 0.983 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.134 -0.641 -14.622 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.217 4.217 3 Si 0.765 3.235 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.209 1.209 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.343 5.343 10 C 0.012 3.988 11 C -0.158 4.158 12 C -0.152 4.152 13 C 0.041 3.959 14 H 0.113 0.887 15 N -0.353 5.353 16 C -0.031 4.031 17 C -0.157 4.157 18 C -0.186 4.186 19 C 0.281 3.719 20 O -0.465 6.465 21 C -0.002 4.002 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.037 0.963 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.120 0.880 34 H 0.147 0.853 35 H 0.035 0.965 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.193 -0.589 -13.999 19.245 hybrid contribution -0.187 1.066 0.668 1.271 sum 13.007 0.476 -13.332 18.631 Atomic orbital electron populations 1.69907 1.06665 1.27066 1.55601 1.25698 0.95697 0.99749 1.00596 0.86122 0.78239 0.82131 0.76993 1.21152 1.23101 1.20913 1.18970 0.86121 0.93864 1.38471 0.91425 1.44485 1.08027 1.34125 1.47619 1.21212 0.91841 0.90450 0.95252 1.21889 1.00100 0.97316 0.96538 1.21706 0.97169 0.96552 0.99756 1.21463 0.95026 0.89506 0.89949 0.88653 1.48721 1.37201 1.36900 1.12505 1.22499 1.01731 0.99654 0.79194 1.22693 0.96547 0.95524 1.00926 1.22389 1.01939 1.00692 0.93593 1.21951 0.78883 0.81178 0.89886 1.90674 1.58845 1.70980 1.25967 1.21495 0.95829 0.92146 0.90698 0.92734 0.91466 0.96287 0.91332 0.88905 0.89942 0.93210 0.88191 0.90436 0.90400 0.85180 0.87954 0.85337 0.96496 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.14 13.97 21.65 0.30 -59.83 16 2 C -0.02 -1.32 5.24 84.86 0.44 -0.88 16 3 Si 0.93 50.93 24.35 68.60 1.67 52.60 16 4 H -0.28 -14.88 6.70 99.48 0.67 -14.21 16 5 H -0.30 -16.30 7.11 99.48 0.71 -15.59 16 6 H -0.28 -16.02 6.45 99.48 0.64 -15.38 16 7 C -0.24 -14.32 10.04 84.03 0.84 -13.48 16 8 H 0.07 4.18 8.05 -2.91 -0.02 4.15 16 9 N -0.62 -31.22 2.77 -699.10 -1.94 -33.16 16 10 C 0.14 5.67 6.52 86.36 0.56 6.23 16 11 C -0.12 -3.82 6.08 30.67 0.19 -3.63 16 12 C -0.11 -3.74 5.15 30.62 0.16 -3.58 16 13 C 0.15 5.32 2.90 45.07 0.13 5.46 16 14 H 0.10 3.36 8.07 -2.39 -0.02 3.34 16 15 N -0.62 -19.12 2.83 -793.24 -2.25 -21.37 16 16 C 0.09 1.77 7.31 86.90 0.64 2.40 16 17 C -0.12 -1.71 7.19 31.72 0.23 -1.49 16 18 C -0.15 -2.87 6.86 30.59 0.21 -2.66 16 19 C 0.49 16.18 7.39 87.90 0.65 16.83 16 20 O -0.58 -25.19 15.09 -3.03 -0.05 -25.24 16 21 C 0.12 5.97 3.54 86.36 0.31 6.27 16 22 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 23 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 24 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 27 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.05 1.90 6.81 -2.39 -0.02 1.88 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.02 0.91 5.50 -2.39 -0.01 0.90 16 36 H 0.04 2.31 4.49 -2.39 -0.01 2.30 16 Total: -1.00 -77.23 278.07 3.04 -74.19 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: 0.95 Total: 1.33 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 4.35 Total: 11.48 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -3.89 Total: -114.36 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.05 Total: -25.24 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 1.67 Total: 52.60 kcal Total: -77.23 3.04 -74.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334311087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.574 kcal (2) G-P(sol) polarization free energy of solvation -77.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds